Wall clock time and date at job start Sun Mar 29 2020 22:00:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86795 * 120.00365 * 2 1 4 4 H 1.48493 * 109.47245 * 270.00266 * 3 2 1 5 5 H 1.48502 * 109.46953 * 30.00118 * 3 2 1 6 6 H 1.48505 * 109.47250 * 149.99897 * 3 2 1 7 7 C 1.37882 * 119.99410 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00450 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99518 * 180.02562 * 7 2 1 10 10 C 1.53003 * 109.47021 * 179.97438 * 9 7 2 11 11 O 1.45202 * 109.47389 * 179.97438 * 10 9 7 12 12 C 1.34722 * 116.99810 * 180.02562 * 11 10 9 13 13 O 1.21487 * 120.00405 * 359.97438 * 12 11 10 14 14 C 1.47604 * 119.99638 * 179.97438 * 12 11 10 15 15 C 1.40203 * 120.53498 * 179.97438 * 14 12 11 16 16 C 1.38135 * 118.32069 * 179.97438 * 15 14 12 17 17 C 1.38768 * 119.28728 * 0.02562 * 16 15 14 18 18 F 1.35099 * 119.48606 * 180.02562 * 17 16 15 19 19 N 1.32158 * 121.02922 * 0.02562 * 17 16 15 20 20 C 1.31675 * 121.84220 * 359.97438 * 19 17 16 21 21 H 0.97007 * 119.99896 * 359.97438 * 1 2 3 22 22 H 1.08993 * 109.47721 * 59.99411 * 9 7 2 23 23 H 1.09003 * 109.46766 * 299.99511 * 9 7 2 24 24 H 1.09001 * 109.47095 * 59.99535 * 10 9 7 25 25 H 1.08994 * 109.47222 * 299.99744 * 10 9 7 26 26 H 1.08003 * 120.84398 * 359.96102 * 15 14 12 27 27 H 1.07997 * 120.36074 * 179.72993 * 16 15 14 28 28 H 1.08004 * 119.70213 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7001 7 6 2.0044 -1.1942 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1942 0.0000 10 6 4.0214 -2.6367 -0.0001 11 8 5.4734 -2.6369 -0.0001 12 6 6.0849 -3.8373 -0.0008 13 8 5.4232 -4.8562 -0.0008 14 6 7.5589 -3.9146 -0.0014 15 6 8.2070 -5.1579 -0.0016 16 6 9.5882 -5.1769 -0.0027 17 6 10.2836 -3.9761 -0.0032 18 9 11.6345 -3.9900 -0.0049 19 7 9.6450 -2.8190 -0.0020 20 6 8.3300 -2.7513 -0.0009 21 1 -0.4850 0.8401 0.0004 22 1 3.8745 -0.6809 0.8904 23 1 3.8751 -0.6798 -0.8895 24 1 3.6583 -3.1504 -0.8903 25 1 3.6577 -3.1507 0.8896 26 1 7.6407 -6.0775 -0.0006 27 1 10.1212 -6.1162 0.0015 28 1 7.8438 -1.7869 -0.0004 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000785632055.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:31 Heat of formation + Delta-G solvation = -97.302534 kcal Electronic energy + Delta-G solvation = -15725.069780 eV Core-core repulsion = 12655.928584 eV Total energy + Delta-G solvation = -3069.141196 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.074 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -49.45400 -40.83262 -39.50496 -36.38887 -33.39998 -33.15466 -31.79783 -30.64287 -25.90212 -24.56289 -24.15440 -21.36434 -20.71725 -18.58937 -18.20030 -17.42665 -16.95924 -16.54281 -16.13060 -16.06065 -15.04433 -14.36870 -14.25840 -13.88893 -13.75300 -13.45832 -13.19222 -13.03427 -12.52315 -11.63669 -11.39151 -10.89229 -10.76906 -10.52871 -10.26145 -10.04270 -9.96713 -9.80938 -9.47485 -9.40460 -8.66478 -6.16944 -4.18776 0.05588 0.65034 2.37931 2.76751 3.09292 3.25349 3.31323 3.33226 3.36479 4.04446 4.30856 4.34898 4.38128 4.72120 4.89816 5.16554 5.25177 5.38941 5.61089 5.84398 5.87803 6.07264 6.35702 6.58481 7.07193 7.13094 7.14718 7.56590 7.87697 8.34588 8.84296 9.42182 10.95445 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.044676 B = 0.004527 C = 0.004123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.579789 B = 6183.827228 C = 6789.961766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.072 3.928 3 Si 0.882 3.118 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.263 1.263 7 C -0.529 4.529 8 H 0.076 0.924 9 C -0.010 4.010 10 C 0.084 3.916 11 O -0.355 6.355 12 C 0.510 3.490 13 O -0.505 6.505 14 C -0.183 4.183 15 C 0.014 3.986 16 C -0.205 4.205 17 C 0.333 3.667 18 F -0.107 7.107 19 N -0.520 5.520 20 C 0.199 3.801 21 H 0.266 0.734 22 H 0.029 0.971 23 H 0.025 0.975 24 H 0.068 0.932 25 H 0.068 0.932 26 H 0.161 0.839 27 H 0.158 0.842 28 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.376 -8.345 0.025 21.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.130 4.130 3 Si 0.708 3.292 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.187 1.187 7 C -0.567 4.567 8 H 0.094 0.906 9 C -0.047 4.047 10 C 0.012 3.988 11 O -0.271 6.271 12 C 0.353 3.647 13 O -0.394 6.394 14 C -0.186 4.186 15 C -0.012 4.012 16 C -0.226 4.226 17 C 0.180 3.820 18 F -0.086 7.086 19 N -0.234 5.234 20 C 0.041 3.959 21 H 0.076 0.924 22 H 0.048 0.952 23 H 0.043 0.957 24 H 0.086 0.914 25 H 0.087 0.913 26 H 0.179 0.821 27 H 0.175 0.825 28 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 19.518 -7.748 0.029 20.999 hybrid contribution 0.020 0.054 -0.021 0.061 sum 19.537 -7.694 0.008 20.998 Atomic orbital electron populations 1.69893 1.06298 1.27272 1.49877 1.24942 0.94781 0.99222 0.94071 0.86746 0.80428 0.83234 0.78766 1.20037 1.21163 1.18705 1.20816 0.88172 0.95072 1.52655 0.90616 1.19646 0.97092 0.89945 0.98033 1.23494 0.71321 1.01912 1.02121 1.86517 1.26957 1.30876 1.82741 1.20585 0.87863 0.82710 0.73563 1.90841 1.66587 1.36307 1.45708 1.20365 0.92268 0.95591 1.10423 1.21662 0.93120 0.98181 0.88194 1.21793 0.94784 0.98683 1.07341 1.18519 0.78730 0.90235 0.94489 1.91654 1.27361 1.96915 1.92659 1.67162 1.11676 1.27907 1.16683 1.23130 0.86324 0.99243 0.87199 0.92382 0.95249 0.95670 0.91374 0.91341 0.82107 0.82469 0.79536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.85 13.96 55.43 0.77 -26.08 15 2 C 0.07 2.05 5.47 -17.82 -0.10 1.95 15 3 Si 0.88 20.92 27.47 -169.99 -4.67 16.25 15 4 H -0.27 -6.40 7.11 56.52 0.40 -6.00 15 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 15 6 H -0.26 -5.95 6.54 56.52 0.37 -5.58 15 7 C -0.53 -14.61 9.66 -34.44 -0.33 -14.94 15 8 H 0.08 2.24 7.99 -52.49 -0.42 1.82 15 9 C -0.01 -0.22 4.42 -27.88 -0.12 -0.35 15 10 C 0.08 1.68 5.41 37.16 0.20 1.88 15 11 O -0.35 -6.11 9.49 -40.55 -0.38 -6.49 15 12 C 0.51 7.90 7.90 34.55 0.27 8.17 15 13 O -0.50 -8.96 16.21 -19.26 -0.31 -9.27 15 14 C -0.18 -2.19 5.89 -104.84 -0.62 -2.81 15 15 C 0.01 0.13 9.71 -38.88 -0.38 -0.25 15 16 C -0.20 -1.66 10.07 -39.42 -0.40 -2.06 15 17 C 0.33 3.46 8.41 -17.22 -0.14 3.32 15 18 F -0.11 -1.10 17.29 2.25 0.04 -1.06 15 19 N -0.52 -6.24 10.36 -13.20 -0.14 -6.38 15 20 C 0.20 2.27 10.79 -17.12 -0.18 2.09 15 21 H 0.27 7.44 8.31 -40.82 -0.34 7.10 15 22 H 0.03 0.67 7.20 -51.93 -0.37 0.30 15 23 H 0.02 0.56 7.57 -51.93 -0.39 0.17 15 24 H 0.07 1.37 8.14 -51.93 -0.42 0.95 15 25 H 0.07 1.38 8.14 -51.93 -0.42 0.95 15 26 H 0.16 1.31 7.73 -52.48 -0.41 0.90 15 27 H 0.16 0.78 8.06 -52.49 -0.42 0.36 15 28 H 0.19 1.94 7.62 -52.48 -0.40 1.54 15 LS Contribution 264.00 15.07 3.98 3.98 Total: -1.00 -30.93 264.00 -4.94 -35.87 By element: Atomic # 1 Polarization: -1.40 SS G_CDS: -2.43 Total: -3.82 kcal Atomic # 6 Polarization: -1.20 SS G_CDS: -1.80 Total: -3.00 kcal Atomic # 7 Polarization: -33.09 SS G_CDS: 0.64 Total: -32.45 kcal Atomic # 8 Polarization: -15.07 SS G_CDS: -0.70 Total: -15.76 kcal Atomic # 9 Polarization: -1.10 SS G_CDS: 0.04 Total: -1.06 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -4.67 Total: 16.25 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -30.93 -4.94 -35.87 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000785632055.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.430 kcal (2) G-P(sol) polarization free energy of solvation -30.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds