Wall clock time and date at job start Sun Mar 29 2020 22:00:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86795 * 120.00365 * 2 1 4 4 H 1.48493 * 109.47245 * 270.00266 * 3 2 1 5 5 H 1.48502 * 109.46953 * 30.00118 * 3 2 1 6 6 H 1.48505 * 109.47250 * 149.99897 * 3 2 1 7 7 C 1.37882 * 119.99410 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00450 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99518 * 180.02562 * 7 2 1 10 10 C 1.53003 * 109.47021 * 179.97438 * 9 7 2 11 11 O 1.45202 * 109.47389 * 179.97438 * 10 9 7 12 12 C 1.34722 * 116.99810 * 180.02562 * 11 10 9 13 13 O 1.21487 * 120.00405 * 359.97438 * 12 11 10 14 14 C 1.47604 * 119.99638 * 179.97438 * 12 11 10 15 15 C 1.40203 * 120.53498 * 179.97438 * 14 12 11 16 16 C 1.38135 * 118.32069 * 179.97438 * 15 14 12 17 17 C 1.38768 * 119.28728 * 0.02562 * 16 15 14 18 18 F 1.35099 * 119.48606 * 180.02562 * 17 16 15 19 19 N 1.32158 * 121.02922 * 0.02562 * 17 16 15 20 20 C 1.31675 * 121.84220 * 359.97438 * 19 17 16 21 21 H 0.97007 * 119.99896 * 359.97438 * 1 2 3 22 22 H 1.08993 * 109.47721 * 59.99411 * 9 7 2 23 23 H 1.09003 * 109.46766 * 299.99511 * 9 7 2 24 24 H 1.09001 * 109.47095 * 59.99535 * 10 9 7 25 25 H 1.08994 * 109.47222 * 299.99744 * 10 9 7 26 26 H 1.08003 * 120.84398 * 359.96102 * 15 14 12 27 27 H 1.07997 * 120.36074 * 179.72993 * 16 15 14 28 28 H 1.08004 * 119.70213 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7001 7 6 2.0044 -1.1942 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1942 0.0000 10 6 4.0214 -2.6367 -0.0001 11 8 5.4734 -2.6369 -0.0001 12 6 6.0849 -3.8373 -0.0008 13 8 5.4232 -4.8562 -0.0008 14 6 7.5589 -3.9146 -0.0014 15 6 8.2070 -5.1579 -0.0016 16 6 9.5882 -5.1769 -0.0027 17 6 10.2836 -3.9761 -0.0032 18 9 11.6345 -3.9900 -0.0049 19 7 9.6450 -2.8190 -0.0020 20 6 8.3300 -2.7513 -0.0009 21 1 -0.4850 0.8401 0.0004 22 1 3.8745 -0.6809 0.8904 23 1 3.8751 -0.6798 -0.8895 24 1 3.6583 -3.1504 -0.8903 25 1 3.6577 -3.1507 0.8896 26 1 7.6407 -6.0775 -0.0006 27 1 10.1212 -6.1162 0.0015 28 1 7.8438 -1.7869 -0.0004 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000785632055.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:31 Heat of formation + Delta-G solvation = -116.858807 kcal Electronic energy + Delta-G solvation = -15725.917804 eV Core-core repulsion = 12655.928584 eV Total energy + Delta-G solvation = -3069.989219 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.074 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -50.24437 -41.89024 -40.61318 -37.78722 -35.39214 -33.99631 -33.06237 -32.19824 -27.51454 -25.72160 -25.06121 -22.81003 -22.27953 -19.62642 -19.24959 -18.76174 -18.37703 -17.65842 -17.44774 -17.22021 -16.30581 -15.79181 -15.30393 -15.29152 -14.87162 -14.50361 -14.30459 -14.23898 -14.02300 -13.31846 -13.16668 -12.51969 -12.48697 -11.82392 -11.75723 -11.52522 -11.45119 -11.31852 -10.92471 -10.79634 -10.31349 -8.32875 -6.40890 -0.83343 -0.09909 1.26793 1.40443 1.41867 1.50931 1.54504 2.29413 2.35820 2.41963 3.02435 3.23618 3.44419 3.59160 3.74902 4.07558 4.19565 4.19840 4.52109 4.61514 4.66343 4.80204 5.04715 5.30712 5.31496 5.44039 5.53243 6.16850 6.29600 6.56714 6.65812 7.24155 8.82981 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.044676 B = 0.004527 C = 0.004123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.579789 B = 6183.827228 C = 6789.961766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.011 3.989 3 Si 0.953 3.047 4 H -0.264 1.264 5 H -0.284 1.284 6 H -0.241 1.241 7 C -0.541 4.541 8 H 0.036 0.964 9 C -0.005 4.005 10 C 0.095 3.905 11 O -0.352 6.352 12 C 0.513 3.487 13 O -0.531 6.531 14 C -0.196 4.196 15 C 0.021 3.979 16 C -0.182 4.182 17 C 0.327 3.673 18 F -0.107 7.107 19 N -0.543 5.543 20 C 0.201 3.799 21 H 0.270 0.730 22 H 0.038 0.962 23 H 0.037 0.963 24 H 0.062 0.938 25 H 0.062 0.938 26 H 0.177 0.823 27 H 0.197 0.803 28 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.059 -8.311 0.020 23.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.187 4.187 3 Si 0.776 3.224 4 H -0.189 1.189 5 H -0.209 1.209 6 H -0.164 1.164 7 C -0.579 4.579 8 H 0.055 0.945 9 C -0.043 4.043 10 C 0.022 3.978 11 O -0.269 6.269 12 C 0.358 3.642 13 O -0.422 6.422 14 C -0.199 4.199 15 C -0.004 4.004 16 C -0.202 4.202 17 C 0.175 3.825 18 F -0.086 7.086 19 N -0.258 5.258 20 C 0.043 3.957 21 H 0.079 0.921 22 H 0.056 0.944 23 H 0.055 0.945 24 H 0.080 0.920 25 H 0.080 0.920 26 H 0.194 0.806 27 H 0.214 0.786 28 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 22.233 -7.734 0.024 23.540 hybrid contribution -0.759 -0.088 -0.021 0.764 sum 21.474 -7.822 0.003 22.855 Atomic orbital electron populations 1.70045 1.08355 1.28557 1.51464 1.25957 0.95656 1.03601 0.93534 0.85615 0.79651 0.77697 0.79477 1.18908 1.20928 1.16407 1.21121 0.90796 0.93761 1.52240 0.94535 1.19485 0.94053 0.91999 0.98725 1.23032 0.73235 0.99949 1.01601 1.86488 1.25008 1.32149 1.83212 1.21122 0.89132 0.81597 0.72330 1.90832 1.67435 1.36811 1.47113 1.20193 0.89768 0.97099 1.12859 1.21891 0.93751 0.97707 0.87010 1.22080 0.93962 0.99327 1.04840 1.18806 0.78813 0.90673 0.94222 1.91660 1.27404 1.96920 1.92594 1.67128 1.11791 1.29193 1.17688 1.23140 0.86202 0.99350 0.87000 0.92138 0.94406 0.94513 0.91984 0.91984 0.80587 0.78631 0.79072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.95 13.96 21.45 0.30 -57.65 15 2 C 0.01 0.60 5.47 84.66 0.46 1.06 15 3 Si 0.95 42.47 27.47 68.60 1.88 44.35 15 4 H -0.26 -11.28 7.11 99.48 0.71 -10.57 15 5 H -0.28 -12.45 7.11 99.48 0.71 -11.75 15 6 H -0.24 -9.82 6.54 99.48 0.65 -9.16 15 7 C -0.54 -30.45 9.66 25.60 0.25 -30.20 15 8 H 0.04 2.26 7.99 -2.91 -0.02 2.24 15 9 C -0.01 -0.23 4.42 29.85 0.13 -0.10 15 10 C 0.09 3.79 5.41 71.98 0.39 4.18 15 11 O -0.35 -11.79 9.49 -56.32 -0.53 -12.32 15 12 C 0.51 15.38 7.90 70.29 0.56 15.93 15 13 O -0.53 -18.50 16.21 19.88 0.32 -18.18 15 14 C -0.20 -4.33 5.89 -20.01 -0.12 -4.45 15 15 C 0.02 0.34 9.71 22.72 0.22 0.56 15 16 C -0.18 -2.27 10.07 22.37 0.23 -2.05 15 17 C 0.33 5.92 8.41 84.77 0.71 6.63 15 18 F -0.11 -1.93 17.29 44.97 0.78 -1.15 15 19 N -0.54 -12.01 10.36 -195.67 -2.03 -14.03 15 20 C 0.20 4.26 10.79 85.04 0.92 5.18 15 21 H 0.27 15.36 8.31 -92.70 -0.77 14.58 15 22 H 0.04 1.65 7.20 -2.39 -0.02 1.63 15 23 H 0.04 1.58 7.57 -2.39 -0.02 1.56 15 24 H 0.06 2.53 8.14 -2.39 -0.02 2.51 15 25 H 0.06 2.53 8.14 -2.39 -0.02 2.51 15 26 H 0.18 2.32 7.73 -2.91 -0.02 2.29 15 27 H 0.20 0.94 8.06 -2.91 -0.02 0.92 15 28 H 0.19 3.71 7.62 -2.91 -0.02 3.68 15 Total: -1.00 -67.38 264.00 5.60 -61.78 By element: Atomic # 1 Polarization: -0.68 SS G_CDS: 1.13 Total: 0.45 kcal Atomic # 6 Polarization: -6.99 SS G_CDS: 3.75 Total: -3.24 kcal Atomic # 7 Polarization: -69.96 SS G_CDS: -1.73 Total: -71.68 kcal Atomic # 8 Polarization: -30.29 SS G_CDS: -0.21 Total: -30.50 kcal Atomic # 9 Polarization: -1.93 SS G_CDS: 0.78 Total: -1.15 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 1.88 Total: 44.35 kcal Total: -67.38 5.60 -61.78 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000785632055.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.078 kcal (2) G-P(sol) polarization free energy of solvation -67.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds