Wall clock time and date at job start Sun Mar 29 2020 22:00:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99931 * 2 1 4 4 H 1.48505 * 109.46819 * 239.99713 * 3 2 1 5 5 H 1.48494 * 109.47285 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47196 * 120.00210 * 3 2 1 7 7 C 1.37876 * 119.99769 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99840 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00344 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.46953 * 180.02562 * 9 7 2 11 11 O 1.45206 * 109.46777 * 180.02562 * 10 9 7 12 12 C 1.34675 * 117.00050 * 179.97438 * 11 10 9 13 13 O 1.21440 * 119.99786 * 0.02562 * 12 11 10 14 14 C 1.48054 * 120.00377 * 179.97438 * 12 11 10 15 15 C 1.39263 * 119.71346 * 179.72821 * 14 12 11 16 16 C 1.38666 * 119.11670 * 179.75393 * 15 14 12 17 17 C 1.38500 * 118.52574 * 0.50670 * 16 15 14 18 18 C 1.38918 * 119.33472 * 359.73470 * 17 16 15 19 19 F 1.35100 * 119.58058 * 179.97438 * 18 17 16 20 20 N 1.31684 * 120.83966 * 0.02562 * 18 17 16 21 21 H 0.97000 * 120.00540 * 0.02562 * 1 2 3 22 22 H 1.09000 * 109.46974 * 59.99987 * 9 7 2 23 23 H 1.09001 * 109.46547 * 300.00078 * 9 7 2 24 24 H 1.09000 * 109.47486 * 60.00062 * 10 9 7 25 25 H 1.09001 * 109.47362 * 299.99339 * 10 9 7 26 26 H 1.08001 * 120.44289 * 0.02562 * 15 14 12 27 27 H 1.07994 * 120.73909 * 180.21986 * 16 15 14 28 28 H 1.07992 * 120.33674 * 179.74798 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6621 0.0027 11 8 1.5192 -4.9196 0.0033 12 6 2.2527 -6.0491 0.0036 13 8 3.4654 -5.9855 0.0040 14 6 1.5806 -7.3683 0.0048 15 6 2.3449 -8.5324 -0.0006 16 6 1.7027 -9.7613 0.0057 17 6 0.3179 -9.7839 0.0064 18 6 -0.3824 -8.5841 0.0064 19 9 -1.7333 -8.6003 0.0065 20 7 0.2539 -7.4312 0.0052 21 1 -0.4851 0.8400 -0.0004 22 1 0.6240 -2.5576 -0.8880 23 1 0.6247 -2.5563 0.8920 24 1 2.8719 -3.6036 0.8927 25 1 2.8719 -3.6052 -0.8873 26 1 3.4236 -8.4788 -0.0051 27 1 2.2696 -10.6805 0.0054 28 1 -0.2123 -10.7247 0.0071 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000783208207.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:36 Heat of formation + Delta-G solvation = -116.972326 kcal Electronic energy + Delta-G solvation = -15766.616741 eV Core-core repulsion = 12696.622599 eV Total energy + Delta-G solvation = -3069.994142 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.074 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -50.12302 -41.93818 -40.60429 -37.82365 -35.48968 -34.02397 -32.60541 -32.06068 -27.56861 -26.11998 -24.59251 -23.24102 -22.43375 -19.73714 -19.04789 -18.48236 -17.76077 -17.59520 -17.25000 -17.13357 -17.03581 -16.49279 -15.30098 -14.93425 -14.71118 -14.38496 -14.25257 -14.16771 -13.37691 -13.18068 -13.06579 -12.64426 -12.60665 -12.21745 -11.70551 -11.54200 -11.49059 -11.23547 -10.90421 -10.63206 -10.28924 -8.28154 -6.42863 -0.77270 -0.07027 1.17079 1.37946 1.44676 1.46353 1.54179 2.29644 2.40434 2.45774 3.05809 3.21060 3.59883 3.71043 3.87776 4.14047 4.17520 4.21167 4.56290 4.63737 4.82528 4.87494 5.14686 5.39644 5.41224 5.41519 5.69044 6.01983 6.18036 6.60714 6.71098 7.27186 8.84680 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.043384 B = 0.004499 C = 0.004088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.237362 B = 6222.171659 C = 6846.961546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.003 3.997 3 Si 0.979 3.021 4 H -0.264 1.264 5 H -0.280 1.280 6 H -0.264 1.264 7 C -0.551 4.551 8 H 0.070 0.930 9 C 0.031 3.969 10 C 0.087 3.913 11 O -0.352 6.352 12 C 0.511 3.489 13 O -0.515 6.515 14 C 0.100 3.900 15 C -0.104 4.104 16 C -0.031 4.031 17 C -0.135 4.135 18 C 0.281 3.719 19 F -0.118 7.118 20 N -0.517 5.517 21 H 0.268 0.732 22 H 0.002 0.998 23 H 0.002 0.998 24 H 0.068 0.932 25 H 0.068 0.932 26 H 0.176 0.824 27 H 0.215 0.785 28 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.765 -23.376 0.008 23.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.196 4.196 3 Si 0.802 3.198 4 H -0.188 1.188 5 H -0.205 1.205 6 H -0.188 1.188 7 C -0.588 4.588 8 H 0.088 0.912 9 C -0.007 4.007 10 C 0.014 3.986 11 O -0.267 6.267 12 C 0.355 3.645 13 O -0.404 6.404 14 C -0.035 4.035 15 C -0.124 4.124 16 C -0.056 4.056 17 C -0.156 4.156 18 C 0.124 3.876 19 F -0.097 7.097 20 N -0.235 5.235 21 H 0.077 0.923 22 H 0.020 0.980 23 H 0.020 0.980 24 H 0.086 0.914 25 H 0.086 0.914 26 H 0.193 0.807 27 H 0.232 0.768 28 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 3.459 -22.392 0.008 22.657 hybrid contribution 0.037 0.793 -0.001 0.794 sum 3.496 -21.599 0.007 21.880 Atomic orbital electron populations 1.70116 1.08046 1.28425 1.50266 1.26058 0.95861 1.03717 0.93965 0.85299 0.78096 0.76992 0.79448 1.18837 1.20536 1.18828 1.21348 0.93835 0.90929 1.52715 0.91185 1.18978 0.94383 0.90904 0.96405 1.23319 0.95111 0.78518 1.01613 1.86703 1.42068 1.15707 1.82193 1.21338 0.85259 0.85355 0.72584 1.90795 1.14613 1.88137 1.46903 1.19736 0.87726 0.91483 1.04535 1.22518 1.03466 0.90771 0.95655 1.22179 0.92952 0.98967 0.91499 1.22661 0.96075 0.98204 0.98644 1.18591 0.78899 0.90209 0.99915 1.91642 1.27804 1.96808 1.93483 1.66645 1.11622 1.31739 1.13493 0.92313 0.97953 0.97961 0.91400 0.91413 0.80670 0.76781 0.78199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.69 13.29 21.45 0.28 -57.41 15 2 C 0.00 0.16 5.46 84.65 0.46 0.63 15 3 Si 0.98 44.47 29.54 68.60 2.03 46.50 15 4 H -0.26 -11.43 7.11 99.48 0.71 -10.73 15 5 H -0.28 -12.38 7.11 99.48 0.71 -11.67 15 6 H -0.26 -11.43 7.11 99.48 0.71 -10.72 15 7 C -0.55 -32.16 9.11 25.60 0.23 -31.92 15 8 H 0.07 3.84 7.74 -2.91 -0.02 3.82 15 9 C 0.03 1.74 5.35 29.85 0.16 1.90 15 10 C 0.09 4.15 5.41 71.98 0.39 4.54 15 11 O -0.35 -16.00 10.04 -55.85 -0.56 -16.56 15 12 C 0.51 19.44 7.95 70.43 0.56 20.00 15 13 O -0.52 -19.92 16.11 20.03 0.32 -19.60 15 14 C 0.10 2.98 6.75 41.85 0.28 3.26 15 15 C -0.10 -1.84 9.63 22.62 0.22 -1.63 15 16 C -0.03 -0.27 10.16 22.43 0.23 -0.04 15 17 C -0.14 -1.56 10.09 22.50 0.23 -1.34 15 18 C 0.28 6.68 8.41 84.88 0.71 7.39 15 19 F -0.12 -3.01 17.29 44.97 0.78 -2.23 15 20 N -0.52 -16.82 10.13 -186.02 -1.88 -18.71 15 21 H 0.27 15.50 8.31 -92.71 -0.77 14.73 15 22 H 0.00 0.13 8.14 -2.39 -0.02 0.11 15 23 H 0.00 0.12 8.14 -2.39 -0.02 0.10 15 24 H 0.07 3.10 8.14 -2.39 -0.02 3.08 15 25 H 0.07 3.09 8.14 -2.39 -0.02 3.07 15 26 H 0.18 2.54 7.64 -2.91 -0.02 2.52 15 27 H 0.22 -0.48 8.06 -2.91 -0.02 -0.50 15 28 H 0.20 0.53 8.06 -2.91 -0.02 0.51 15 Total: -1.00 -76.52 268.39 5.62 -70.90 By element: Atomic # 1 Polarization: -6.86 SS G_CDS: 1.18 Total: -5.68 kcal Atomic # 6 Polarization: -0.68 SS G_CDS: 3.47 Total: 2.79 kcal Atomic # 7 Polarization: -74.52 SS G_CDS: -1.60 Total: -76.12 kcal Atomic # 8 Polarization: -35.92 SS G_CDS: -0.24 Total: -36.16 kcal Atomic # 9 Polarization: -3.01 SS G_CDS: 0.78 Total: -2.23 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Total: -76.52 5.62 -70.90 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000783208207.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.073 kcal (2) G-P(sol) polarization free energy of solvation -76.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds