Wall clock time and date at job start Sun Mar 29 2020 21:55:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34864 * 117.00285 * 2 1 4 4 O 1.21601 * 120.00233 * 359.97438 * 3 2 1 5 5 C 1.46645 * 119.99912 * 179.97438 * 3 2 1 6 6 C 1.36420 * 125.84301 * 179.97438 * 5 3 2 7 7 C 1.41325 * 106.99857 * 179.71811 * 6 5 3 8 8 C 1.47224 * 126.46517 * 180.24500 * 7 6 5 9 9 O 1.21554 * 120.00300 * 0.02562 * 8 7 6 10 10 O 1.34793 * 119.99470 * 180.02562 * 8 7 6 11 11 C 1.34889 * 117.00050 * 180.02562 * 10 8 7 12 12 H 1.08005 * 119.99429 * 359.97438 * 11 10 8 13 13 C 1.38764 * 120.00513 * 179.97438 * 11 10 8 14 14 N 1.31448 * 119.99581 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 120.00279 * 179.97438 * 13 11 10 16 16 H 1.48491 * 109.47184 * 89.99884 * 15 13 11 17 17 H 1.48503 * 109.47284 * 209.99964 * 15 13 11 18 18 H 1.48509 * 109.47054 * 329.99745 * 15 13 11 19 19 C 1.38355 * 107.06400 * 0.27003 * 7 6 5 20 20 N 1.34224 * 108.39678 * 359.97438 * 19 7 6 21 21 H 0.96998 * 125.38226 * 180.02562 * 20 19 7 22 22 H 1.09006 * 109.47443 * 300.00360 * 1 2 3 23 23 H 1.09007 * 109.46898 * 60.00146 * 1 2 3 24 24 H 1.08999 * 109.47429 * 180.02562 * 1 2 3 25 25 H 1.08002 * 126.50411 * 359.97438 * 6 5 3 26 26 H 0.97000 * 119.99494 * 179.97438 * 14 13 11 27 27 H 1.07993 * 125.80388 * 180.02562 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0643 1.2016 0.0000 4 8 1.4021 2.2215 -0.0005 5 6 3.5288 1.2783 0.0006 6 6 4.2687 2.4244 0.0001 7 6 5.6282 2.0384 0.0076 8 6 6.7932 2.9385 0.0150 9 8 6.6307 4.1431 0.0155 10 8 8.0402 2.4266 0.0212 11 6 9.0631 3.3059 0.0283 12 1 8.8628 4.3672 0.0284 13 6 10.3726 2.8469 0.0355 14 7 10.6163 1.5552 0.0359 15 14 11.7891 4.0646 0.0446 16 1 12.1564 4.3862 1.4470 17 1 12.9590 3.4684 -0.6491 18 1 11.3781 5.3074 -0.6569 19 6 5.6576 0.6552 0.0061 20 7 4.3932 0.2047 -0.0013 21 1 4.1297 -0.7288 -0.0035 22 1 -0.3634 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3634 -1.0276 0.0005 25 1 3.8878 3.4350 -0.0011 26 1 11.5317 1.2344 0.0405 27 1 6.5466 0.0422 0.0109 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000814530234.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:44 Heat of formation + Delta-G solvation = -143.280340 kcal Electronic energy + Delta-G solvation = -16019.495409 eV Core-core repulsion = 12935.987677 eV Total energy + Delta-G solvation = -3083.507733 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.067 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.68431 -41.11429 -40.48643 -37.58556 -37.12480 -34.24911 -32.59160 -31.29684 -28.67285 -27.50373 -24.73797 -24.07768 -21.59180 -21.10322 -19.94303 -19.79125 -18.23179 -17.89606 -17.54936 -16.64916 -16.53444 -16.31991 -16.10761 -15.29884 -14.72455 -14.66921 -14.32833 -14.17476 -13.58224 -13.51488 -13.13781 -13.06453 -12.37193 -12.13964 -11.97358 -11.95402 -11.88370 -11.15469 -10.64751 -10.31959 -9.61932 -8.50513 -6.26446 0.04378 0.62028 1.38160 1.44773 1.45178 1.55089 1.81256 1.93321 2.20145 2.37424 2.92196 3.07328 3.75339 3.90495 4.11765 4.27307 4.34659 4.35542 4.71690 4.78115 4.97739 5.12902 5.19200 5.37201 5.48101 5.87937 6.30352 6.55084 6.70825 6.95770 7.81906 8.70127 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.071962 B = 0.004636 C = 0.004366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 388.998559 B = 6038.034393 C = 6411.866724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.357 6.357 3 C 0.548 3.452 4 O -0.527 6.527 5 C -0.052 4.052 6 C -0.051 4.051 7 C -0.237 4.237 8 C 0.469 3.531 9 O -0.592 6.592 10 O -0.232 6.232 11 C -0.418 4.418 12 H 0.078 0.922 13 C -0.001 4.001 14 N -0.897 5.897 15 Si 1.015 2.985 16 H -0.261 1.261 17 H -0.259 1.259 18 H -0.267 1.267 19 C 0.139 3.861 20 N -0.489 5.489 21 H 0.450 0.550 22 H 0.064 0.936 23 H 0.064 0.936 24 H 0.140 0.860 25 H 0.147 0.853 26 H 0.279 0.721 27 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.327 -9.891 -0.052 17.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.273 6.273 3 C 0.394 3.606 4 O -0.417 6.417 5 C -0.161 4.161 6 C -0.077 4.077 7 C -0.243 4.243 8 C 0.319 3.681 9 O -0.492 6.492 10 O -0.140 6.140 11 C -0.494 4.494 12 H 0.095 0.905 13 C -0.201 4.201 14 N -0.535 5.535 15 Si 0.834 3.166 16 H -0.186 1.186 17 H -0.183 1.183 18 H -0.192 1.192 19 C -0.006 4.006 20 N -0.086 5.086 21 H 0.293 0.707 22 H 0.083 0.917 23 H 0.083 0.917 24 H 0.158 0.842 25 H 0.164 0.836 26 H 0.088 0.912 27 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -14.579 -9.636 -0.058 17.476 hybrid contribution 0.337 0.588 0.007 0.678 sum -14.241 -9.048 -0.051 16.873 Atomic orbital electron populations 1.23663 0.73474 1.06243 1.02910 1.86529 1.25925 1.30701 1.84157 1.19593 0.86381 0.82158 0.72427 1.90903 1.65853 1.37020 1.47930 1.18640 0.87255 0.87713 1.22484 1.21024 0.90401 0.98247 0.98011 1.18788 0.90871 0.93371 1.21307 1.20774 0.84162 0.86775 0.76388 1.90593 1.87191 1.18244 1.53129 1.83909 1.13305 1.39698 1.77095 1.21394 0.83884 0.89448 1.54635 0.90452 1.26431 0.99571 0.99310 0.94833 1.70039 1.22361 1.14261 1.46792 0.84656 0.75643 0.76815 0.79443 1.18575 1.18252 1.19173 1.22981 0.88454 0.93578 0.95588 1.41589 1.04274 1.09706 1.52991 0.70690 0.91686 0.91676 0.84196 0.83569 0.91164 0.76648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.57 113.37 1.20 1.58 15 2 O -0.36 -6.89 10.58 -57.78 -0.61 -7.50 15 3 C 0.55 14.61 7.93 70.02 0.56 15.17 15 4 O -0.53 -17.11 16.65 19.51 0.32 -16.79 15 5 C -0.05 -1.49 7.02 39.97 0.28 -1.21 15 6 C -0.05 -1.88 10.37 22.60 0.23 -1.64 15 7 C -0.24 -9.59 6.13 -20.13 -0.12 -9.72 15 8 C 0.47 25.16 7.89 70.18 0.55 25.71 15 9 O -0.59 -35.32 16.17 19.66 0.32 -35.00 15 10 O -0.23 -13.63 9.57 10.36 0.10 -13.53 15 11 C -0.42 -25.56 9.65 67.95 0.66 -24.90 15 12 H 0.08 4.88 6.86 -2.91 -0.02 4.86 15 13 C 0.00 -0.05 5.49 84.88 0.47 0.41 15 14 N -0.90 -51.44 13.67 21.63 0.30 -51.15 15 15 Si 1.02 43.38 29.55 68.60 2.03 45.41 15 16 H -0.26 -10.58 7.11 99.48 0.71 -9.87 15 17 H -0.26 -10.13 7.11 99.48 0.71 -9.42 15 18 H -0.27 -11.36 7.11 99.48 0.71 -10.65 15 19 C 0.14 4.06 11.76 84.36 0.99 5.05 15 20 N -0.49 -10.78 6.01 -183.32 -1.10 -11.89 15 21 H 0.45 5.79 8.96 -92.71 -0.83 4.96 15 22 H 0.06 0.86 8.14 -2.38 -0.02 0.84 15 23 H 0.06 0.86 8.14 -2.38 -0.02 0.84 15 24 H 0.14 0.73 8.14 -2.39 -0.02 0.71 15 25 H 0.15 5.60 8.06 -2.91 -0.02 5.57 15 26 H 0.28 14.47 8.31 -92.71 -0.77 13.70 15 27 H 0.22 5.49 8.06 -2.91 -0.02 5.47 15 Total: -1.00 -79.55 265.00 6.56 -72.99 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: 0.39 Total: 7.00 kcal Atomic # 6 Polarization: 5.64 SS G_CDS: 4.81 Total: 10.46 kcal Atomic # 7 Polarization: -62.23 SS G_CDS: -0.81 Total: -63.04 kcal Atomic # 8 Polarization: -72.95 SS G_CDS: 0.13 Total: -72.82 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Total: -79.55 6.56 -72.99 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000814530234.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.290 kcal (2) G-P(sol) polarization free energy of solvation -79.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds