Wall clock time and date at job start Sun Mar 29 2020 22:25:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38234 * 120.00614 * 2 1 4 4 C 1.38229 * 120.00967 * 179.97438 * 3 2 1 5 5 C 1.50702 * 119.98287 * 180.02562 * 4 3 2 6 6 N 1.46492 * 109.47175 * 90.00272 * 5 4 3 7 7 C 1.46501 * 119.99685 * 269.99565 * 6 5 4 8 8 C 1.36930 * 120.00404 * 89.99787 * 6 5 4 9 9 H 1.07999 * 120.00310 * 22.37402 * 8 6 5 10 10 C 1.38816 * 120.00458 * 202.37577 * 8 6 5 11 11 N 1.31625 * 119.99602 * 11.32640 * 10 8 6 12 12 Si 1.86796 * 120.00332 * 191.32539 * 10 8 6 13 13 H 1.48502 * 109.47188 * 90.00214 * 12 10 8 14 14 H 1.48509 * 109.47113 * 209.99940 * 12 10 8 15 15 H 1.48501 * 109.47270 * 329.99722 * 12 10 8 16 16 C 1.38256 * 120.02757 * 0.02562 * 4 3 2 17 17 C 1.38194 * 120.01294 * 359.97438 * 16 4 3 18 18 C 1.38331 * 120.00392 * 179.97438 * 2 1 3 19 19 Cl 1.73599 * 120.01351 * 359.73849 * 18 2 1 20 20 H 1.09004 * 109.46569 * 270.01930 * 1 2 3 21 21 H 1.08997 * 109.47096 * 30.01553 * 1 2 3 22 22 H 1.08997 * 109.47611 * 150.02204 * 1 2 3 23 23 H 1.07998 * 119.99609 * 359.96078 * 3 2 1 24 24 H 1.09002 * 109.46674 * 209.99897 * 5 4 3 25 25 H 1.08998 * 109.46837 * 329.99541 * 5 4 3 26 26 H 1.09005 * 109.47330 * 94.20860 * 7 6 5 27 27 H 1.09004 * 109.47080 * 214.20571 * 7 6 5 28 28 H 1.09002 * 109.47468 * 334.20390 * 7 6 5 29 29 H 0.96996 * 120.00054 * 180.02562 * 11 10 8 30 30 H 1.08003 * 119.99507 * 179.97438 * 16 4 3 31 31 H 1.08004 * 120.00863 * 180.02562 * 17 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1971 0.0000 4 6 3.5806 1.1972 0.0005 5 6 4.3336 2.5025 0.0011 6 7 4.5772 2.9252 1.3824 7 6 3.6000 3.7706 2.0728 8 6 5.7181 2.5302 2.0283 9 1 6.5860 2.2329 1.4584 10 6 5.7594 2.5117 3.4157 11 7 4.6498 2.6550 4.1091 12 14 7.3896 2.2834 4.2987 13 1 8.0089 3.6104 4.5457 14 1 7.1586 1.5961 5.5948 15 1 8.2973 1.4622 3.4579 16 6 4.2725 0.0002 0.0005 17 6 3.5825 -1.1971 0.0005 18 6 2.1987 -1.1979 0.0005 19 17 1.3312 -2.7016 0.0081 20 1 -0.3632 0.0003 1.0277 21 1 -0.3633 0.8898 -0.5141 22 1 -0.3634 -0.8901 -0.5135 23 1 1.6584 2.1324 -0.0006 24 1 5.2863 2.3726 -0.5124 25 1 3.7445 3.2620 -0.5128 26 1 2.9180 3.1432 2.6469 27 1 4.1203 4.4521 2.7458 28 1 3.0344 4.3455 1.3395 29 1 4.6786 2.6424 5.0785 30 1 5.3526 0.0009 0.0005 31 1 4.1231 -2.1321 0.0010 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000757160495.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:25:21 Heat of formation + Delta-G solvation = 30.692546 kcal Electronic energy + Delta-G solvation = -14794.286627 eV Core-core repulsion = 12294.865185 eV Total energy + Delta-G solvation = -2499.421443 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.077 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.03767 -36.30214 -35.38335 -32.59525 -31.65352 -29.95939 -26.78849 -25.95019 -25.53278 -22.00644 -21.49205 -19.76565 -16.80763 -16.31410 -15.28789 -15.00319 -14.44807 -13.88088 -13.49272 -13.29350 -13.16473 -12.71314 -12.24988 -12.10106 -11.92090 -11.43085 -11.10780 -11.02610 -10.81674 -10.73398 -10.61883 -10.36215 -10.22404 -10.02706 -9.90388 -8.60431 -8.32396 -7.97484 -6.83366 -5.78099 -3.22324 1.71168 1.82669 2.52137 3.35548 3.41603 3.43110 4.14095 4.48357 5.14614 5.17220 5.36761 5.51747 5.67566 5.73566 5.82734 5.83410 6.00390 6.03349 6.16969 6.31614 6.53506 6.59483 6.70666 6.75056 6.86221 7.26562 7.34155 7.40591 7.69231 7.76602 8.33354 9.17210 9.79244 10.28047 11.26329 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.029403 B = 0.006900 C = 0.006368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.067167 B = 4057.175683 C = 4395.726631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.082 4.082 3 C -0.105 4.105 4 C -0.068 4.068 5 C 0.178 3.822 6 N -0.589 5.589 7 C 0.162 3.838 8 C -0.255 4.255 9 H 0.071 0.929 10 C 0.004 3.996 11 N -0.903 5.903 12 Si 0.906 3.094 13 H -0.287 1.287 14 H -0.291 1.291 15 H -0.279 1.279 16 C -0.097 4.097 17 C -0.110 4.110 18 C -0.054 4.054 19 Cl -0.093 7.093 20 H 0.070 0.930 21 H 0.065 0.935 22 H 0.067 0.933 23 H 0.121 0.879 24 H 0.055 0.945 25 H 0.049 0.951 26 H 0.029 0.971 27 H 0.047 0.953 28 H -0.002 1.002 29 H 0.253 0.747 30 H 0.126 0.874 31 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.723 -4.785 -8.801 11.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.083 4.083 3 C -0.124 4.124 4 C -0.073 4.073 5 C 0.051 3.949 6 N -0.309 5.309 7 C 0.018 3.982 8 C -0.384 4.384 9 H 0.088 0.912 10 C -0.195 4.195 11 N -0.546 5.546 12 Si 0.736 3.264 13 H -0.214 1.214 14 H -0.217 1.217 15 H -0.204 1.204 16 C -0.116 4.116 17 C -0.128 4.128 18 C -0.081 4.081 19 Cl -0.065 7.065 20 H 0.088 0.912 21 H 0.084 0.916 22 H 0.085 0.915 23 H 0.139 0.861 24 H 0.074 0.926 25 H 0.068 0.932 26 H 0.047 0.953 27 H 0.066 0.934 28 H 0.016 0.984 29 H 0.064 0.936 30 H 0.144 0.856 31 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -5.804 -4.848 -8.577 11.435 hybrid contribution 0.722 -0.506 0.877 1.243 sum -5.082 -5.354 -7.700 10.667 Atomic orbital electron populations 1.20790 0.91161 1.02555 1.02463 1.19626 0.96037 0.91637 1.00976 1.20782 0.93925 0.96325 1.01362 1.21291 0.93908 0.98123 0.93945 1.20021 0.96755 0.89735 0.88387 1.44143 1.21735 1.54835 1.10236 1.20847 0.91614 0.92674 0.93070 1.19241 0.89451 1.40655 0.89064 0.91156 1.25089 0.96953 1.00577 0.96908 1.70072 1.24944 1.53848 1.05786 0.86231 0.83162 0.77808 0.79207 1.21378 1.21698 1.20399 1.20925 0.99995 0.91088 0.99604 1.20921 0.91788 0.98887 1.01240 1.20574 0.92142 0.85535 1.09808 1.98299 1.77410 1.33462 1.97281 0.91157 0.91607 0.91456 0.86096 0.92623 0.93236 0.95268 0.93399 0.98370 0.93627 0.85645 0.85974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.53 9.61 36.01 0.35 -1.18 16 2 C -0.08 -1.37 5.88 -104.59 -0.62 -1.99 16 3 C -0.10 -1.87 9.36 -39.59 -0.37 -2.25 16 4 C -0.07 -1.32 5.46 -104.62 -0.57 -1.89 16 5 C 0.18 3.57 5.83 -5.20 -0.03 3.54 16 6 N -0.59 -14.47 2.91 -182.50 -0.53 -15.00 16 7 C 0.16 3.95 9.01 59.85 0.54 4.49 16 8 C -0.25 -6.82 9.67 -15.06 -0.15 -6.97 16 9 H 0.07 1.83 7.84 -52.49 -0.41 1.42 16 10 C 0.00 0.10 5.13 -17.43 -0.09 0.01 16 11 N -0.90 -26.14 10.59 55.49 0.59 -25.55 16 12 Si 0.91 21.67 29.57 -169.99 -5.03 16.64 16 13 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 14 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 15 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 16 C -0.10 -1.81 9.70 -39.59 -0.38 -2.19 16 17 C -0.11 -1.89 9.83 -39.55 -0.39 -2.27 16 18 C -0.05 -0.91 6.31 -39.50 -0.25 -1.16 16 19 Cl -0.09 -1.37 27.30 -51.86 -1.42 -2.78 16 20 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 21 H 0.06 0.77 8.09 -51.93 -0.42 0.35 16 22 H 0.07 0.84 6.91 -51.93 -0.36 0.48 16 23 H 0.12 2.00 8.06 -52.49 -0.42 1.58 16 24 H 0.06 1.06 7.98 -51.93 -0.41 0.65 16 25 H 0.05 0.89 7.81 -51.93 -0.41 0.48 16 26 H 0.03 0.77 7.42 -51.93 -0.39 0.39 16 27 H 0.05 1.25 7.19 -51.93 -0.37 0.88 16 28 H 0.00 -0.05 7.84 -51.93 -0.41 -0.45 16 29 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 30 H 0.13 2.26 8.06 -52.48 -0.42 1.83 16 31 H 0.12 1.84 8.06 -52.48 -0.42 1.42 16 LS Contribution 279.19 15.07 4.21 4.21 Total: -1.00 -29.03 279.19 -8.14 -37.17 By element: Atomic # 1 Polarization: 1.18 SS G_CDS: -4.00 Total: -2.82 kcal Atomic # 6 Polarization: -9.90 SS G_CDS: -1.96 Total: -11.86 kcal Atomic # 7 Polarization: -40.61 SS G_CDS: 0.06 Total: -40.56 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.03 Total: 16.64 kcal Atomic # 17 Polarization: -1.37 SS G_CDS: -1.42 Total: -2.78 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -29.03 -8.14 -37.17 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000757160495.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.866 kcal (2) G-P(sol) polarization free energy of solvation -29.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.174 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds