Wall clock time and date at job start Sun Mar 29 2020 22:25:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38234 * 120.00614 * 2 1 4 4 C 1.38229 * 120.00967 * 179.97438 * 3 2 1 5 5 C 1.50702 * 119.98287 * 180.02562 * 4 3 2 6 6 N 1.46492 * 109.47175 * 90.00272 * 5 4 3 7 7 C 1.46501 * 119.99685 * 269.99565 * 6 5 4 8 8 C 1.36930 * 120.00404 * 89.99787 * 6 5 4 9 9 H 1.07999 * 120.00310 * 22.37402 * 8 6 5 10 10 C 1.38816 * 120.00458 * 202.37577 * 8 6 5 11 11 N 1.31625 * 119.99602 * 11.32640 * 10 8 6 12 12 Si 1.86796 * 120.00332 * 191.32539 * 10 8 6 13 13 H 1.48502 * 109.47188 * 90.00214 * 12 10 8 14 14 H 1.48509 * 109.47113 * 209.99940 * 12 10 8 15 15 H 1.48501 * 109.47270 * 329.99722 * 12 10 8 16 16 C 1.38256 * 120.02757 * 0.02562 * 4 3 2 17 17 C 1.38194 * 120.01294 * 359.97438 * 16 4 3 18 18 C 1.38331 * 120.00392 * 179.97438 * 2 1 3 19 19 Cl 1.73599 * 120.01351 * 359.73849 * 18 2 1 20 20 H 1.09004 * 109.46569 * 270.01930 * 1 2 3 21 21 H 1.08997 * 109.47096 * 30.01553 * 1 2 3 22 22 H 1.08997 * 109.47611 * 150.02204 * 1 2 3 23 23 H 1.07998 * 119.99609 * 359.96078 * 3 2 1 24 24 H 1.09002 * 109.46674 * 209.99897 * 5 4 3 25 25 H 1.08998 * 109.46837 * 329.99541 * 5 4 3 26 26 H 1.09005 * 109.47330 * 94.20860 * 7 6 5 27 27 H 1.09004 * 109.47080 * 214.20571 * 7 6 5 28 28 H 1.09002 * 109.47468 * 334.20390 * 7 6 5 29 29 H 0.96996 * 120.00054 * 180.02562 * 11 10 8 30 30 H 1.08003 * 119.99507 * 179.97438 * 16 4 3 31 31 H 1.08004 * 120.00863 * 180.02562 * 17 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1971 0.0000 4 6 3.5806 1.1972 0.0005 5 6 4.3336 2.5025 0.0011 6 7 4.5772 2.9252 1.3824 7 6 3.6000 3.7706 2.0728 8 6 5.7181 2.5302 2.0283 9 1 6.5860 2.2329 1.4584 10 6 5.7594 2.5117 3.4157 11 7 4.6498 2.6550 4.1091 12 14 7.3896 2.2834 4.2987 13 1 8.0089 3.6104 4.5457 14 1 7.1586 1.5961 5.5948 15 1 8.2973 1.4622 3.4579 16 6 4.2725 0.0002 0.0005 17 6 3.5825 -1.1971 0.0005 18 6 2.1987 -1.1979 0.0005 19 17 1.3312 -2.7016 0.0081 20 1 -0.3632 0.0003 1.0277 21 1 -0.3633 0.8898 -0.5141 22 1 -0.3634 -0.8901 -0.5135 23 1 1.6584 2.1324 -0.0006 24 1 5.2863 2.3726 -0.5124 25 1 3.7445 3.2620 -0.5128 26 1 2.9180 3.1432 2.6469 27 1 4.1203 4.4521 2.7458 28 1 3.0344 4.3455 1.3395 29 1 4.6786 2.6424 5.0785 30 1 5.3526 0.0009 0.0005 31 1 4.1231 -2.1321 0.0010 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000757160495.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:25:20 Heat of formation + Delta-G solvation = 16.215214 kcal Electronic energy + Delta-G solvation = -14794.914412 eV Core-core repulsion = 12294.865185 eV Total energy + Delta-G solvation = -2500.049227 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.077 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.41368 -37.74332 -37.01626 -34.08240 -33.27272 -31.61693 -28.25944 -27.65280 -27.22778 -23.64490 -23.01676 -21.25239 -18.75294 -17.69086 -16.88186 -16.66297 -15.91250 -15.54658 -15.09908 -14.83573 -14.75586 -14.03416 -13.82038 -13.30584 -13.28308 -13.09447 -12.88091 -12.58796 -12.46259 -12.34857 -12.10353 -12.03539 -11.87436 -11.81112 -11.54194 -10.64088 -9.67879 -9.36710 -8.79750 -7.82522 -5.29395 0.32503 0.45871 1.22360 1.46724 1.47387 1.55600 2.49858 2.76770 3.33839 3.85075 3.89641 3.93263 4.13666 4.41047 4.46188 4.67423 4.75406 4.78988 4.81143 4.87773 4.97862 5.09591 5.28219 5.31720 5.39045 5.50598 5.63879 5.74397 5.82768 6.02442 6.32809 7.15270 7.86036 8.29545 9.20695 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.029403 B = 0.006900 C = 0.006368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.067167 B = 4057.175683 C = 4395.726631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.087 4.087 3 C -0.112 4.112 4 C -0.087 4.087 5 C 0.178 3.822 6 N -0.606 5.606 7 C 0.178 3.822 8 C -0.256 4.256 9 H 0.075 0.925 10 C -0.052 4.052 11 N -0.937 5.937 12 Si 0.965 3.035 13 H -0.285 1.285 14 H -0.299 1.299 15 H -0.267 1.267 16 C -0.112 4.112 17 C -0.114 4.114 18 C -0.060 4.060 19 Cl -0.072 7.072 20 H 0.072 0.928 21 H 0.084 0.916 22 H 0.077 0.923 23 H 0.133 0.867 24 H 0.062 0.938 25 H 0.072 0.928 26 H 0.000 1.000 27 H 0.019 0.981 28 H 0.033 0.967 29 H 0.246 0.754 30 H 0.125 0.875 31 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.195 -5.518 -9.968 12.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.087 4.087 3 C -0.131 4.131 4 C -0.090 4.090 5 C 0.052 3.948 6 N -0.328 5.328 7 C 0.033 3.967 8 C -0.386 4.386 9 H 0.092 0.908 10 C -0.247 4.247 11 N -0.583 5.583 12 Si 0.793 3.207 13 H -0.212 1.212 14 H -0.226 1.226 15 H -0.192 1.192 16 C -0.132 4.132 17 C -0.133 4.133 18 C -0.087 4.087 19 Cl -0.043 7.043 20 H 0.091 0.909 21 H 0.103 0.897 22 H 0.096 0.904 23 H 0.151 0.849 24 H 0.080 0.920 25 H 0.090 0.910 26 H 0.018 0.982 27 H 0.038 0.962 28 H 0.052 0.948 29 H 0.055 0.945 30 H 0.143 0.857 31 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -6.276 -5.601 -9.799 12.914 hybrid contribution 0.782 -0.358 1.086 1.385 sum -5.494 -5.959 -8.713 11.900 Atomic orbital electron populations 1.20849 0.88816 1.04100 1.03002 1.20005 0.97847 0.91163 0.99734 1.20991 0.93565 0.97467 1.01113 1.21222 0.94660 0.97754 0.95374 1.20118 0.97729 0.90867 0.86046 1.44270 1.21438 1.55666 1.11379 1.20566 0.90964 0.91924 0.93279 1.19547 0.90595 1.39089 0.89364 0.90769 1.25782 0.99685 1.01501 0.97779 1.70242 1.26643 1.56153 1.05298 0.85297 0.80017 0.77633 0.77715 1.21206 1.22621 1.19162 1.21053 1.00218 0.91659 1.00225 1.21143 0.92277 0.99188 1.00702 1.20800 0.92389 0.86707 1.08812 1.98306 1.76859 1.31996 1.97130 0.90950 0.89700 0.90390 0.84906 0.92006 0.90978 0.98163 0.96234 0.94844 0.94474 0.85736 0.84151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.70 9.61 71.24 0.68 -2.01 16 2 C -0.09 -2.72 5.88 -19.84 -0.12 -2.84 16 3 C -0.11 -3.84 9.36 22.27 0.21 -3.63 16 4 C -0.09 -3.25 5.46 -19.86 -0.11 -3.36 16 5 C 0.18 6.90 5.83 85.64 0.50 7.40 16 6 N -0.61 -29.53 2.91 -731.31 -2.13 -31.65 16 7 C 0.18 8.64 9.01 127.77 1.15 9.79 16 8 C -0.26 -13.68 9.67 84.04 0.81 -12.87 16 9 H 0.07 3.82 7.84 -2.91 -0.02 3.80 16 10 C -0.05 -2.91 5.13 84.86 0.44 -2.48 16 11 N -0.94 -55.46 10.59 21.65 0.23 -55.23 16 12 Si 0.96 44.93 29.57 68.60 2.03 46.96 16 13 H -0.29 -13.06 7.11 99.48 0.71 -12.36 16 14 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 15 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 16 C -0.11 -4.09 9.70 22.26 0.22 -3.88 16 17 C -0.11 -3.77 9.83 22.29 0.22 -3.55 16 18 C -0.06 -1.91 6.31 22.32 0.14 -1.77 16 19 Cl -0.07 -1.93 27.30 -2.72 -0.07 -2.01 16 20 H 0.07 1.76 8.14 -2.38 -0.02 1.74 16 21 H 0.08 1.73 8.09 -2.39 -0.02 1.71 16 22 H 0.08 1.71 6.91 -2.39 -0.02 1.70 16 23 H 0.13 4.11 8.06 -2.91 -0.02 4.09 16 24 H 0.06 2.29 7.98 -2.39 -0.02 2.27 16 25 H 0.07 2.43 7.81 -2.39 -0.02 2.41 16 26 H 0.00 0.00 7.42 -2.38 -0.02 -0.02 16 27 H 0.02 1.02 7.19 -2.38 -0.02 1.00 16 28 H 0.03 1.35 7.84 -2.39 -0.02 1.33 16 29 H 0.25 14.28 8.31 -92.71 -0.77 13.50 16 30 H 0.12 4.43 8.06 -2.91 -0.02 4.41 16 31 H 0.14 3.98 8.06 -2.91 -0.02 3.96 16 Total: -1.00 -61.47 279.19 5.31 -56.16 By element: Atomic # 1 Polarization: 3.85 SS G_CDS: 1.11 Total: 4.96 kcal Atomic # 6 Polarization: -23.33 SS G_CDS: 4.14 Total: -19.19 kcal Atomic # 7 Polarization: -84.99 SS G_CDS: -1.90 Total: -86.89 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Atomic # 17 Polarization: -1.93 SS G_CDS: -0.07 Total: -2.01 kcal Total: -61.47 5.31 -56.16 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000757160495.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.380 kcal (2) G-P(sol) polarization free energy of solvation -61.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.165 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds