Wall clock time and date at job start Sun Mar 29 2020 22:00:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99931 * 2 1 4 4 H 1.48505 * 109.46819 * 239.99713 * 3 2 1 5 5 H 1.48494 * 109.47285 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47196 * 120.00210 * 3 2 1 7 7 C 1.37876 * 119.99769 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99840 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00344 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.46953 * 180.02562 * 9 7 2 11 11 O 1.45206 * 109.46777 * 180.02562 * 10 9 7 12 12 C 1.34675 * 117.00050 * 179.97438 * 11 10 9 13 13 O 1.21440 * 119.99786 * 0.02562 * 12 11 10 14 14 C 1.48054 * 120.00377 * 179.97438 * 12 11 10 15 15 C 1.39263 * 119.71346 * 179.72821 * 14 12 11 16 16 C 1.38666 * 119.11670 * 179.75393 * 15 14 12 17 17 C 1.38500 * 118.52574 * 0.50670 * 16 15 14 18 18 C 1.38918 * 119.33472 * 359.73470 * 17 16 15 19 19 F 1.35100 * 119.58058 * 179.97438 * 18 17 16 20 20 N 1.31684 * 120.83966 * 0.02562 * 18 17 16 21 21 H 0.97000 * 120.00540 * 0.02562 * 1 2 3 22 22 H 1.09000 * 109.46974 * 59.99987 * 9 7 2 23 23 H 1.09001 * 109.46547 * 300.00078 * 9 7 2 24 24 H 1.09000 * 109.47486 * 60.00062 * 10 9 7 25 25 H 1.09001 * 109.47362 * 299.99339 * 10 9 7 26 26 H 1.08001 * 120.44289 * 0.02562 * 15 14 12 27 27 H 1.07994 * 120.73909 * 180.21986 * 16 15 14 28 28 H 1.07992 * 120.33674 * 179.74798 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6621 0.0027 11 8 1.5192 -4.9196 0.0033 12 6 2.2527 -6.0491 0.0036 13 8 3.4654 -5.9855 0.0040 14 6 1.5806 -7.3683 0.0048 15 6 2.3449 -8.5324 -0.0006 16 6 1.7027 -9.7613 0.0057 17 6 0.3179 -9.7839 0.0064 18 6 -0.3824 -8.5841 0.0064 19 9 -1.7333 -8.6003 0.0065 20 7 0.2539 -7.4312 0.0052 21 1 -0.4851 0.8400 -0.0004 22 1 0.6240 -2.5576 -0.8880 23 1 0.6247 -2.5563 0.8920 24 1 2.8719 -3.6036 0.8927 25 1 2.8719 -3.6052 -0.8873 26 1 3.4236 -8.4788 -0.0051 27 1 2.2696 -10.6805 0.0054 28 1 -0.2123 -10.7247 0.0071 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000783208207.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:37 Heat of formation + Delta-G solvation = -95.180425 kcal Electronic energy + Delta-G solvation = -15765.671773 eV Core-core repulsion = 12696.622599 eV Total energy + Delta-G solvation = -3069.049174 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.074 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -49.21317 -40.77102 -39.35632 -36.22195 -33.42521 -33.10401 -31.47175 -30.20270 -25.99940 -24.57868 -23.72941 -21.62089 -20.75430 -18.46268 -18.01299 -16.65936 -16.51244 -16.46181 -15.97401 -15.88696 -15.85489 -14.51873 -14.13151 -13.74951 -13.59412 -13.04076 -12.93241 -12.53656 -12.34018 -11.25078 -11.06831 -10.88551 -10.74478 -10.60005 -10.46782 -10.02651 -9.67313 -9.61236 -9.40124 -9.29515 -8.41829 -6.07524 -4.12502 0.14180 0.70722 2.37648 2.74399 3.27149 3.31626 3.35770 3.39032 3.42913 4.05328 4.39405 4.42920 4.56268 4.65817 5.03094 5.28591 5.33493 5.43865 5.59506 6.01900 6.07127 6.14624 6.62304 6.79798 7.15338 7.57516 7.65604 7.86510 8.07960 8.25353 8.92867 9.51575 11.03885 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.043384 B = 0.004499 C = 0.004088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.237362 B = 6222.171659 C = 6846.961546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.061 3.939 3 Si 0.901 3.099 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.528 4.528 8 H 0.059 0.941 9 C 0.025 3.975 10 C 0.072 3.928 11 O -0.328 6.328 12 C 0.514 3.486 13 O -0.501 6.501 14 C 0.140 3.860 15 C -0.122 4.122 16 C -0.055 4.055 17 C -0.170 4.170 18 C 0.307 3.693 19 F -0.106 7.106 20 N -0.463 5.463 21 H 0.264 0.736 22 H 0.030 0.970 23 H 0.030 0.970 24 H 0.062 0.938 25 H 0.062 0.938 26 H 0.160 0.840 27 H 0.157 0.843 28 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.146 -21.015 0.008 21.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.142 4.142 3 Si 0.728 3.272 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.566 4.566 8 H 0.077 0.923 9 C -0.012 4.012 10 C 0.000 4.000 11 O -0.243 6.243 12 C 0.356 3.644 13 O -0.390 6.390 14 C 0.003 3.997 15 C -0.142 4.142 16 C -0.080 4.080 17 C -0.191 4.191 18 C 0.151 3.849 19 F -0.085 7.085 20 N -0.179 5.179 21 H 0.074 0.926 22 H 0.048 0.952 23 H 0.048 0.952 24 H 0.080 0.920 25 H 0.080 0.920 26 H 0.178 0.822 27 H 0.175 0.825 28 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 1.822 -20.007 0.007 20.089 hybrid contribution 0.600 0.256 -0.001 0.652 sum 2.422 -19.751 0.007 19.899 Atomic orbital electron populations 1.69970 1.06093 1.27108 1.49539 1.24989 0.94917 0.99375 0.94879 0.86522 0.79461 0.82490 0.78747 1.20079 1.21124 1.20074 1.20931 0.93114 0.90071 1.52469 0.92270 1.19173 0.94163 0.88770 0.99130 1.23801 0.96578 0.78503 1.01155 1.86725 1.41237 1.15126 1.81166 1.20601 0.85125 0.85023 0.73668 1.90833 1.14239 1.87882 1.46071 1.20034 0.87481 0.92402 0.99795 1.22208 1.02903 0.91189 0.97900 1.21515 0.93304 0.98546 0.94647 1.22139 0.95619 0.98537 1.02777 1.18120 0.79079 0.89450 0.98281 1.91672 1.26924 1.96769 1.93170 1.66994 1.10609 1.28777 1.11549 0.92629 0.95190 0.95199 0.91962 0.91974 0.82202 0.82544 0.82720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.81 13.29 55.43 0.74 -26.08 15 2 C 0.06 1.75 5.46 -17.82 -0.10 1.65 15 3 Si 0.90 21.61 29.54 -169.99 -5.02 16.59 15 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 15 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 15 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 15 7 C -0.53 -15.03 9.11 -34.44 -0.31 -15.35 15 8 H 0.06 1.61 7.74 -52.49 -0.41 1.21 15 9 C 0.02 0.67 5.35 -27.88 -0.15 0.52 15 10 C 0.07 1.64 5.41 37.16 0.20 1.84 15 11 O -0.33 -7.05 10.04 -40.43 -0.41 -7.46 15 12 C 0.51 9.45 7.95 34.76 0.28 9.73 15 13 O -0.50 -9.58 16.11 -19.22 -0.31 -9.89 15 14 C 0.14 2.08 6.75 -83.03 -0.56 1.52 15 15 C -0.12 -1.25 9.63 -39.04 -0.38 -1.63 15 16 C -0.05 -0.38 10.16 -39.33 -0.40 -0.78 15 17 C -0.17 -1.35 10.09 -39.23 -0.40 -1.75 15 18 C 0.31 3.81 8.41 -17.36 -0.15 3.66 15 19 F -0.11 -1.36 17.29 2.25 0.04 -1.32 15 20 N -0.46 -7.34 10.13 -10.15 -0.10 -7.44 15 21 H 0.26 7.48 8.31 -40.82 -0.34 7.14 15 22 H 0.03 0.85 8.14 -51.93 -0.42 0.42 15 23 H 0.03 0.85 8.14 -51.93 -0.42 0.42 15 24 H 0.06 1.37 8.14 -51.93 -0.42 0.95 15 25 H 0.06 1.37 8.14 -51.93 -0.42 0.95 15 26 H 0.16 1.42 7.64 -52.49 -0.40 1.02 15 27 H 0.16 0.47 8.06 -52.49 -0.42 0.04 15 28 H 0.16 0.70 8.06 -52.49 -0.42 0.28 15 LS Contribution 268.39 15.07 4.04 4.04 Total: -1.00 -32.76 268.39 -5.46 -38.21 By element: Atomic # 1 Polarization: -3.60 SS G_CDS: -2.48 Total: -6.07 kcal Atomic # 6 Polarization: 1.37 SS G_CDS: -1.96 Total: -0.59 kcal Atomic # 7 Polarization: -34.15 SS G_CDS: 0.63 Total: -33.52 kcal Atomic # 8 Polarization: -16.63 SS G_CDS: -0.72 Total: -17.35 kcal Atomic # 9 Polarization: -1.36 SS G_CDS: 0.04 Total: -1.32 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -32.76 -5.46 -38.21 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000783208207.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.967 kcal (2) G-P(sol) polarization free energy of solvation -32.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds