Wall clock time and date at job start Sun Mar 29 2020 22:17:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.46902 * 2 1 4 4 C 1.52998 * 109.47261 * 119.99643 * 2 1 3 5 5 C 1.50697 * 109.47011 * 185.00072 * 4 2 1 6 6 H 1.07996 * 120.00478 * 0.02562 * 5 4 2 7 7 C 1.37883 * 119.99595 * 179.97438 * 5 4 2 8 8 N 1.31513 * 119.99999 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99576 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47236 * 60.00605 * 9 7 5 11 11 H 1.48507 * 109.47234 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47463 * 300.00109 * 9 7 5 13 13 S 1.81398 * 109.47018 * 239.99786 * 2 1 3 14 14 C 1.76197 * 103.00001 * 66.80012 * 13 2 1 15 15 C 1.39080 * 119.70685 * 235.34852 * 14 13 2 16 16 C 1.38359 * 119.11206 * 179.97438 * 15 14 13 17 17 C 1.38843 * 118.52147 * 0.06933 * 16 15 14 18 18 C 1.38106 * 119.33468 * 359.97438 * 17 16 15 19 19 N 1.31997 * 120.84539 * 359.97438 * 18 17 16 20 20 O 1.41594 * 119.20148 * 179.97438 * 19 18 17 21 21 H 1.08999 * 109.47331 * 304.78964 * 1 2 3 22 22 H 1.08996 * 109.47143 * 64.79475 * 1 2 3 23 23 H 1.09010 * 109.46834 * 184.78932 * 1 2 3 24 24 H 1.09001 * 109.47293 * 305.00282 * 4 2 1 25 25 H 1.09004 * 109.47061 * 65.00050 * 4 2 1 26 26 H 0.97008 * 119.99486 * 179.97438 * 8 7 5 27 27 H 1.07999 * 120.44764 * 359.97438 * 15 14 13 28 28 H 1.07997 * 120.74221 * 180.02562 * 16 15 14 29 29 H 1.08007 * 120.33177 * 180.24795 * 17 16 15 30 30 H 1.07997 * 119.57972 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5419 -0.6148 1.3127 6 1 4.0789 -0.0854 0.5396 7 6 4.2303 -1.1924 2.3584 8 7 3.5763 -1.8367 3.3001 9 14 6.0919 -1.0600 2.4374 10 1 6.4843 0.3710 2.4967 11 1 6.5871 -1.7600 3.6499 12 1 6.6846 -1.6861 1.2282 13 16 2.1346 -0.8552 -1.4811 14 6 1.6291 0.2118 -2.7890 15 6 0.8507 -0.2904 -3.8263 16 6 0.4602 0.5584 -4.8468 17 6 0.8641 1.8858 -4.7960 18 6 1.6376 2.3176 -3.7365 19 7 1.9947 1.4857 -2.7759 20 8 2.7886 1.9655 -1.7062 21 1 -0.3634 0.5863 0.8440 22 1 -0.3633 0.4376 -0.9298 23 1 -0.3633 -1.0242 0.0858 24 1 1.6054 -0.2616 2.1370 25 1 1.7517 -1.7715 1.2057 26 1 4.0608 -2.2434 4.0356 27 1 0.5549 -1.3291 -3.8353 28 1 -0.1447 0.1964 -5.6649 29 1 0.5726 2.5748 -5.5750 30 1 1.9543 3.3492 -3.6933 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787488672.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:03 Heat of formation + Delta-G solvation = 52.139797 kcal Electronic energy + Delta-G solvation = -14659.946009 eV Core-core repulsion = 12163.498296 eV Total energy + Delta-G solvation = -2496.447714 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.91810 -34.66125 -34.29835 -32.04226 -31.70166 -29.52719 -27.41885 -24.41364 -23.96922 -23.20456 -20.47527 -18.36902 -17.17096 -16.52335 -16.19484 -15.39641 -15.13305 -14.77836 -14.50604 -14.28496 -13.05952 -12.71265 -12.41269 -12.00832 -11.75846 -11.54924 -11.20676 -10.94265 -10.69228 -10.49944 -10.43652 -10.18079 -9.41323 -9.21116 -9.07162 -8.80676 -8.30998 -8.16982 -7.07942 -5.91672 -3.91175 0.45977 0.67454 1.87999 2.66754 3.02309 3.38284 3.46077 3.46989 3.54335 4.41318 4.51515 4.58073 4.59689 4.68492 5.21399 5.45794 5.55412 5.70841 5.74679 5.78332 5.83936 6.02271 6.48296 6.64893 6.80846 6.87501 7.26253 7.59508 7.67728 8.08955 8.45795 9.16305 9.72332 11.19817 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.037283 B = 0.006877 C = 0.006412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.834197 B = 4070.749891 C = 4365.948264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.072 4.072 3 H 0.113 0.887 4 C 0.041 3.959 5 C -0.513 4.513 6 H 0.068 0.932 7 C 0.057 3.943 8 N -0.900 5.900 9 Si 0.893 3.107 10 H -0.276 1.276 11 H -0.289 1.289 12 H -0.276 1.276 13 S -0.024 6.024 14 C 0.065 3.935 15 C -0.099 4.099 16 C -0.083 4.083 17 C -0.134 4.134 18 C 0.071 3.929 19 N -0.116 5.116 20 O -0.517 6.517 21 H 0.063 0.937 22 H 0.033 0.967 23 H 0.062 0.938 24 H 0.037 0.963 25 H 0.024 0.976 26 H 0.260 0.740 27 H 0.164 0.836 28 H 0.151 0.849 29 H 0.158 0.842 30 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.887 3.754 -17.811 20.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.200 4.200 3 H 0.131 0.869 4 C 0.003 3.997 5 C -0.551 4.551 6 H 0.086 0.914 7 C -0.143 4.143 8 N -0.540 5.540 9 Si 0.721 3.279 10 H -0.202 1.202 11 H -0.215 1.215 12 H -0.201 1.201 13 S 0.216 5.784 14 C -0.171 4.171 15 C -0.123 4.123 16 C -0.110 4.110 17 C -0.155 4.155 18 C -0.078 4.078 19 N 0.202 4.798 20 O -0.574 6.574 21 H 0.082 0.918 22 H 0.053 0.947 23 H 0.081 0.919 24 H 0.055 0.945 25 H 0.042 0.958 26 H 0.069 0.931 27 H 0.182 0.818 28 H 0.168 0.832 29 H 0.175 0.825 30 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -8.993 2.731 -17.264 19.657 hybrid contribution 0.535 1.444 0.206 1.553 sum -8.458 4.175 -17.058 19.492 Atomic orbital electron populations 1.22088 0.95135 1.02076 1.00439 1.24010 0.95723 1.05269 0.95018 0.86889 1.19023 0.96775 0.95166 0.88750 1.21323 0.91489 1.33964 1.08371 0.91376 1.24979 0.98487 0.95284 0.95573 1.69957 1.35608 1.36291 1.12166 0.86622 0.85754 0.78354 0.77160 1.20159 1.21472 1.20127 1.85758 1.73908 1.23118 0.95579 1.24257 1.00118 0.88820 1.03921 1.21895 0.95397 1.02200 0.92766 1.21726 0.97970 0.93162 0.98141 1.21721 0.98317 0.97199 0.98291 1.22632 0.97698 0.98706 0.88723 1.43985 1.17932 1.04589 1.13294 1.97672 1.51842 1.82357 1.25504 0.91831 0.94742 0.91927 0.94486 0.95803 0.93052 0.81846 0.83172 0.82475 0.80590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 9.15 37.16 0.34 -2.18 16 2 C -0.07 -1.64 2.51 -26.73 -0.07 -1.71 16 3 H 0.11 2.91 5.99 -51.92 -0.31 2.60 16 4 C 0.04 1.11 4.45 -27.89 -0.12 0.99 16 5 C -0.51 -15.35 8.53 -34.44 -0.29 -15.65 16 6 H 0.07 2.11 7.60 -52.49 -0.40 1.71 16 7 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 8 N -0.90 -27.74 13.29 55.43 0.74 -27.00 16 9 Si 0.89 23.22 29.54 -169.99 -5.02 18.19 16 10 H -0.28 -7.17 7.11 56.52 0.40 -6.76 16 11 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 12 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 13 S -0.02 -0.49 19.89 -107.50 -2.14 -2.63 16 14 C 0.06 1.09 5.94 -16.93 -0.10 0.99 16 15 C -0.10 -1.10 9.84 -39.22 -0.39 -1.49 16 16 C -0.08 -0.64 10.17 -39.31 -0.40 -1.04 16 17 C -0.13 -1.06 10.11 -39.41 -0.40 -1.46 16 18 C 0.07 0.89 10.69 -17.53 -0.19 0.70 16 19 N -0.12 -2.13 3.60 -12.09 -0.04 -2.17 16 20 O -0.52 -13.02 16.99 -11.47 -0.19 -13.22 16 21 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 22 H 0.03 0.56 7.55 -51.93 -0.39 0.17 16 23 H 0.06 1.06 8.14 -51.92 -0.42 0.64 16 24 H 0.04 1.04 8.14 -51.93 -0.42 0.62 16 25 H 0.02 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 27 H 0.16 1.42 8.06 -52.49 -0.42 1.00 16 28 H 0.15 0.56 8.06 -52.49 -0.42 0.14 16 29 H 0.16 0.59 8.06 -52.48 -0.42 0.17 16 30 H 0.18 1.85 8.06 -52.49 -0.42 1.42 16 LS Contribution 275.70 15.07 4.15 4.15 Total: -1.00 -37.76 275.70 -7.84 -45.60 By element: Atomic # 1 Polarization: -0.07 SS G_CDS: -3.62 Total: -3.69 kcal Atomic # 6 Polarization: -17.51 SS G_CDS: -1.71 Total: -19.22 kcal Atomic # 7 Polarization: -29.87 SS G_CDS: 0.69 Total: -29.18 kcal Atomic # 8 Polarization: -13.02 SS G_CDS: -0.19 Total: -13.22 kcal Atomic # 14 Polarization: 23.22 SS G_CDS: -5.02 Total: 18.19 kcal Atomic # 16 Polarization: -0.49 SS G_CDS: -2.14 Total: -2.63 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -37.76 -7.84 -45.60 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787488672.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.735 kcal (2) G-P(sol) polarization free energy of solvation -37.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.596 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds