Wall clock time and date at job start Sun Mar 29 2020 22:01:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86807 * 119.99582 * 2 1 4 4 H 1.48493 * 109.47224 * 270.00420 * 3 2 1 5 5 H 1.48505 * 109.46950 * 29.99971 * 3 2 1 6 6 H 1.48500 * 109.46963 * 149.99890 * 3 2 1 7 7 C 1.37875 * 120.00345 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99848 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00007 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47330 * 180.02562 * 9 7 2 11 11 O 1.45200 * 109.47592 * 180.02562 * 10 9 7 12 12 C 1.34689 * 117.00429 * 180.02562 * 11 10 9 13 13 O 1.21451 * 119.99731 * 359.97438 * 12 11 10 14 14 C 1.47886 * 120.00149 * 179.97438 * 12 11 10 15 15 C 1.39955 * 120.94592 * 0.24637 * 14 12 11 16 16 C 1.38035 * 119.02339 * 180.29775 * 15 14 12 17 17 N 1.31858 * 120.98904 * 359.72355 * 16 15 14 18 18 C 1.31706 * 122.11314 * 359.97438 * 17 16 15 19 19 C 1.38543 * 120.84914 * 0.02562 * 18 17 16 20 20 F 1.35104 * 120.54289 * 180.02562 * 19 18 17 21 21 H 0.96995 * 120.00252 * 359.97438 * 1 2 3 22 22 H 1.09004 * 109.47399 * 60.00027 * 9 7 2 23 23 H 1.09000 * 109.47329 * 300.00292 * 9 7 2 24 24 H 1.08996 * 109.47450 * 59.99715 * 10 9 7 25 25 H 1.09003 * 109.46760 * 299.99742 * 10 9 7 26 26 H 1.07997 * 120.48543 * 0.04153 * 15 14 12 27 27 H 1.08006 * 119.50062 * 179.74394 * 16 15 14 28 28 H 1.07994 * 119.57852 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4404 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0017 10 6 2.2455 -3.6620 -0.0015 11 8 1.5196 -4.9195 -0.0032 12 6 2.2532 -6.0491 -0.0027 13 8 3.4661 -5.9854 -0.0013 14 6 1.5819 -7.3668 -0.0038 15 6 0.1857 -7.4632 -0.0105 16 6 -0.3993 -8.7134 -0.0051 17 7 0.3368 -9.8074 0.0009 18 6 1.6532 -9.7655 0.0014 19 6 2.3254 -8.5541 -0.0038 20 9 3.6760 -8.5184 -0.0037 21 1 -0.4850 0.8400 0.0004 22 1 0.6249 -2.5563 -0.8920 23 1 0.6242 -2.5575 0.8880 24 1 2.8715 -3.6046 0.8890 25 1 2.8728 -3.6038 -0.8910 26 1 -0.4250 -6.5725 -0.0157 27 1 -1.4761 -8.7968 -0.0060 28 1 2.2159 -10.6873 0.0069 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000741376412.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:22 Heat of formation + Delta-G solvation = -121.243597 kcal Electronic energy + Delta-G solvation = -15939.415188 eV Core-core repulsion = 12869.235830 eV Total energy + Delta-G solvation = -3070.179358 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.074 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -50.19331 -41.83314 -40.73330 -37.85824 -35.50224 -34.08956 -32.28081 -32.05479 -27.59463 -26.16966 -24.67227 -23.20391 -22.41595 -19.63396 -18.78727 -18.48868 -18.36104 -17.81401 -17.50780 -16.91079 -16.61978 -16.15317 -15.34058 -15.20320 -14.85951 -14.52750 -14.49008 -14.38543 -13.29779 -13.23566 -13.07633 -12.65810 -12.62731 -12.16227 -11.69886 -11.59398 -11.46168 -11.23212 -10.86830 -10.62756 -10.16563 -8.29060 -6.41968 -0.82960 -0.24081 1.25462 1.33149 1.41977 1.43166 1.54295 2.37944 2.47951 2.70943 3.05756 3.24379 3.33865 3.50062 3.60389 4.15409 4.15671 4.25516 4.42444 4.63392 4.70164 4.72320 5.10698 5.37632 5.40356 5.43673 5.69788 6.03731 6.42954 6.57824 6.71100 7.27829 8.83369 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.050437 B = 0.004539 C = 0.004177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 555.011677 B = 6166.829561 C = 6701.390696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.009 3.991 3 Si 0.972 3.028 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.265 1.265 7 C -0.552 4.552 8 H 0.064 0.936 9 C 0.033 3.967 10 C 0.090 3.910 11 O -0.349 6.349 12 C 0.498 3.502 13 O -0.525 6.525 14 C -0.132 4.132 15 C -0.081 4.081 16 C 0.096 3.904 17 N -0.444 5.444 18 C 0.083 3.917 19 C 0.090 3.910 20 F -0.121 7.121 21 H 0.269 0.731 22 H 0.011 0.989 23 H 0.011 0.989 24 H 0.062 0.938 25 H 0.062 0.938 26 H 0.173 0.827 27 H 0.213 0.787 28 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.004 -17.997 -0.023 18.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.191 4.191 3 Si 0.795 3.205 4 H -0.196 1.196 5 H -0.203 1.203 6 H -0.189 1.189 7 C -0.590 4.590 8 H 0.082 0.918 9 C -0.005 4.005 10 C 0.017 3.983 11 O -0.265 6.265 12 C 0.343 3.657 13 O -0.415 6.415 14 C -0.142 4.142 15 C -0.101 4.101 16 C -0.060 4.060 17 N -0.152 5.152 18 C -0.076 4.076 19 C 0.068 3.932 20 F -0.100 7.100 21 H 0.077 0.923 22 H 0.029 0.971 23 H 0.029 0.971 24 H 0.080 0.920 25 H 0.080 0.920 26 H 0.190 0.810 27 H 0.230 0.770 28 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -1.159 -18.605 -0.015 18.641 hybrid contribution 1.278 2.042 -0.012 2.409 sum 0.118 -16.562 -0.028 16.563 Atomic orbital electron populations 1.70074 1.07690 1.28332 1.50244 1.25918 0.95845 1.03264 0.94045 0.85349 0.78539 0.77917 0.78666 1.19573 1.20304 1.18901 1.21355 0.93696 0.91245 1.52686 0.91819 1.18982 0.94252 0.90124 0.97098 1.23311 0.95330 0.78337 1.01310 1.86525 1.41712 1.15328 1.82898 1.21363 0.85504 0.85861 0.72972 1.90850 1.15919 1.88477 1.46267 1.19856 0.96206 0.89107 1.09026 1.22818 0.91506 1.02487 0.93309 1.23517 1.02775 0.85530 0.94153 1.67720 1.05864 1.33047 1.08602 1.23394 0.90725 0.96052 0.97386 1.19226 0.77980 0.94717 1.01306 1.91584 1.28246 1.97173 1.92967 0.92261 0.97063 0.97063 0.91960 0.91951 0.80975 0.76999 0.77567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.25 13.29 21.45 0.28 -53.97 15 2 C 0.01 0.48 5.46 84.65 0.46 0.94 15 3 Si 0.97 43.10 29.54 68.60 2.03 45.13 15 4 H -0.27 -11.59 7.11 99.48 0.71 -10.89 15 5 H -0.28 -11.95 7.11 99.48 0.71 -11.24 15 6 H -0.26 -11.34 7.11 99.48 0.71 -10.63 15 7 C -0.55 -30.85 9.11 25.60 0.23 -30.62 15 8 H 0.06 3.43 7.74 -2.91 -0.02 3.40 15 9 C 0.03 1.70 5.35 29.85 0.16 1.86 15 10 C 0.09 3.99 5.41 71.98 0.39 4.38 15 11 O -0.35 -13.66 9.58 -55.99 -0.54 -14.20 15 12 C 0.50 18.07 7.92 70.38 0.56 18.63 15 13 O -0.52 -21.98 15.27 19.99 0.31 -21.67 15 14 C -0.13 -3.62 5.91 -19.86 -0.12 -3.74 15 15 C -0.08 -1.62 9.70 22.64 0.22 -1.40 15 16 C 0.10 1.43 11.17 84.64 0.95 2.38 15 17 N -0.44 -7.71 10.33 -195.82 -2.02 -9.73 15 18 C 0.08 1.45 11.17 84.78 0.95 2.40 15 19 C 0.09 2.20 7.34 22.79 0.17 2.37 15 20 F -0.12 -3.51 15.72 44.97 0.71 -2.80 15 21 H 0.27 14.69 8.31 -92.71 -0.77 13.92 15 22 H 0.01 0.61 8.14 -2.38 -0.02 0.59 15 23 H 0.01 0.61 8.14 -2.39 -0.02 0.59 15 24 H 0.06 2.74 8.14 -2.39 -0.02 2.72 15 25 H 0.06 2.74 8.14 -2.39 -0.02 2.72 15 26 H 0.17 3.16 7.71 -2.91 -0.02 3.14 15 27 H 0.21 1.45 8.06 -2.91 -0.02 1.42 15 28 H 0.21 2.18 8.06 -2.91 -0.02 2.16 15 Total: -1.00 -68.03 266.02 5.91 -62.13 By element: Atomic # 1 Polarization: -3.27 SS G_CDS: 1.18 Total: -2.09 kcal Atomic # 6 Polarization: -6.76 SS G_CDS: 3.96 Total: -2.79 kcal Atomic # 7 Polarization: -61.96 SS G_CDS: -1.74 Total: -63.69 kcal Atomic # 8 Polarization: -35.64 SS G_CDS: -0.23 Total: -35.87 kcal Atomic # 9 Polarization: -3.51 SS G_CDS: 0.71 Total: -2.80 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Total: -68.03 5.91 -62.13 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000741376412.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.118 kcal (2) G-P(sol) polarization free energy of solvation -68.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds