Wall clock time and date at job start Sun Mar 29 2020 21:55:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35896 * 116.99956 * 2 1 4 4 C 1.38604 * 120.02272 * 0.02562 * 3 2 1 5 5 C 1.38795 * 119.87611 * 179.97438 * 4 3 2 6 6 O 1.35714 * 120.04195 * 179.97438 * 5 4 3 7 7 C 1.22319 * 116.99857 * 174.37062 * 6 5 4 8 8 H 1.07994 * 120.00184 * 5.09077 * 7 6 5 9 9 C 1.46633 * 120.00023 * 185.08694 * 7 6 5 10 10 N 1.29368 * 119.99974 * 0.02562 * 9 7 6 11 11 Si 1.86794 * 120.00299 * 179.97438 * 9 7 6 12 12 H 1.48506 * 109.46974 * 0.02562 * 11 9 7 13 13 H 1.48505 * 109.47253 * 119.99956 * 11 9 7 14 14 H 1.48493 * 109.47414 * 240.00431 * 11 9 7 15 15 C 1.38972 * 119.91561 * 359.97438 * 5 4 3 16 16 C 1.38097 * 120.03469 * 0.02562 * 15 5 4 17 17 C 1.38243 * 120.12890 * 0.23071 * 16 15 5 18 18 N 1.48018 * 119.95707 * 179.72264 * 17 16 15 19 19 O 1.31698 * 120.00014 * 0.02562 * 18 17 16 20 20 O 1.31706 * 119.99934 * 180.02562 * 18 17 16 21 21 H 1.08993 * 109.47329 * 180.02562 * 1 2 3 22 22 H 1.08999 * 109.46846 * 299.99803 * 1 2 3 23 23 H 1.09000 * 109.47531 * 59.99286 * 1 2 3 24 24 H 1.08001 * 120.06008 * 359.97438 * 4 3 2 25 25 H 0.96996 * 120.00088 * 179.97438 * 10 9 7 26 26 H 1.07997 * 119.98390 * 179.97438 * 15 5 4 27 27 H 1.08000 * 119.93920 * 179.97438 * 16 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 1.2915 2.3736 0.0005 5 6 1.9248 3.6086 0.0011 6 8 1.1893 4.7492 0.0011 7 6 1.8000 5.8036 0.1085 8 1 2.8799 5.8040 0.1150 9 6 1.0657 7.0672 0.2283 10 7 -0.2280 7.0668 0.2210 11 14 1.9981 8.6774 0.3930 12 1 3.4584 8.4078 0.3752 13 1 1.6464 9.5712 -0.7395 14 1 1.6310 9.3332 1.6737 15 6 3.3129 3.6758 0.0016 16 6 4.0610 2.5150 0.0011 17 6 3.4320 1.2840 -0.0048 18 7 4.2376 0.0423 -0.0116 19 8 5.5528 0.1107 -0.0115 20 8 3.6392 -1.1309 -0.0177 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 0.2129 2.3186 0.0005 25 1 -0.7137 7.9026 0.3006 26 1 3.8067 4.6362 0.0016 27 1 5.1397 2.5690 0.0011 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000794447806.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:34 Heat of formation + Delta-G solvation = -11.155686 kcal Electronic energy + Delta-G solvation = -16532.495727 eV Core-core repulsion = 13454.717350 eV Total energy + Delta-G solvation = -3077.778378 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.067 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.03262 -40.84724 -38.86001 -37.54162 -35.59162 -34.49725 -31.90044 -31.17344 -28.39572 -28.09980 -26.39195 -23.50323 -23.04843 -21.00163 -20.13928 -18.86517 -18.33281 -17.61960 -17.22520 -17.18350 -16.69033 -16.62147 -16.01009 -15.93312 -15.22742 -14.31999 -14.23005 -13.79342 -13.36053 -13.17586 -12.94852 -12.49649 -12.10353 -11.89649 -11.68946 -11.60834 -11.40085 -11.31283 -11.25735 -9.90099 -9.56341 -9.41569 -6.06678 -1.35386 0.45795 0.61390 1.12939 1.22867 1.42345 1.57174 1.92402 2.18068 2.29638 2.56172 2.76873 3.81894 3.93687 4.19996 4.31107 4.36222 4.39091 4.49893 4.68780 4.77556 4.83048 4.98494 5.22577 5.40122 5.47915 5.66865 5.83455 6.45671 6.65206 7.02357 7.53010 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.035758 B = 0.006392 C = 0.005443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.859217 B = 4379.229627 C = 5143.086814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.313 6.313 3 C 0.189 3.811 4 C -0.259 4.259 5 C 0.013 3.987 6 O -0.039 6.039 7 C -0.283 4.283 8 H 0.147 0.853 9 C 0.011 3.989 10 N -0.745 5.745 11 Si 1.033 2.967 12 H -0.235 1.235 13 H -0.250 1.250 14 H -0.251 1.251 15 C -0.197 4.197 16 C -0.026 4.026 17 C -0.134 4.134 18 N 0.045 4.955 19 O -0.396 6.396 20 O -0.365 6.365 21 H 0.119 0.881 22 H 0.067 0.933 23 H 0.067 0.933 24 H 0.149 0.851 25 H 0.330 0.670 26 H 0.166 0.834 27 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.239 11.862 0.469 12.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.224 6.224 3 C 0.140 3.860 4 C -0.281 4.281 5 C -0.049 4.049 6 O 0.080 5.920 7 C -0.365 4.365 8 H 0.164 0.836 9 C -0.215 4.215 10 N -0.368 5.368 11 Si 0.846 3.154 12 H -0.157 1.157 13 H -0.174 1.174 14 H -0.175 1.175 15 C -0.218 4.218 16 C -0.046 4.046 17 C -0.244 4.244 18 N 0.439 4.561 19 O -0.530 6.530 20 O -0.505 6.505 21 H 0.138 0.862 22 H 0.085 0.915 23 H 0.085 0.915 24 H 0.166 0.834 25 H 0.145 0.855 26 H 0.183 0.817 27 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -5.733 11.783 0.450 13.112 hybrid contribution 0.175 -0.157 -0.024 0.236 sum -5.558 11.627 0.426 12.894 Atomic orbital electron populations 1.23412 0.76623 1.05457 1.02461 1.86388 1.23415 1.25550 1.87074 1.18016 0.88712 0.85325 0.93942 1.19613 0.99755 0.87892 1.20871 1.18685 0.89966 0.84025 1.12241 1.80221 1.41083 1.13939 1.56781 1.23480 0.97272 0.83106 1.32676 0.83589 1.29099 0.96531 1.02869 0.93038 1.68875 1.10318 1.35634 1.21970 0.84299 0.79618 0.71112 0.80347 1.15717 1.17404 1.17484 1.20680 0.91987 0.98361 1.10789 1.20207 1.00448 0.88297 0.95638 1.19526 0.87658 0.82964 1.34210 1.49738 1.01781 1.03719 1.00901 1.96005 0.91647 1.96022 1.69310 1.96070 1.73265 1.13720 1.67486 0.86241 0.91482 0.91481 0.83380 0.85517 0.81710 0.83871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 48. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.44 9.81 113.37 1.11 1.55 15 2 O -0.31 -13.78 8.40 -71.17 -0.60 -14.38 15 3 C 0.19 8.60 6.67 22.49 0.15 8.75 15 4 C -0.26 -10.36 8.98 22.49 0.20 -10.16 15 5 C 0.01 0.50 6.58 22.58 0.15 0.65 15 6 O -0.04 -1.52 9.28 52.26 0.49 -1.03 15 7 C -0.28 -9.55 9.48 70.01 0.66 -8.88 15 8 H 0.15 4.23 5.02 -2.91 -0.01 4.21 15 9 C 0.01 0.32 5.69 87.25 0.50 0.81 15 10 N -0.74 -24.77 13.66 23.22 0.32 -24.46 15 11 Si 1.03 20.48 29.64 68.60 2.03 22.51 15 12 H -0.24 -4.39 7.11 99.48 0.71 -3.68 15 13 H -0.25 -4.78 7.11 99.48 0.71 -4.07 15 14 H -0.25 -4.84 7.11 99.48 0.71 -4.14 15 15 C -0.20 -7.29 9.12 22.41 0.20 -7.09 15 16 C -0.03 -1.10 9.57 22.24 0.21 -0.88 15 17 C -0.13 -6.67 6.90 36.51 0.25 -6.42 15 18 N 0.05 2.62 4.98 -46.14 -0.23 2.39 15 19 O -0.40 -23.43 19.15 3.52 0.07 -23.36 15 20 O -0.37 -22.17 17.88 10.83 0.19 -21.98 15 21 H 0.12 2.91 8.14 -2.39 -0.02 2.89 15 22 H 0.07 1.79 7.66 -2.39 -0.02 1.78 15 23 H 0.07 1.79 7.66 -2.39 -0.02 1.77 15 24 H 0.15 5.20 6.30 -2.91 -0.02 5.18 15 25 H 0.33 8.99 8.26 -92.71 -0.77 8.22 15 26 H 0.17 4.89 5.69 -2.91 -0.02 4.87 15 27 H 0.14 5.75 7.57 -2.91 -0.02 5.72 15 Total: -1.00 -66.17 253.41 6.94 -59.23 By element: Atomic # 1 Polarization: 21.54 SS G_CDS: 1.23 Total: 22.76 kcal Atomic # 6 Polarization: -25.12 SS G_CDS: 3.44 Total: -21.67 kcal Atomic # 7 Polarization: -22.16 SS G_CDS: 0.09 Total: -22.07 kcal Atomic # 8 Polarization: -60.91 SS G_CDS: 0.15 Total: -60.76 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: 2.03 Total: 22.51 kcal Total: -66.17 6.94 -59.23 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794447806.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.074 kcal (2) G-P(sol) polarization free energy of solvation -66.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds