Wall clock time and date at job start Sun Mar 29 2020 22:17:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.46647 * 2 1 4 4 C 1.52999 * 109.46894 * 239.99972 * 2 1 3 5 5 C 1.50703 * 109.46729 * 175.00243 * 4 2 1 6 6 H 1.08006 * 120.00280 * 359.97438 * 5 4 2 7 7 C 1.37875 * 120.00053 * 180.02562 * 5 4 2 8 8 N 1.31519 * 119.99893 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00239 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46736 * 59.99831 * 9 7 5 11 11 H 1.48498 * 109.47440 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47200 * 300.00026 * 9 7 5 13 13 S 1.81401 * 109.46970 * 120.00047 * 2 1 3 14 14 C 1.76201 * 102.99767 * 293.33304 * 13 2 1 15 15 C 1.39084 * 119.70577 * 124.64666 * 14 13 2 16 16 C 1.38363 * 119.11014 * 179.76960 * 15 14 13 17 17 C 1.38833 * 118.51840 * 0.47679 * 16 15 14 18 18 C 1.38103 * 119.33768 * 359.76737 * 17 16 15 19 19 N 1.31999 * 120.84412 * 0.02562 * 18 17 16 20 20 O 1.41593 * 119.19658 * 179.97438 * 19 18 17 21 21 H 1.09002 * 109.47003 * 64.99441 * 1 2 3 22 22 H 1.09007 * 109.47024 * 184.98771 * 1 2 3 23 23 H 1.08997 * 109.47183 * 304.99026 * 1 2 3 24 24 H 1.09002 * 109.47443 * 294.99553 * 4 2 1 25 25 H 1.08999 * 109.47316 * 55.00157 * 4 2 1 26 26 H 0.96999 * 120.00236 * 180.02562 * 8 7 5 27 27 H 1.08001 * 120.44487 * 0.02562 * 15 14 13 28 28 H 1.07997 * 120.73783 * 180.26961 * 16 15 14 29 29 H 1.08008 * 120.32876 * 179.78840 * 17 16 15 30 30 H 1.08000 * 119.57533 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 3.5419 -0.6149 -1.3127 6 1 4.0790 -0.0855 -0.5395 7 6 4.2304 -1.1926 -2.3582 8 7 3.5764 -1.8369 -3.3000 9 14 6.0920 -1.0603 -2.4373 10 1 6.6845 -1.6864 -1.2280 11 1 6.5871 -1.7604 -3.6497 12 1 6.4844 0.3707 -2.4965 13 16 2.1346 -0.8552 1.4811 14 6 1.6256 0.2099 2.7892 15 6 0.8468 -0.2945 3.8253 16 6 0.4581 0.5516 4.8487 17 6 0.8543 1.8812 4.7961 18 6 1.6232 2.3166 3.7348 19 7 1.9831 1.4859 2.7741 20 8 2.7713 1.9698 1.7019 21 1 -0.3633 0.4344 -0.9314 22 1 -0.3633 -1.0238 0.0894 23 1 -0.3633 0.5893 0.8419 24 1 1.7517 -1.7716 -1.2056 25 1 1.6054 -0.2618 -2.1370 26 1 4.0607 -2.2437 -4.0354 27 1 0.5530 -1.3338 3.8331 28 1 -0.1431 0.1867 5.6684 29 1 0.5644 2.5680 5.5776 30 1 1.9339 3.3500 3.6902 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787488669.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:02 Heat of formation + Delta-G solvation = 52.156094 kcal Electronic energy + Delta-G solvation = -14660.527207 eV Core-core repulsion = 12164.080200 eV Total energy + Delta-G solvation = -2496.447007 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.91796 -34.66382 -34.29447 -32.03732 -31.70260 -29.52798 -27.41669 -24.41370 -23.96772 -23.20475 -20.47373 -18.36898 -17.17029 -16.52109 -16.19453 -15.38978 -15.13621 -14.77946 -14.50584 -14.28874 -13.06559 -12.70460 -12.40626 -12.00814 -11.77131 -11.53738 -11.20418 -10.94185 -10.69190 -10.49394 -10.44231 -10.18400 -9.41193 -9.21156 -9.07493 -8.80318 -8.31051 -8.16853 -7.08133 -5.91653 -3.91234 0.46287 0.67531 1.88038 2.66770 3.02383 3.38163 3.45998 3.46953 3.54252 4.41422 4.51617 4.58010 4.59817 4.68637 5.21471 5.45776 5.55532 5.70915 5.74246 5.78568 5.84102 6.04168 6.48657 6.64646 6.81016 6.87883 7.26438 7.59501 7.68018 8.08900 8.45744 9.16191 9.72303 11.19840 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.037341 B = 0.006870 C = 0.006412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.666448 B = 4074.524676 C = 4366.018858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.072 4.072 3 H 0.114 0.886 4 C 0.041 3.959 5 C -0.513 4.513 6 H 0.068 0.932 7 C 0.057 3.943 8 N -0.900 5.900 9 Si 0.893 3.107 10 H -0.276 1.276 11 H -0.289 1.289 12 H -0.276 1.276 13 S -0.023 6.023 14 C 0.065 3.935 15 C -0.099 4.099 16 C -0.083 4.083 17 C -0.134 4.134 18 C 0.071 3.929 19 N -0.117 5.117 20 O -0.517 6.517 21 H 0.065 0.935 22 H 0.061 0.939 23 H 0.033 0.967 24 H 0.024 0.976 25 H 0.037 0.963 26 H 0.260 0.740 27 H 0.164 0.836 28 H 0.151 0.849 29 H 0.158 0.842 30 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.879 3.716 17.818 20.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.201 4.201 3 H 0.132 0.868 4 C 0.003 3.997 5 C -0.551 4.551 6 H 0.086 0.914 7 C -0.143 4.143 8 N -0.540 5.540 9 Si 0.721 3.279 10 H -0.201 1.201 11 H -0.215 1.215 12 H -0.202 1.202 13 S 0.217 5.783 14 C -0.171 4.171 15 C -0.123 4.123 16 C -0.110 4.110 17 C -0.156 4.156 18 C -0.077 4.077 19 N 0.202 4.798 20 O -0.574 6.574 21 H 0.084 0.916 22 H 0.080 0.920 23 H 0.052 0.948 24 H 0.042 0.958 25 H 0.055 0.945 26 H 0.070 0.930 27 H 0.181 0.819 28 H 0.168 0.832 29 H 0.175 0.825 30 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -8.984 2.696 17.269 19.652 hybrid contribution 0.533 1.445 -0.206 1.554 sum -8.451 4.140 17.063 19.486 Atomic orbital electron populations 1.22099 0.95148 1.01590 1.00990 1.24015 0.95737 1.05325 0.94975 0.86826 1.19025 0.96770 0.95202 0.88723 1.21324 0.91494 1.33953 1.08373 0.91389 1.24978 0.98483 0.95283 0.95574 1.69955 1.35613 1.36293 1.12168 0.86622 0.85758 0.78353 0.77162 1.20128 1.21470 1.20159 1.85765 1.73761 1.23235 0.95552 1.24256 1.00135 0.88764 1.03932 1.21895 0.95390 1.02225 0.92775 1.21724 0.97966 0.93165 0.98121 1.21716 0.98400 0.97159 0.98284 1.22631 0.97650 0.98748 0.88712 1.43976 1.18042 1.04534 1.13273 1.97669 1.52432 1.82136 1.25164 0.91623 0.92012 0.94763 0.95811 0.94492 0.93049 0.81851 0.83176 0.82480 0.80593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 9.06 37.16 0.34 -2.20 16 2 C -0.07 -1.65 2.50 -26.73 -0.07 -1.71 16 3 H 0.11 2.93 5.96 -51.93 -0.31 2.62 16 4 C 0.04 1.11 4.45 -27.88 -0.12 0.99 16 5 C -0.51 -15.35 8.53 -34.44 -0.29 -15.64 16 6 H 0.07 2.11 7.60 -52.48 -0.40 1.71 16 7 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 8 N -0.90 -27.74 13.29 55.43 0.74 -27.00 16 9 Si 0.89 23.21 29.54 -169.99 -5.02 18.19 16 10 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 11 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 12 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 13 S -0.02 -0.49 19.90 -107.50 -2.14 -2.63 16 14 C 0.07 1.10 6.14 -16.94 -0.10 0.99 16 15 C -0.10 -1.11 9.84 -39.22 -0.39 -1.49 16 16 C -0.08 -0.64 10.17 -39.32 -0.40 -1.04 16 17 C -0.13 -1.06 10.10 -39.41 -0.40 -1.46 16 18 C 0.07 0.89 10.69 -17.53 -0.19 0.70 16 19 N -0.12 -2.13 3.60 -12.10 -0.04 -2.18 16 20 O -0.52 -13.03 16.96 -11.47 -0.19 -13.22 16 21 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 22 H 0.06 1.04 8.14 -51.92 -0.42 0.61 16 23 H 0.03 0.56 7.84 -51.93 -0.41 0.16 16 24 H 0.02 0.66 8.14 -51.93 -0.42 0.23 16 25 H 0.04 1.04 8.14 -51.93 -0.42 0.62 16 26 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 27 H 0.16 1.42 8.06 -52.49 -0.42 1.00 16 28 H 0.15 0.56 8.06 -52.49 -0.42 0.14 16 29 H 0.16 0.59 8.06 -52.48 -0.42 0.17 16 30 H 0.18 1.85 8.06 -52.49 -0.42 1.42 16 LS Contribution 276.04 15.07 4.16 4.16 Total: -1.00 -37.74 276.04 -7.86 -45.60 By element: Atomic # 1 Polarization: -0.04 SS G_CDS: -3.63 Total: -3.67 kcal Atomic # 6 Polarization: -17.53 SS G_CDS: -1.72 Total: -19.25 kcal Atomic # 7 Polarization: -29.87 SS G_CDS: 0.69 Total: -29.18 kcal Atomic # 8 Polarization: -13.03 SS G_CDS: -0.19 Total: -13.22 kcal Atomic # 14 Polarization: 23.21 SS G_CDS: -5.02 Total: 18.19 kcal Atomic # 16 Polarization: -0.49 SS G_CDS: -2.14 Total: -2.63 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -37.74 -7.86 -45.60 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787488669.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.755 kcal (2) G-P(sol) polarization free energy of solvation -37.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.599 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds