Wall clock time and date at job start Sun Mar 29 2020 21:55:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35896 * 116.99956 * 2 1 4 4 C 1.38604 * 120.02272 * 0.02562 * 3 2 1 5 5 C 1.38795 * 119.87611 * 179.97438 * 4 3 2 6 6 O 1.35714 * 120.04195 * 179.97438 * 5 4 3 7 7 C 1.22319 * 116.99857 * 174.37062 * 6 5 4 8 8 H 1.07994 * 120.00184 * 5.09077 * 7 6 5 9 9 C 1.46633 * 120.00023 * 185.08694 * 7 6 5 10 10 N 1.29368 * 119.99974 * 0.02562 * 9 7 6 11 11 Si 1.86794 * 120.00299 * 179.97438 * 9 7 6 12 12 H 1.48506 * 109.46974 * 0.02562 * 11 9 7 13 13 H 1.48505 * 109.47253 * 119.99956 * 11 9 7 14 14 H 1.48493 * 109.47414 * 240.00431 * 11 9 7 15 15 C 1.38972 * 119.91561 * 359.97438 * 5 4 3 16 16 C 1.38097 * 120.03469 * 0.02562 * 15 5 4 17 17 C 1.38243 * 120.12890 * 0.23071 * 16 15 5 18 18 N 1.48018 * 119.95707 * 179.72264 * 17 16 15 19 19 O 1.31698 * 120.00014 * 0.02562 * 18 17 16 20 20 O 1.31706 * 119.99934 * 180.02562 * 18 17 16 21 21 H 1.08993 * 109.47329 * 180.02562 * 1 2 3 22 22 H 1.08999 * 109.46846 * 299.99803 * 1 2 3 23 23 H 1.09000 * 109.47531 * 59.99286 * 1 2 3 24 24 H 1.08001 * 120.06008 * 359.97438 * 4 3 2 25 25 H 0.96996 * 120.00088 * 179.97438 * 10 9 7 26 26 H 1.07997 * 119.98390 * 179.97438 * 15 5 4 27 27 H 1.08000 * 119.93920 * 179.97438 * 16 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 1.2915 2.3736 0.0005 5 6 1.9248 3.6086 0.0011 6 8 1.1893 4.7492 0.0011 7 6 1.8000 5.8036 0.1085 8 1 2.8799 5.8040 0.1150 9 6 1.0657 7.0672 0.2283 10 7 -0.2280 7.0668 0.2210 11 14 1.9981 8.6774 0.3930 12 1 3.4584 8.4078 0.3752 13 1 1.6464 9.5712 -0.7395 14 1 1.6310 9.3332 1.6737 15 6 3.3129 3.6758 0.0016 16 6 4.0610 2.5150 0.0011 17 6 3.4320 1.2840 -0.0048 18 7 4.2376 0.0423 -0.0116 19 8 5.5528 0.1107 -0.0115 20 8 3.6392 -1.1309 -0.0177 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 0.2129 2.3186 0.0005 25 1 -0.7137 7.9026 0.3006 26 1 3.8067 4.6362 0.0016 27 1 5.1397 2.5690 0.0011 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000794447806.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:34 Heat of formation + Delta-G solvation = 5.080700 kcal Electronic energy + Delta-G solvation = -16531.791665 eV Core-core repulsion = 13454.717350 eV Total energy + Delta-G solvation = -3077.074315 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.067 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.10733 -39.38426 -37.42947 -36.04063 -33.71607 -32.98049 -30.35244 -29.70273 -27.05399 -26.40334 -24.73961 -21.97615 -21.42202 -19.35421 -18.47605 -17.26537 -16.75865 -16.18771 -15.59481 -15.55072 -15.16753 -15.02133 -14.46575 -14.42512 -13.78433 -12.95902 -12.72410 -12.33051 -11.97227 -11.65191 -11.54588 -11.27196 -11.00321 -10.53957 -10.03817 -9.99640 -9.83698 -9.74259 -9.51906 -8.32836 -7.86858 -7.77538 -4.42073 0.46928 2.03788 2.08951 2.53001 2.57413 2.62374 2.65588 3.18663 3.61188 3.77349 4.25424 4.40609 5.27158 5.39560 5.46921 5.56814 5.71133 5.80446 5.95777 6.00555 6.22519 6.43979 6.55101 6.75934 6.96977 7.08700 7.20623 7.54705 7.83589 8.18125 8.90490 9.35813 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.035758 B = 0.006392 C = 0.005443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.859217 B = 4379.229627 C = 5143.086814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.286 6.286 3 C 0.222 3.778 4 C -0.283 4.283 5 C 0.095 3.905 6 O -0.051 6.051 7 C -0.349 4.349 8 H 0.113 0.887 9 C 0.044 3.956 10 N -0.756 5.756 11 Si 0.959 3.041 12 H -0.249 1.249 13 H -0.262 1.262 14 H -0.261 1.261 15 C -0.240 4.240 16 C 0.009 3.991 17 C -0.138 4.138 18 N 0.041 4.959 19 O -0.301 6.301 20 O -0.254 6.254 21 H 0.098 0.902 22 H 0.056 0.944 23 H 0.056 0.944 24 H 0.134 0.866 25 H 0.303 0.697 26 H 0.139 0.861 27 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.316 3.562 0.182 4.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.196 6.196 3 C 0.173 3.827 4 C -0.305 4.305 5 C 0.032 3.968 6 O 0.063 5.937 7 C -0.428 4.428 8 H 0.130 0.870 9 C -0.179 4.179 10 N -0.379 5.379 11 Si 0.779 3.221 12 H -0.172 1.172 13 H -0.186 1.186 14 H -0.186 1.186 15 C -0.261 4.261 16 C -0.011 4.011 17 C -0.238 4.238 18 N 0.476 4.524 19 O -0.461 6.461 20 O -0.425 6.425 21 H 0.116 0.884 22 H 0.074 0.926 23 H 0.074 0.926 24 H 0.152 0.848 25 H 0.116 0.884 26 H 0.156 0.844 27 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -2.935 3.906 0.175 4.889 hybrid contribution 0.290 0.566 0.030 0.637 sum -2.645 4.472 0.204 5.200 Atomic orbital electron populations 1.23092 0.78953 1.03555 1.01555 1.86386 1.20855 1.25440 1.86967 1.17946 0.88863 0.84637 0.91280 1.19578 0.99323 0.88487 1.23078 1.18765 0.89559 0.84979 1.03475 1.80214 1.39092 1.12763 1.61664 1.21847 0.94663 0.82958 1.43289 0.86953 1.27520 0.95589 1.00223 0.94614 1.68895 1.08498 1.32212 1.28324 0.85309 0.80374 0.76745 0.79638 1.17184 1.18636 1.18597 1.20560 0.92793 0.97939 1.14823 1.20190 1.00064 0.88682 0.92156 1.18961 0.86697 0.82893 1.35236 1.49823 1.02287 1.03617 0.96636 1.96125 0.90322 1.95938 1.63686 1.96175 1.73301 1.12296 1.60753 0.88402 0.92553 0.92568 0.84825 0.88376 0.84374 0.84375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 48. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 9.81 101.05 0.99 1.33 15 2 O -0.29 -5.74 8.40 -41.60 -0.35 -6.09 15 3 C 0.22 4.72 6.67 -39.24 -0.26 4.46 15 4 C -0.28 -5.72 8.98 -39.24 -0.35 -6.07 15 5 C 0.10 2.01 6.58 -39.10 -0.26 1.75 15 6 O -0.05 -1.15 9.28 21.01 0.19 -0.95 15 7 C -0.35 -7.34 9.48 34.12 0.32 -7.01 15 8 H 0.11 2.16 5.02 -52.49 -0.26 1.90 15 9 C 0.04 0.86 5.69 -15.20 -0.09 0.78 15 10 N -0.76 -15.86 13.66 55.99 0.76 -15.10 15 11 Si 0.96 14.37 29.64 -169.99 -5.04 9.33 15 12 H -0.25 -3.64 7.11 56.52 0.40 -3.24 15 13 H -0.26 -3.84 7.11 56.52 0.40 -3.44 15 14 H -0.26 -3.85 7.11 56.52 0.40 -3.45 15 15 C -0.24 -4.74 9.12 -39.36 -0.36 -5.10 15 16 C 0.01 0.19 9.57 -39.63 -0.38 -0.19 15 17 C -0.14 -3.14 6.90 -79.74 -0.55 -3.69 15 18 N 0.04 1.01 4.98 34.06 0.17 1.18 15 19 O -0.30 -7.59 19.15 -31.57 -0.60 -8.20 15 20 O -0.25 -6.54 17.88 -39.24 -0.70 -7.24 15 21 H 0.10 1.13 8.14 -51.93 -0.42 0.71 15 22 H 0.06 0.74 7.66 -51.93 -0.40 0.35 15 23 H 0.06 0.74 7.66 -51.93 -0.40 0.34 15 24 H 0.13 2.44 6.30 -52.49 -0.33 2.11 15 25 H 0.30 5.50 8.26 -40.82 -0.34 5.16 15 26 H 0.14 2.44 5.69 -52.49 -0.30 2.14 15 27 H 0.14 2.57 7.57 -52.49 -0.40 2.17 15 LS Contribution 253.41 15.07 3.82 3.82 Total: -1.00 -27.92 253.41 -4.32 -32.24 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: -1.64 Total: 4.75 kcal Atomic # 6 Polarization: -12.81 SS G_CDS: -0.93 Total: -13.74 kcal Atomic # 7 Polarization: -14.85 SS G_CDS: 0.93 Total: -13.92 kcal Atomic # 8 Polarization: -21.02 SS G_CDS: -1.46 Total: -22.48 kcal Atomic # 14 Polarization: 14.37 SS G_CDS: -5.04 Total: 9.33 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -27.92 -4.32 -32.24 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794447806.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.316 kcal (2) G-P(sol) polarization free energy of solvation -27.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.236 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds