Wall clock time and date at job start Sun Mar 29 2020 21:56:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86800 * 119.99598 * 2 1 4 4 H 1.48504 * 109.47130 * 274.99144 * 3 2 1 5 5 H 1.48494 * 109.47434 * 34.99208 * 3 2 1 6 6 H 1.48504 * 109.46951 * 154.99463 * 3 2 1 7 7 C 1.38979 * 120.00156 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99814 * 212.46986 * 7 2 1 9 9 N 1.36979 * 119.99581 * 32.47746 * 7 2 1 10 10 C 1.46494 * 120.00286 * 8.62330 * 9 7 2 11 11 C 1.50701 * 109.47368 * 267.86959 * 10 9 7 12 12 O 1.20822 * 119.99513 * 0.02562 * 11 10 9 13 13 O 1.34227 * 120.00055 * 180.02562 * 11 10 9 14 14 C 1.34782 * 119.99570 * 188.62447 * 9 7 2 15 15 O 1.21631 * 120.00234 * 4.26863 * 14 9 7 16 16 C 1.47350 * 119.99853 * 184.26928 * 14 9 7 17 17 C 1.41321 * 126.42074 * 341.74289 * 16 14 9 18 18 N 1.30450 * 108.02665 * 179.70334 * 17 16 14 19 19 N 1.39927 * 108.91353 * 0.43780 * 18 17 16 20 20 H 0.96996 * 125.75546 * 179.80764 * 19 18 17 21 21 C 1.34292 * 108.49786 * 359.55380 * 19 18 17 22 22 H 0.96998 * 120.00659 * 0.02562 * 1 2 3 23 23 H 1.08999 * 109.47263 * 27.87671 * 10 9 7 24 24 H 1.09004 * 109.47196 * 147.86906 * 10 9 7 25 25 H 0.96699 * 117.00094 * 179.97438 * 13 11 10 26 26 H 1.08001 * 125.99302 * 0.02562 * 17 16 14 27 27 H 1.07998 * 126.29726 * 180.24045 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.3899 2.1074 -1.3948 5 1 1.5022 2.6199 0.8028 6 1 3.5943 1.4121 0.5918 7 6 2.0090 -1.2036 0.0005 8 1 2.9624 -1.2764 0.5027 9 7 1.4847 -2.2973 -0.6360 10 6 0.2915 -2.1552 -1.4739 11 6 -0.9389 -2.4197 -0.6450 12 8 -0.8302 -2.6979 0.5257 13 8 -2.1555 -2.3462 -1.2072 14 6 2.0667 -3.5044 -0.4913 15 8 3.0100 -3.6381 0.2649 16 6 1.5603 -4.6620 -1.2493 17 6 0.2950 -4.7705 -1.8693 18 7 0.2256 -5.9399 -2.4433 19 7 1.4211 -6.6297 -2.2132 20 1 1.6297 -7.5231 -2.5282 21 6 2.2333 -5.8443 -1.4874 22 1 -0.4851 0.8400 -0.0004 23 1 0.2482 -1.1429 -1.8758 24 1 0.3369 -2.8704 -2.2952 25 1 -2.9148 -2.5244 -0.6356 26 1 -0.4772 -4.0154 -1.8723 27 1 3.2294 -6.0918 -1.1514 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000739087251.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:28 Heat of formation + Delta-G solvation = -41.303658 kcal Electronic energy + Delta-G solvation = -17481.978940 eV Core-core repulsion = 14435.186000 eV Total energy + Delta-G solvation = -3046.792941 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.074 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.46212 -41.02251 -39.65017 -37.01208 -36.37649 -34.07147 -32.64170 -31.19018 -29.64956 -27.05014 -23.82295 -23.02113 -22.68571 -20.61905 -19.33661 -18.96914 -18.66162 -17.52643 -17.29653 -16.61577 -16.30525 -15.98824 -15.77404 -15.20641 -14.81368 -14.50373 -13.95324 -13.69494 -13.60076 -13.11137 -12.55411 -12.29331 -12.18819 -12.15555 -12.07773 -11.53320 -10.91945 -10.76852 -10.51246 -9.94354 -9.75375 -8.49332 -5.84475 0.63733 1.07139 1.45818 1.47448 1.59852 1.61534 1.89105 2.18722 2.35286 2.55970 2.92186 3.23765 3.64350 3.94183 4.14516 4.22040 4.41729 4.63536 4.68519 4.89888 5.24015 5.49729 5.92097 6.02320 6.26251 6.39337 6.53770 7.11375 7.29472 7.43440 7.97315 8.59247 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.028908 B = 0.010119 C = 0.008132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.355817 B = 2766.319520 C = 3442.542156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.006 3.994 3 Si 0.988 3.012 4 H -0.258 1.258 5 H -0.281 1.281 6 H -0.275 1.275 7 C -0.352 4.352 8 H 0.083 0.917 9 N -0.433 5.433 10 C 0.124 3.876 11 C 0.491 3.509 12 O -0.540 6.540 13 O -0.517 6.517 14 C 0.516 3.484 15 O -0.628 6.628 16 C -0.300 4.300 17 C 0.050 3.950 18 N -0.303 5.303 19 N -0.441 5.441 20 H 0.462 0.538 21 C 0.138 3.862 22 H 0.277 0.723 23 H 0.117 0.883 24 H 0.129 0.871 25 H 0.416 0.584 26 H 0.191 0.809 27 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.927 -6.975 -8.631 11.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.198 4.198 3 Si 0.811 3.189 4 H -0.183 1.183 5 H -0.207 1.207 6 H -0.200 1.200 7 C -0.479 4.479 8 H 0.101 0.899 9 N -0.150 5.150 10 C -0.002 4.002 11 C 0.333 3.667 12 O -0.428 6.428 13 O -0.330 6.330 14 C 0.307 3.693 15 O -0.517 6.517 16 C -0.315 4.315 17 C -0.136 4.136 18 N -0.126 5.126 19 N -0.150 5.150 20 H 0.312 0.688 21 C -0.016 4.016 22 H 0.087 0.913 23 H 0.135 0.865 24 H 0.146 0.854 25 H 0.276 0.724 26 H 0.207 0.793 27 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -2.023 -7.664 -8.888 11.909 hybrid contribution 0.213 1.027 1.319 1.685 sum -1.810 -6.637 -7.569 10.228 Atomic orbital electron populations 1.70056 1.07190 1.29142 1.45102 1.25951 0.95772 1.02394 0.95658 0.85021 0.78213 0.76617 0.79031 1.18283 1.20693 1.19985 1.19625 1.04406 0.87468 1.36399 0.89884 1.43429 1.22887 1.07014 1.41620 1.21427 0.80852 1.06027 0.91909 1.23718 0.85021 0.70816 0.87140 1.90624 1.87221 1.45674 1.19316 1.84455 1.16788 1.83939 1.47779 1.17605 0.85430 0.82130 0.84094 1.90542 1.33573 1.84681 1.42863 1.20478 0.98191 0.98677 1.14117 1.24674 0.97160 0.95709 0.96043 1.77014 1.04115 1.06789 1.24678 1.46097 1.10823 1.16901 1.41187 0.68848 1.23246 0.97709 0.88913 0.91739 0.91257 0.86529 0.85370 0.72392 0.79255 0.76625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -45.76 9.60 21.67 0.21 -45.56 15 2 C 0.01 0.30 4.66 84.93 0.40 0.70 15 3 Si 0.99 41.41 29.66 68.60 2.03 43.44 15 4 H -0.26 -10.04 7.11 99.48 0.71 -9.33 15 5 H -0.28 -11.51 7.11 99.48 0.71 -10.81 15 6 H -0.28 -11.81 7.11 99.48 0.71 -11.10 15 7 C -0.35 -20.13 9.34 84.07 0.79 -19.34 15 8 H 0.08 5.12 7.39 -2.91 -0.02 5.10 15 9 N -0.43 -22.73 2.12 -643.38 -1.37 -24.10 15 10 C 0.12 5.44 4.75 85.63 0.41 5.85 15 11 C 0.49 21.71 4.36 71.24 0.31 22.02 15 12 O -0.54 -28.96 16.89 21.97 0.37 -28.59 15 13 O -0.52 -17.47 13.31 -51.39 -0.68 -18.15 15 14 C 0.52 26.62 7.56 86.64 0.65 27.28 15 15 O -0.63 -36.62 16.56 -4.13 -0.07 -36.69 15 16 C -0.30 -11.95 5.86 -20.15 -0.12 -12.06 15 17 C 0.05 1.80 9.48 85.66 0.81 2.61 15 18 N -0.30 -9.32 12.63 -56.25 -0.71 -10.03 15 19 N -0.44 -10.37 7.29 -56.26 -0.41 -10.78 15 20 H 0.46 6.20 8.96 -213.44 -1.91 4.29 15 21 C 0.14 4.00 11.88 84.29 1.00 5.00 15 22 H 0.28 13.49 8.31 -92.71 -0.77 12.72 15 23 H 0.12 5.22 6.40 -2.39 -0.02 5.20 15 24 H 0.13 4.73 4.52 -2.39 -0.01 4.72 15 25 H 0.42 10.51 9.10 -74.06 -0.67 9.83 15 26 H 0.19 6.72 3.55 -2.91 -0.01 6.70 15 27 H 0.22 4.93 8.06 -2.91 -0.02 4.91 15 Total: -1.00 -78.47 243.56 2.31 -76.16 By element: Atomic # 1 Polarization: 23.55 SS G_CDS: -1.32 Total: 22.23 kcal Atomic # 6 Polarization: 27.79 SS G_CDS: 4.25 Total: 32.04 kcal Atomic # 7 Polarization: -88.17 SS G_CDS: -2.28 Total: -90.45 kcal Atomic # 8 Polarization: -83.05 SS G_CDS: -0.38 Total: -83.43 kcal Atomic # 14 Polarization: 41.41 SS G_CDS: 2.03 Total: 43.44 kcal Total: -78.47 2.31 -76.16 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739087251.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.857 kcal (2) G-P(sol) polarization free energy of solvation -78.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds