Wall clock time and date at job start Sun Mar 29 2020 22:17:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.46647 * 2 1 4 4 C 1.52999 * 109.46894 * 239.99972 * 2 1 3 5 5 C 1.50703 * 109.46729 * 175.00243 * 4 2 1 6 6 H 1.08006 * 120.00280 * 359.97438 * 5 4 2 7 7 C 1.37875 * 120.00053 * 180.02562 * 5 4 2 8 8 N 1.31519 * 119.99893 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00239 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46736 * 59.99831 * 9 7 5 11 11 H 1.48498 * 109.47440 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47200 * 300.00026 * 9 7 5 13 13 S 1.81401 * 109.46970 * 120.00047 * 2 1 3 14 14 C 1.76201 * 102.99767 * 293.33304 * 13 2 1 15 15 C 1.39084 * 119.70577 * 124.64666 * 14 13 2 16 16 C 1.38363 * 119.11014 * 179.76960 * 15 14 13 17 17 C 1.38833 * 118.51840 * 0.47679 * 16 15 14 18 18 C 1.38103 * 119.33768 * 359.76737 * 17 16 15 19 19 N 1.31999 * 120.84412 * 0.02562 * 18 17 16 20 20 O 1.41593 * 119.19658 * 179.97438 * 19 18 17 21 21 H 1.09002 * 109.47003 * 64.99441 * 1 2 3 22 22 H 1.09007 * 109.47024 * 184.98771 * 1 2 3 23 23 H 1.08997 * 109.47183 * 304.99026 * 1 2 3 24 24 H 1.09002 * 109.47443 * 294.99553 * 4 2 1 25 25 H 1.08999 * 109.47316 * 55.00157 * 4 2 1 26 26 H 0.96999 * 120.00236 * 180.02562 * 8 7 5 27 27 H 1.08001 * 120.44487 * 0.02562 * 15 14 13 28 28 H 1.07997 * 120.73783 * 180.26961 * 16 15 14 29 29 H 1.08008 * 120.32876 * 179.78840 * 17 16 15 30 30 H 1.08000 * 119.57533 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 3.5419 -0.6149 -1.3127 6 1 4.0790 -0.0855 -0.5395 7 6 4.2304 -1.1926 -2.3582 8 7 3.5764 -1.8369 -3.3000 9 14 6.0920 -1.0603 -2.4373 10 1 6.6845 -1.6864 -1.2280 11 1 6.5871 -1.7604 -3.6497 12 1 6.4844 0.3707 -2.4965 13 16 2.1346 -0.8552 1.4811 14 6 1.6256 0.2099 2.7892 15 6 0.8468 -0.2945 3.8253 16 6 0.4581 0.5516 4.8487 17 6 0.8543 1.8812 4.7961 18 6 1.6232 2.3166 3.7348 19 7 1.9831 1.4859 2.7741 20 8 2.7713 1.9698 1.7019 21 1 -0.3633 0.4344 -0.9314 22 1 -0.3633 -1.0238 0.0894 23 1 -0.3633 0.5893 0.8419 24 1 1.7517 -1.7716 -1.2056 25 1 1.6054 -0.2618 -2.1370 26 1 4.0607 -2.2437 -4.0354 27 1 0.5530 -1.3338 3.8331 28 1 -0.1431 0.1867 5.6684 29 1 0.5644 2.5680 5.5776 30 1 1.9339 3.3500 3.6902 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787488669.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:02 Heat of formation + Delta-G solvation = 25.272937 kcal Electronic energy + Delta-G solvation = -14661.692948 eV Core-core repulsion = 12164.080200 eV Total energy + Delta-G solvation = -2497.612748 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.97426 -36.48678 -35.49072 -34.09320 -32.76554 -30.91048 -29.45226 -25.39718 -25.33931 -24.91240 -22.31536 -19.49821 -18.56411 -18.22691 -17.44668 -16.77753 -16.61683 -16.35597 -15.67699 -15.59687 -14.84580 -14.33408 -13.78994 -13.63086 -13.37241 -12.86392 -12.78307 -12.57914 -12.43155 -12.32361 -12.07983 -11.59608 -11.47017 -11.22192 -10.69123 -10.48767 -10.43037 -9.78779 -8.63958 -8.23823 -6.30951 -0.51818 -0.21876 0.52322 1.32618 1.36764 1.41184 1.45617 1.73922 2.26690 2.38623 3.09434 3.57581 3.71977 3.75418 4.00226 4.09310 4.15264 4.43398 4.50246 4.84045 4.88549 4.91064 4.93813 5.05441 5.13344 5.31571 5.50463 5.74498 5.83274 5.87618 6.18838 6.79636 7.35739 8.87775 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.037341 B = 0.006870 C = 0.006412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.666448 B = 4074.524676 C = 4366.018858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.064 4.064 3 H 0.074 0.926 4 C 0.050 3.950 5 C -0.531 4.531 6 H 0.046 0.954 7 C 0.008 3.992 8 N -0.928 5.928 9 Si 0.956 3.044 10 H -0.270 1.270 11 H -0.270 1.270 12 H -0.277 1.277 13 S -0.075 6.075 14 C 0.042 3.958 15 C -0.087 4.087 16 C -0.045 4.045 17 C -0.095 4.095 18 C 0.056 3.944 19 N -0.147 5.147 20 O -0.611 6.611 21 H 0.065 0.935 22 H 0.078 0.922 23 H 0.052 0.948 24 H 0.010 0.990 25 H 0.012 0.988 26 H 0.266 0.734 27 H 0.191 0.809 28 H 0.215 0.785 29 H 0.219 0.781 30 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.798 3.761 22.112 25.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.193 4.193 3 H 0.092 0.908 4 C 0.012 3.988 5 C -0.569 4.569 6 H 0.064 0.936 7 C -0.190 4.190 8 N -0.568 5.568 9 Si 0.780 3.220 10 H -0.195 1.195 11 H -0.195 1.195 12 H -0.203 1.203 13 S 0.163 5.837 14 C -0.194 4.194 15 C -0.111 4.111 16 C -0.071 4.071 17 C -0.115 4.115 18 C -0.092 4.092 19 N 0.169 4.831 20 O -0.664 6.664 21 H 0.084 0.916 22 H 0.097 0.903 23 H 0.071 0.929 24 H 0.028 0.972 25 H 0.030 0.970 26 H 0.074 0.926 27 H 0.209 0.791 28 H 0.232 0.768 29 H 0.235 0.765 30 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -10.891 2.763 21.539 24.293 hybrid contribution 0.937 1.507 -1.136 2.107 sum -9.954 4.270 20.402 23.099 Atomic orbital electron populations 1.21970 0.91666 1.03002 1.01798 1.23605 0.98570 1.02362 0.94775 0.90767 1.18795 0.95285 0.94474 0.90284 1.21482 0.93229 1.34036 1.08170 0.93609 1.25781 1.03283 0.94800 0.95086 1.70043 1.37406 1.36753 1.12598 0.85647 0.80091 0.78304 0.77913 1.19535 1.19490 1.20283 1.85440 1.76848 1.24459 0.96910 1.24122 1.03019 0.88140 1.04140 1.22397 0.93186 1.04163 0.91357 1.22532 0.95279 0.91981 0.97353 1.22524 0.94021 0.98371 0.96578 1.23367 0.98010 0.99186 0.88636 1.43911 1.19753 1.05593 1.13831 1.97631 1.56800 1.83087 1.28870 0.91591 0.90324 0.92872 0.97203 0.96975 0.92555 0.79144 0.76791 0.76466 0.79689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.72 9.06 71.98 0.65 -4.06 16 2 C -0.06 -3.17 2.50 30.59 0.08 -3.09 16 3 H 0.07 4.23 5.96 -2.39 -0.01 4.22 16 4 C 0.05 2.89 4.45 29.85 0.13 3.02 16 5 C -0.53 -33.95 8.53 25.60 0.22 -33.73 16 6 H 0.05 3.08 7.60 -2.91 -0.02 3.05 16 7 C 0.01 0.53 5.46 84.65 0.46 0.99 16 8 N -0.93 -59.10 13.29 21.45 0.28 -58.82 16 9 Si 0.96 49.32 29.54 68.60 2.03 51.34 16 10 H -0.27 -13.62 7.11 99.48 0.71 -12.91 16 11 H -0.27 -13.04 7.11 99.48 0.71 -12.34 16 12 H -0.28 -14.27 7.11 99.48 0.71 -13.56 16 13 S -0.08 -3.30 19.90 -56.49 -1.12 -4.42 16 14 C 0.04 1.39 6.14 84.79 0.52 1.91 16 15 C -0.09 -1.57 9.84 22.50 0.22 -1.34 16 16 C -0.04 -0.33 10.17 22.44 0.23 -0.11 16 17 C -0.09 -0.84 10.10 22.38 0.23 -0.61 16 18 C 0.06 1.28 10.69 84.64 0.90 2.19 16 19 N -0.15 -5.45 3.60 -192.18 -0.69 -6.14 16 20 O -0.61 -33.49 16.96 -38.77 -0.66 -34.15 16 21 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 22 H 0.08 2.65 8.14 -2.38 -0.02 2.63 16 23 H 0.05 1.76 7.84 -2.39 -0.02 1.74 16 24 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 25 H 0.01 0.74 8.14 -2.39 -0.02 0.72 16 26 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16 27 H 0.19 2.36 8.06 -2.91 -0.02 2.34 16 28 H 0.22 -0.79 8.06 -2.91 -0.02 -0.82 16 29 H 0.22 -0.50 8.06 -2.91 -0.02 -0.52 16 30 H 0.19 3.63 8.06 -2.91 -0.02 3.61 16 Total: -1.00 -95.45 276.04 4.60 -90.85 By element: Atomic # 1 Polarization: -4.94 SS G_CDS: 1.12 Total: -3.82 kcal Atomic # 6 Polarization: -38.48 SS G_CDS: 3.64 Total: -34.84 kcal Atomic # 7 Polarization: -64.55 SS G_CDS: -0.41 Total: -64.96 kcal Atomic # 8 Polarization: -33.49 SS G_CDS: -0.66 Total: -34.15 kcal Atomic # 14 Polarization: 49.32 SS G_CDS: 2.03 Total: 51.34 kcal Atomic # 16 Polarization: -3.30 SS G_CDS: -1.12 Total: -4.42 kcal Total: -95.45 4.60 -90.85 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787488669.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.122 kcal (2) G-P(sol) polarization free energy of solvation -95.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.849 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds