Wall clock time and date at job start Sun Mar 29 2020 21:54:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31376 * 1 3 3 Si 1.86809 * 119.99905 * 2 1 4 4 H 1.48501 * 109.47075 * 240.00065 * 3 2 1 5 5 H 1.48499 * 109.47008 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47078 * 120.00240 * 3 2 1 7 7 C 1.39029 * 120.00215 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99771 * 185.27407 * 7 2 1 9 9 N 1.36844 * 119.99677 * 5.27534 * 7 2 1 10 10 C 1.46495 * 120.00383 * 34.02771 * 9 7 2 11 11 C 1.50705 * 109.46935 * 262.80182 * 10 9 7 12 12 O 1.20833 * 119.99798 * 359.97438 * 11 10 9 13 13 O 1.34223 * 120.00253 * 179.97438 * 11 10 9 14 14 C 1.34786 * 119.99777 * 213.74864 * 9 7 2 15 15 O 1.21742 * 119.99669 * 185.52535 * 14 9 7 16 16 C 1.46515 * 119.99677 * 5.51919 * 14 9 7 17 17 C 1.36668 * 125.99106 * 175.11517 * 16 14 9 18 18 C 1.40327 * 106.70135 * 179.90843 * 17 16 14 19 19 C 1.35163 * 107.12922 * 0.35436 * 18 17 16 20 20 O 1.33961 * 108.77721 * 359.77905 * 19 18 17 21 21 H 0.97003 * 120.00727 * 359.97438 * 1 2 3 22 22 H 1.09002 * 109.47249 * 22.79822 * 10 9 7 23 23 H 1.09005 * 109.47704 * 142.80471 * 10 9 7 24 24 H 0.96703 * 117.00078 * 180.02562 * 13 11 10 25 25 H 1.08000 * 126.64803 * 0.03775 * 17 16 14 26 26 H 1.08005 * 126.43799 * 180.13126 * 18 17 16 27 27 H 1.07998 * 125.61300 * 179.73940 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3138 0.0000 0.0000 3 14 2.2478 1.6178 0.0000 4 1 3.1015 1.6965 -1.2125 5 1 1.2827 2.7465 -0.0006 6 1 3.1015 1.6965 1.2125 7 6 2.0089 -1.2040 -0.0005 8 1 3.0855 -1.2059 0.0854 9 7 1.3291 -2.3865 -0.1100 10 6 0.1130 -2.4598 -0.9236 11 6 -1.0955 -2.3163 -0.0347 12 8 -0.9553 -2.1686 1.1563 13 8 -2.3276 -2.3527 -0.5660 14 6 1.7814 -3.4853 0.5262 15 8 1.2357 -4.5591 0.3491 16 6 2.9298 -3.3874 1.4307 17 6 3.4295 -4.3956 2.2063 18 6 4.5234 -3.8625 2.9052 19 6 4.6378 -2.5669 2.5371 20 8 3.6759 -2.2845 1.6486 21 1 -0.4851 0.8400 0.0004 22 1 0.1197 -1.6562 -1.6602 23 1 0.0755 -3.4215 -1.4354 24 1 -3.0717 -2.2560 0.0440 25 1 3.0563 -5.4072 2.2677 26 1 5.1532 -4.3876 3.6081 27 1 5.3819 -1.8734 2.9000 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000739088531.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:03 Heat of formation + Delta-G solvation = -116.634453 kcal Electronic energy + Delta-G solvation = -17451.137999 eV Core-core repulsion = 14368.785719 eV Total energy + Delta-G solvation = -3082.352280 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.067 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -43.36680 -41.13083 -39.79156 -37.11585 -36.42549 -33.87153 -33.52547 -31.21219 -29.30490 -26.87090 -24.12934 -22.56517 -22.16741 -21.14470 -19.94908 -18.82380 -17.88714 -17.56368 -17.36686 -16.84630 -16.34552 -16.20617 -16.14761 -15.06550 -14.87053 -13.95300 -13.82236 -13.71706 -13.44313 -13.42148 -13.14218 -12.78643 -12.47939 -12.18118 -12.08667 -11.45754 -11.07344 -10.93449 -10.82192 -9.90084 -9.41121 -8.45060 -6.14130 0.30889 1.44969 1.46931 1.56263 1.61563 1.79954 1.98454 2.22471 2.33077 2.63439 2.88265 3.12935 4.06233 4.16905 4.26682 4.41678 4.60522 4.84802 4.85518 5.04760 5.08911 5.45310 5.62110 5.64809 5.94774 6.19859 6.30902 6.97290 7.26981 7.43162 7.69283 8.61977 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.019603 B = 0.013204 C = 0.008577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.039121 B = 2120.016544 C = 3263.577275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.002 3.998 3 Si 1.000 3.000 4 H -0.257 1.257 5 H -0.283 1.283 6 H -0.267 1.267 7 C -0.350 4.350 8 H 0.115 0.885 9 N -0.423 5.423 10 C 0.152 3.848 11 C 0.503 3.497 12 O -0.544 6.544 13 O -0.522 6.522 14 C 0.526 3.474 15 O -0.616 6.616 16 C -0.066 4.066 17 C -0.162 4.162 18 C -0.223 4.223 19 C -0.033 4.033 20 O -0.155 6.155 21 H 0.274 0.726 22 H 0.121 0.879 23 H 0.098 0.902 24 H 0.413 0.587 25 H 0.152 0.848 26 H 0.187 0.813 27 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.521 0.150 1.021 5.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.201 4.201 3 Si 0.823 3.177 4 H -0.181 1.181 5 H -0.208 1.208 6 H -0.192 1.192 7 C -0.476 4.476 8 H 0.132 0.868 9 N -0.139 5.139 10 C 0.027 3.973 11 C 0.345 3.655 12 O -0.432 6.432 13 O -0.334 6.334 14 C 0.317 3.683 15 O -0.506 6.506 16 C -0.119 4.119 17 C -0.183 4.183 18 C -0.241 4.241 19 C -0.102 4.102 20 O -0.049 6.049 21 H 0.084 0.916 22 H 0.139 0.861 23 H 0.115 0.885 24 H 0.272 0.728 25 H 0.170 0.830 26 H 0.204 0.796 27 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges 5.359 0.089 0.788 5.417 hybrid contribution -0.577 0.702 0.639 1.111 sum 4.782 0.791 1.427 5.053 Atomic orbital electron populations 1.69704 1.07561 1.28916 1.46443 1.26393 0.96193 1.03324 0.94186 0.84879 0.77719 0.75489 0.79645 1.18084 1.20824 1.19217 1.20090 0.92852 0.82251 1.52446 0.86818 1.43365 1.21467 1.09274 1.39803 1.20486 0.81086 1.03555 0.92133 1.23472 0.84320 0.69839 0.87902 1.90544 1.86726 1.46578 1.19392 1.84428 1.16733 1.85794 1.46446 1.17321 0.84499 0.84811 0.81624 1.90649 1.62419 1.29386 1.68160 1.21947 0.97866 0.86634 1.05434 1.22073 0.98182 0.99744 0.98323 1.22054 1.00831 0.95401 1.05843 1.25407 0.93289 0.98586 0.92943 1.84508 1.35371 1.35327 1.49671 0.91552 0.86139 0.88455 0.72792 0.83038 0.79600 0.73739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -46.44 8.73 21.68 0.19 -46.25 15 2 C 0.00 0.12 5.16 84.95 0.44 0.56 15 3 Si 1.00 39.24 29.56 68.60 2.03 41.27 15 4 H -0.26 -9.42 7.11 99.48 0.71 -8.72 15 5 H -0.28 -11.00 7.11 99.48 0.71 -10.29 15 6 H -0.27 -10.30 7.11 99.48 0.71 -9.60 15 7 C -0.35 -18.06 8.18 84.10 0.69 -17.37 15 8 H 0.11 5.67 5.69 -2.91 -0.02 5.65 15 9 N -0.42 -22.37 2.15 -644.28 -1.38 -23.76 15 10 C 0.15 7.39 5.17 85.64 0.44 7.84 15 11 C 0.50 24.83 6.37 71.24 0.45 25.29 15 12 O -0.54 -31.18 16.06 21.94 0.35 -30.83 15 13 O -0.52 -20.46 13.42 -51.35 -0.69 -21.15 15 14 C 0.53 28.18 7.33 86.40 0.63 28.81 15 15 O -0.62 -34.70 16.53 -4.48 -0.07 -34.77 15 16 C -0.07 -3.13 6.82 24.06 0.16 -2.96 15 17 C -0.16 -6.35 10.63 22.41 0.24 -6.11 15 18 C -0.22 -6.62 10.87 22.07 0.24 -6.38 15 19 C -0.03 -0.98 12.08 67.11 0.81 -0.17 15 20 O -0.15 -6.55 7.46 -5.39 -0.04 -6.59 15 21 H 0.27 13.71 8.31 -92.71 -0.77 12.94 15 22 H 0.12 5.66 7.09 -2.39 -0.02 5.64 15 23 H 0.10 4.39 7.57 -2.38 -0.02 4.37 15 24 H 0.41 12.39 9.10 -74.05 -0.67 11.72 15 25 H 0.15 5.68 8.06 -2.91 -0.02 5.66 15 26 H 0.19 3.83 8.06 -2.91 -0.02 3.81 15 27 H 0.25 4.56 8.06 -2.91 -0.02 4.53 15 Total: -1.00 -71.89 249.78 5.04 -66.84 By element: Atomic # 1 Polarization: 25.17 SS G_CDS: 0.55 Total: 25.72 kcal Atomic # 6 Polarization: 25.40 SS G_CDS: 4.11 Total: 29.51 kcal Atomic # 7 Polarization: -68.81 SS G_CDS: -1.19 Total: -70.01 kcal Atomic # 8 Polarization: -92.88 SS G_CDS: -0.45 Total: -93.34 kcal Atomic # 14 Polarization: 39.24 SS G_CDS: 2.03 Total: 41.27 kcal Total: -71.89 5.04 -66.84 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739088531.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.790 kcal (2) G-P(sol) polarization free energy of solvation -71.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds