Wall clock time and date at job start Sun Mar 29 2020 22:01:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86807 * 119.99582 * 2 1 4 4 H 1.48493 * 109.47224 * 270.00420 * 3 2 1 5 5 H 1.48505 * 109.46950 * 29.99971 * 3 2 1 6 6 H 1.48500 * 109.46963 * 149.99890 * 3 2 1 7 7 C 1.37875 * 120.00345 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99848 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00007 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47330 * 180.02562 * 9 7 2 11 11 O 1.45200 * 109.47592 * 180.02562 * 10 9 7 12 12 C 1.34689 * 117.00429 * 180.02562 * 11 10 9 13 13 O 1.21451 * 119.99731 * 359.97438 * 12 11 10 14 14 C 1.47886 * 120.00149 * 179.97438 * 12 11 10 15 15 C 1.39955 * 120.94592 * 0.24637 * 14 12 11 16 16 C 1.38035 * 119.02339 * 180.29775 * 15 14 12 17 17 N 1.31858 * 120.98904 * 359.72355 * 16 15 14 18 18 C 1.31706 * 122.11314 * 359.97438 * 17 16 15 19 19 C 1.38543 * 120.84914 * 0.02562 * 18 17 16 20 20 F 1.35104 * 120.54289 * 180.02562 * 19 18 17 21 21 H 0.96995 * 120.00252 * 359.97438 * 1 2 3 22 22 H 1.09004 * 109.47399 * 60.00027 * 9 7 2 23 23 H 1.09000 * 109.47329 * 300.00292 * 9 7 2 24 24 H 1.08996 * 109.47450 * 59.99715 * 10 9 7 25 25 H 1.09003 * 109.46760 * 299.99742 * 10 9 7 26 26 H 1.07997 * 120.48543 * 0.04153 * 15 14 12 27 27 H 1.08006 * 119.50062 * 179.74394 * 16 15 14 28 28 H 1.07994 * 119.57852 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4404 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0017 10 6 2.2455 -3.6620 -0.0015 11 8 1.5196 -4.9195 -0.0032 12 6 2.2532 -6.0491 -0.0027 13 8 3.4661 -5.9854 -0.0013 14 6 1.5819 -7.3668 -0.0038 15 6 0.1857 -7.4632 -0.0105 16 6 -0.3993 -8.7134 -0.0051 17 7 0.3368 -9.8074 0.0009 18 6 1.6532 -9.7655 0.0014 19 6 2.3254 -8.5541 -0.0038 20 9 3.6760 -8.5184 -0.0037 21 1 -0.4850 0.8400 0.0004 22 1 0.6249 -2.5563 -0.8920 23 1 0.6242 -2.5575 0.8880 24 1 2.8715 -3.6046 0.8890 25 1 2.8728 -3.6038 -0.8910 26 1 -0.4250 -6.5725 -0.0157 27 1 -1.4761 -8.7968 -0.0060 28 1 2.2159 -10.6873 0.0069 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000741376412.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:22 Heat of formation + Delta-G solvation = -101.952896 kcal Electronic energy + Delta-G solvation = -15938.578681 eV Core-core repulsion = 12869.235830 eV Total energy + Delta-G solvation = -3069.342851 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.074 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -49.17021 -40.63236 -39.55224 -36.26956 -33.50924 -32.99920 -31.21009 -30.31988 -26.01466 -24.67526 -23.73278 -21.59788 -20.82021 -18.38310 -17.62462 -17.43334 -16.65723 -16.40833 -15.96015 -15.70516 -15.20026 -14.53432 -14.52295 -13.85935 -13.78006 -13.32694 -12.93366 -12.46821 -12.34775 -11.36238 -11.14754 -10.86197 -10.83464 -10.61222 -10.25531 -10.01985 -9.76250 -9.69973 -9.37444 -9.31720 -8.50084 -6.16239 -4.20908 0.20790 0.58208 2.54463 2.74725 3.25274 3.31579 3.35604 3.37937 3.62976 4.05928 4.29343 4.34424 4.42135 4.69339 5.08256 5.20671 5.38065 5.44954 5.57828 5.95005 5.98202 6.18372 6.52271 6.73208 7.39036 7.45952 7.53131 7.77565 7.95996 8.16380 8.84377 9.43969 10.95222 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.050437 B = 0.004539 C = 0.004177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 555.011677 B = 6166.829561 C = 6701.390696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.900 3.100 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.528 4.528 8 H 0.060 0.940 9 C 0.025 3.975 10 C 0.075 3.925 11 O -0.347 6.347 12 C 0.498 3.502 13 O -0.493 6.493 14 C -0.110 4.110 15 C -0.084 4.084 16 C 0.078 3.922 17 N -0.439 5.439 18 C 0.066 3.934 19 C 0.107 3.893 20 F -0.106 7.106 21 H 0.264 0.736 22 H 0.029 0.971 23 H 0.029 0.971 24 H 0.062 0.938 25 H 0.062 0.938 26 H 0.165 0.835 27 H 0.174 0.826 28 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.578 -17.053 -0.015 17.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.141 4.141 3 Si 0.728 3.272 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.566 4.566 8 H 0.078 0.922 9 C -0.012 4.012 10 C 0.003 3.997 11 O -0.263 6.263 12 C 0.341 3.659 13 O -0.382 6.382 14 C -0.120 4.120 15 C -0.104 4.104 16 C -0.078 4.078 17 N -0.148 5.148 18 C -0.093 4.093 19 C 0.084 3.916 20 F -0.084 7.084 21 H 0.074 0.926 22 H 0.048 0.952 23 H 0.048 0.952 24 H 0.081 0.919 25 H 0.080 0.920 26 H 0.183 0.817 27 H 0.191 0.809 28 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -0.731 -17.635 -0.006 17.650 hybrid contribution 1.237 1.865 -0.015 2.238 sum 0.506 -15.769 -0.021 15.777 Atomic orbital electron populations 1.69964 1.06098 1.27097 1.49638 1.24979 0.94932 0.99424 0.94758 0.86457 0.79773 0.82719 0.78289 1.20440 1.20999 1.19694 1.20958 0.93222 0.90008 1.52421 0.92193 1.19186 0.94154 0.88861 0.98984 1.23783 0.96563 0.77986 1.01338 1.86551 1.41870 1.15466 1.82461 1.20679 0.85665 0.85236 0.74345 1.90875 1.14547 1.88112 1.44617 1.19915 0.94804 0.91092 1.06160 1.22654 0.92925 1.01107 0.93753 1.22914 1.01131 0.86876 0.96899 1.67563 1.05857 1.32761 1.08627 1.22938 0.90707 0.96124 0.99573 1.18955 0.78527 0.94164 0.99920 1.91627 1.27057 1.97079 1.92635 0.92639 0.95235 0.95227 0.91938 0.91954 0.81705 0.80904 0.80718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.87 13.29 55.43 0.74 -25.13 15 2 C 0.06 1.71 5.46 -17.82 -0.10 1.62 15 3 Si 0.90 21.13 29.54 -169.99 -5.02 16.11 15 4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 15 5 H -0.28 -6.58 7.11 56.52 0.40 -6.18 15 6 H -0.27 -6.28 7.11 56.52 0.40 -5.88 15 7 C -0.53 -14.58 9.11 -34.44 -0.31 -14.90 15 8 H 0.06 1.61 7.74 -52.49 -0.41 1.20 15 9 C 0.03 0.64 5.35 -27.89 -0.15 0.49 15 10 C 0.08 1.64 5.41 37.16 0.20 1.84 15 11 O -0.35 -6.69 9.58 -40.46 -0.39 -7.08 15 12 C 0.50 8.90 7.92 34.68 0.27 9.17 15 13 O -0.49 -10.07 15.27 -19.23 -0.29 -10.37 15 14 C -0.11 -1.53 5.91 -104.61 -0.62 -2.15 15 15 C -0.08 -0.92 9.70 -39.01 -0.38 -1.30 15 16 C 0.08 0.71 11.17 -17.61 -0.20 0.52 15 17 N -0.44 -4.55 10.33 -13.25 -0.14 -4.69 15 18 C 0.07 0.66 11.17 -17.49 -0.20 0.47 15 19 C 0.11 1.36 7.34 -38.77 -0.28 1.07 15 20 F -0.11 -1.53 15.72 2.25 0.04 -1.49 15 21 H 0.26 7.20 8.31 -40.82 -0.34 6.87 15 22 H 0.03 0.78 8.14 -51.93 -0.42 0.36 15 23 H 0.03 0.78 8.14 -51.93 -0.42 0.36 15 24 H 0.06 1.35 8.14 -51.93 -0.42 0.92 15 25 H 0.06 1.34 8.14 -51.93 -0.42 0.92 15 26 H 0.17 1.64 7.71 -52.49 -0.40 1.23 15 27 H 0.17 1.00 8.06 -52.48 -0.42 0.57 15 28 H 0.18 1.21 8.06 -52.49 -0.42 0.79 15 LS Contribution 266.02 15.07 4.01 4.01 Total: -1.00 -31.40 266.02 -5.30 -36.69 By element: Atomic # 1 Polarization: -2.39 SS G_CDS: -2.48 Total: -4.88 kcal Atomic # 6 Polarization: -1.42 SS G_CDS: -1.76 Total: -3.17 kcal Atomic # 7 Polarization: -30.42 SS G_CDS: 0.60 Total: -29.82 kcal Atomic # 8 Polarization: -16.76 SS G_CDS: -0.68 Total: -17.45 kcal Atomic # 9 Polarization: -1.53 SS G_CDS: 0.04 Total: -1.49 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -31.40 -5.30 -36.69 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000741376412.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.259 kcal (2) G-P(sol) polarization free energy of solvation -31.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds