Wall clock time and date at job start Sun Mar 29 2020 22:00:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 120.00251 * 2 1 4 4 H 1.48498 * 109.47149 * 239.99468 * 3 2 1 5 5 H 1.48495 * 109.46944 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.46917 * 119.99252 * 3 2 1 7 7 C 1.37880 * 119.99743 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00132 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99985 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47058 * 179.97438 * 9 7 2 11 11 O 1.45201 * 109.46695 * 180.02562 * 10 9 7 12 12 C 1.34719 * 116.99405 * 180.02562 * 11 10 9 13 13 O 1.21467 * 120.00171 * 359.97438 * 12 11 10 14 14 C 1.47730 * 119.99408 * 180.02562 * 12 11 10 15 15 C 1.39604 * 120.55486 * 0.02562 * 14 12 11 16 16 N 1.31653 * 120.61629 * 180.02562 * 15 14 12 17 17 C 1.31940 * 121.91110 * 359.97438 * 16 15 14 18 18 C 1.38552 * 121.05850 * 359.97438 * 17 16 15 19 19 F 1.35098 * 120.37351 * 180.02562 * 18 17 16 20 20 C 1.38598 * 119.25607 * 0.02562 * 18 17 16 21 21 H 0.97003 * 119.99635 * 0.02562 * 1 2 3 22 22 H 1.09002 * 109.47084 * 59.99519 * 9 7 2 23 23 H 1.08998 * 109.47109 * 300.00256 * 9 7 2 24 24 H 1.08995 * 109.46568 * 60.00529 * 10 9 7 25 25 H 1.08995 * 109.47370 * 300.00480 * 10 9 7 26 26 H 1.08003 * 119.69554 * 359.97438 * 15 14 12 27 27 H 1.07999 * 119.47550 * 180.02562 * 17 16 15 28 28 H 1.07994 * 120.87149 * 180.25166 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1031 1.6963 -1.2124 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6622 0.0005 11 8 1.5190 -4.9196 -0.0001 12 6 2.2527 -6.0494 0.0004 13 8 3.4657 -5.9859 0.0008 14 6 1.5819 -7.3656 -0.0008 15 6 0.1885 -7.4520 -0.0029 16 7 -0.4106 -8.6243 -0.0034 17 6 0.2694 -9.7550 -0.0025 18 6 1.6549 -9.7559 -0.0014 19 9 2.3373 -10.9219 -0.0010 20 6 2.3331 -8.5472 -0.0008 21 1 -0.4850 0.8401 -0.0004 22 1 0.6245 -2.5571 -0.8897 23 1 0.6239 -2.5567 0.8902 24 1 2.8716 -3.6044 0.8906 25 1 2.8718 -3.6044 -0.8894 26 1 -0.4036 -6.5487 -0.0032 27 1 -0.2625 -10.6950 -0.0034 28 1 3.4126 -8.5175 -0.0041 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000759428630.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:35 Heat of formation + Delta-G solvation = -104.855855 kcal Electronic energy + Delta-G solvation = -15698.830796 eV Core-core repulsion = 12629.362063 eV Total energy + Delta-G solvation = -3069.468732 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.074 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -49.32879 -40.76491 -39.46140 -36.31372 -33.43658 -32.92281 -31.54009 -30.22835 -25.96150 -24.53983 -23.92046 -21.53476 -20.80568 -18.48935 -17.75891 -17.26148 -16.66528 -16.32483 -16.00522 -15.94634 -15.85064 -14.55658 -14.22547 -13.90703 -13.53874 -13.22870 -13.03096 -12.69072 -12.39166 -11.35141 -11.16833 -10.91575 -10.81588 -10.61798 -10.32344 -9.98444 -9.76421 -9.70194 -9.38094 -9.37380 -8.48463 -6.14675 -4.19532 0.12928 0.62989 2.46611 2.76145 3.27552 3.31962 3.34756 3.38442 3.66929 4.00144 4.33671 4.34230 4.44016 4.55640 4.83456 5.22021 5.32325 5.40574 5.65927 5.95530 5.98944 6.14949 6.53401 6.73996 7.35836 7.47667 7.55078 7.78578 7.97083 8.17604 8.85546 9.45167 10.96648 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.062956 B = 0.004086 C = 0.003848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 444.647883 B = 6850.863026 C = 7275.065167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.062 3.938 3 Si 0.901 3.099 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.529 4.529 8 H 0.059 0.941 9 C 0.025 3.975 10 C 0.076 3.924 11 O -0.348 6.348 12 C 0.506 3.494 13 O -0.506 6.506 14 C -0.140 4.140 15 C 0.151 3.849 16 N -0.462 5.462 17 C 0.102 3.898 18 C 0.036 3.964 19 F -0.126 7.126 20 C -0.051 4.051 21 H 0.265 0.735 22 H 0.030 0.970 23 H 0.030 0.970 24 H 0.062 0.938 25 H 0.062 0.938 26 H 0.186 0.814 27 H 0.174 0.826 28 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.874 -17.827 -0.007 17.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.141 4.141 3 Si 0.728 3.272 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.567 4.567 8 H 0.077 0.923 9 C -0.012 4.012 10 C 0.004 3.996 11 O -0.264 6.264 12 C 0.349 3.651 13 O -0.396 6.396 14 C -0.144 4.144 15 C -0.006 4.006 16 N -0.170 5.170 17 C -0.056 4.056 18 C 0.014 3.986 19 F -0.105 7.105 20 C -0.077 4.077 21 H 0.074 0.926 22 H 0.048 0.952 23 H 0.048 0.952 24 H 0.081 0.919 25 H 0.080 0.920 26 H 0.203 0.797 27 H 0.191 0.809 28 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 0.176 -17.695 -0.008 17.695 hybrid contribution 1.700 0.771 0.000 1.866 sum 1.876 -16.923 -0.008 17.027 Atomic orbital electron populations 1.69959 1.06083 1.27194 1.49479 1.24980 0.94934 0.99404 0.94780 0.86518 0.79481 0.82425 0.78794 1.20060 1.21090 1.20054 1.20920 0.93155 0.90039 1.52594 0.92267 1.19188 0.94168 0.88842 0.99044 1.23775 0.96532 0.78023 1.01301 1.86565 1.41893 1.15559 1.82369 1.20664 0.85576 0.85207 0.73646 1.90825 1.14841 1.88224 1.45674 1.20229 0.95123 0.91751 1.07267 1.23510 0.91023 0.96654 0.89439 1.67907 1.39348 0.97776 1.11934 1.23252 0.89354 0.98547 0.94440 1.18579 0.91481 0.81991 1.06509 1.91552 1.79728 1.45163 1.94017 1.21791 1.02578 0.89628 0.93697 0.92584 0.95201 0.95189 0.91943 0.91950 0.79727 0.80921 0.82087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.81 13.29 55.43 0.74 -25.08 15 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 15 3 Si 0.90 21.04 29.54 -169.99 -5.02 16.02 15 4 H -0.28 -6.32 7.11 56.52 0.40 -5.92 15 5 H -0.29 -6.58 7.11 56.52 0.40 -6.18 15 6 H -0.28 -6.32 7.11 56.52 0.40 -5.92 15 7 C -0.53 -14.49 9.11 -34.44 -0.31 -14.80 15 8 H 0.06 1.56 7.74 -52.49 -0.41 1.16 15 9 C 0.02 0.62 5.35 -27.88 -0.15 0.47 15 10 C 0.08 1.60 5.41 37.16 0.20 1.80 15 11 O -0.35 -6.45 9.50 -40.54 -0.39 -6.84 15 12 C 0.51 8.42 7.91 34.61 0.27 8.70 15 13 O -0.51 -9.51 16.21 -19.24 -0.31 -9.82 15 14 C -0.14 -1.84 5.89 -104.84 -0.62 -2.45 15 15 C 0.15 1.82 10.79 -17.12 -0.18 1.63 15 16 N -0.46 -5.25 10.34 -12.84 -0.13 -5.38 15 17 C 0.10 0.95 11.16 -17.39 -0.19 0.76 15 18 C 0.04 0.36 7.33 -39.33 -0.29 0.07 15 19 F -0.13 -1.23 17.28 2.25 0.04 -1.19 15 20 C -0.05 -0.57 9.70 -38.78 -0.38 -0.95 15 21 H 0.26 7.24 8.31 -40.82 -0.34 6.90 15 22 H 0.03 0.78 8.14 -51.93 -0.42 0.36 15 23 H 0.03 0.79 8.14 -51.93 -0.42 0.36 15 24 H 0.06 1.30 8.14 -51.93 -0.42 0.88 15 25 H 0.06 1.30 8.14 -51.93 -0.42 0.88 15 26 H 0.19 2.10 7.62 -52.48 -0.40 1.70 15 27 H 0.17 1.05 8.06 -52.49 -0.42 0.62 15 28 H 0.16 1.72 7.73 -52.49 -0.41 1.31 15 LS Contribution 267.61 15.07 4.03 4.03 Total: -1.00 -30.02 267.61 -5.25 -35.27 By element: Atomic # 1 Polarization: -1.38 SS G_CDS: -2.46 Total: -3.84 kcal Atomic # 6 Polarization: -1.42 SS G_CDS: -1.75 Total: -3.17 kcal Atomic # 7 Polarization: -31.07 SS G_CDS: 0.60 Total: -30.46 kcal Atomic # 8 Polarization: -15.96 SS G_CDS: -0.70 Total: -16.65 kcal Atomic # 9 Polarization: -1.23 SS G_CDS: 0.04 Total: -1.19 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -30.02 -5.25 -35.27 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759428630.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.584 kcal (2) G-P(sol) polarization free energy of solvation -30.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds