Wall clock time and date at job start Sun Mar 29 2020 22:00:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86795 * 120.00175 * 2 1 4 4 H 1.48507 * 109.46882 * 269.99883 * 3 2 1 5 5 H 1.48505 * 109.47277 * 29.99622 * 3 2 1 6 6 H 1.48493 * 109.47293 * 149.99759 * 3 2 1 7 7 C 1.37882 * 119.99905 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99911 * 0.02562 * 7 2 1 9 9 C 1.50694 * 119.99717 * 179.97438 * 7 2 1 10 10 C 1.53008 * 109.46908 * 180.02562 * 9 7 2 11 11 O 1.45203 * 109.46780 * 180.02562 * 10 9 7 12 12 C 1.34703 * 116.99738 * 180.02562 * 11 10 9 13 13 O 1.21457 * 120.00006 * 359.97438 * 12 11 10 14 14 C 1.47887 * 120.00260 * 180.02562 * 12 11 10 15 15 N 1.32849 * 119.75105 * 359.97438 * 14 12 11 16 16 C 1.31412 * 121.65941 * 179.97438 * 15 14 12 17 17 C 1.38710 * 120.98715 * 0.02562 * 16 15 14 18 18 C 1.38434 * 119.40355 * 0.25448 * 17 16 15 19 19 C 1.38979 * 118.46698 * 359.50256 * 18 17 16 20 20 F 1.35104 * 120.50320 * 180.21801 * 19 18 17 21 21 H 0.96995 * 119.99910 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.47027 * 60.00552 * 9 7 2 23 23 H 1.08991 * 109.47678 * 300.00248 * 9 7 2 24 24 H 1.08993 * 109.47161 * 60.00035 * 10 9 7 25 25 H 1.09000 * 109.46823 * 300.00183 * 10 9 7 26 26 H 1.07998 * 119.50432 * 180.02562 * 16 15 14 27 27 H 1.08002 * 120.29422 * 179.97438 * 17 16 15 28 28 H 1.08000 * 120.76664 * 179.72477 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4002 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0216 -2.6366 0.0001 11 8 5.4736 -2.6366 0.0001 12 6 6.0851 -3.8368 -0.0003 13 8 5.4236 -4.8554 -0.0002 14 6 7.5620 -3.9142 0.0003 15 7 8.2807 -2.7969 0.0007 16 6 9.5946 -2.8220 0.0018 17 6 10.2859 -4.0246 0.0019 18 6 9.5791 -5.2149 -0.0044 19 6 8.1904 -5.1607 -0.0001 20 9 7.4597 -6.2971 -0.0016 21 1 -0.4850 0.8400 -0.0004 22 1 3.8752 -0.6797 0.8895 23 1 3.8746 -0.6808 -0.8904 24 1 3.6579 -3.1506 -0.8896 25 1 3.6585 -3.1502 0.8903 26 1 10.1443 -1.8924 0.0025 27 1 11.3659 -4.0321 0.0024 28 1 10.0949 -6.1637 -0.0089 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000850132333.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:27 Heat of formation + Delta-G solvation = -94.093807 kcal Electronic energy + Delta-G solvation = -16004.882355 eV Core-core repulsion = 12935.880301 eV Total energy + Delta-G solvation = -3069.002055 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.074 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -49.22343 -40.68487 -39.47667 -36.23263 -33.36497 -32.98832 -31.52093 -30.63544 -26.08750 -24.67869 -23.81173 -21.47824 -20.60082 -18.32627 -17.96993 -17.34074 -16.94360 -16.48093 -16.06164 -15.67413 -15.44487 -14.32446 -14.18090 -13.91890 -13.51619 -13.31592 -13.23599 -12.77318 -12.38935 -11.51803 -11.27198 -10.78608 -10.67530 -10.39510 -10.27255 -9.92499 -9.84459 -9.69398 -9.40003 -9.32085 -8.59425 -6.10297 -4.11389 0.09419 0.62408 2.40224 2.72252 3.31182 3.38126 3.39528 3.44157 3.62975 3.89075 4.19567 4.38684 4.41837 4.56137 4.93527 5.23442 5.24526 5.34710 5.45688 5.94020 5.98392 6.07648 6.46666 6.67935 7.16313 7.25365 7.31452 7.64828 8.01906 8.42220 8.91250 9.49318 11.02184 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.042227 B = 0.005077 C = 0.004547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.923690 B = 5513.601105 C = 6156.077935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.072 3.928 3 Si 0.881 3.119 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.262 1.262 7 C -0.527 4.527 8 H 0.076 0.924 9 C -0.008 4.008 10 C 0.079 3.921 11 O -0.333 6.333 12 C 0.511 3.489 13 O -0.492 6.492 14 C 0.067 3.933 15 N -0.404 5.404 16 C 0.085 3.915 17 C -0.116 4.116 18 C -0.121 4.121 19 C 0.113 3.887 20 F -0.104 7.104 21 H 0.266 0.734 22 H 0.030 0.970 23 H 0.025 0.975 24 H 0.067 0.933 25 H 0.067 0.933 26 H 0.174 0.826 27 H 0.153 0.847 28 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.502 -7.729 0.022 24.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.130 4.130 3 Si 0.708 3.292 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.186 1.186 7 C -0.565 4.565 8 H 0.094 0.906 9 C -0.046 4.046 10 C 0.007 3.993 11 O -0.248 6.248 12 C 0.353 3.647 13 O -0.379 6.379 14 C -0.070 4.070 15 N -0.114 5.114 16 C -0.076 4.076 17 C -0.136 4.136 18 C -0.147 4.147 19 C 0.090 3.910 20 F -0.082 7.082 21 H 0.075 0.925 22 H 0.048 0.952 23 H 0.043 0.957 24 H 0.086 0.914 25 H 0.086 0.914 26 H 0.191 0.809 27 H 0.171 0.829 28 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 22.552 -7.145 0.025 23.657 hybrid contribution 0.570 -0.213 -0.025 0.609 sum 23.122 -7.358 0.000 24.264 Atomic orbital electron populations 1.69899 1.06276 1.27190 1.50182 1.24934 0.94771 0.99196 0.94117 0.86747 0.80488 0.83214 0.78771 1.20054 1.21202 1.18633 1.20842 0.88228 0.95064 1.52353 0.90619 1.19624 0.96910 0.89967 0.98090 1.23519 0.71834 1.01946 1.01995 1.86653 1.26198 1.30066 1.81854 1.20443 0.86998 0.83064 0.74210 1.90902 1.65636 1.36267 1.45129 1.20490 0.92914 0.88486 1.05114 1.67841 1.08358 1.28405 1.06811 1.23073 0.89300 0.98824 0.96364 1.22412 1.02314 0.92171 0.96705 1.21702 0.91225 1.01244 1.00534 1.18662 0.90064 0.82516 0.99713 1.91645 1.76922 1.47034 1.92582 0.92455 0.95218 0.95660 0.91441 0.91423 0.80887 0.82912 0.82494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.67 13.96 55.43 0.77 -26.90 15 2 C 0.07 2.11 5.47 -17.82 -0.10 2.01 15 3 Si 0.88 21.77 27.47 -169.99 -4.67 17.10 15 4 H -0.27 -6.65 7.11 56.52 0.40 -6.25 15 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 15 6 H -0.26 -6.26 6.54 56.52 0.37 -5.89 15 7 C -0.53 -15.24 9.66 -34.44 -0.33 -15.57 15 8 H 0.08 2.33 7.99 -52.49 -0.42 1.91 15 9 C -0.01 -0.21 4.42 -27.88 -0.12 -0.33 15 10 C 0.08 1.77 5.41 37.16 0.20 1.97 15 11 O -0.33 -6.91 10.04 -40.50 -0.41 -7.31 15 12 C 0.51 9.70 7.94 34.68 0.28 9.97 15 13 O -0.49 -10.21 15.11 -19.23 -0.29 -10.50 15 14 C 0.07 1.02 6.75 -82.97 -0.56 0.46 15 15 N -0.40 -5.54 10.12 -9.77 -0.10 -5.63 15 16 C 0.09 0.73 11.18 -17.56 -0.20 0.54 15 17 C -0.12 -0.71 10.11 -39.33 -0.40 -1.10 15 18 C -0.12 -0.94 10.16 -39.23 -0.40 -1.34 15 19 C 0.11 1.40 7.32 -38.80 -0.28 1.12 15 20 F -0.10 -1.48 15.55 2.25 0.04 -1.45 15 21 H 0.27 7.62 8.31 -40.82 -0.34 7.28 15 22 H 0.03 0.74 7.20 -51.93 -0.37 0.36 15 23 H 0.03 0.62 7.57 -51.93 -0.39 0.22 15 24 H 0.07 1.49 8.14 -51.93 -0.42 1.07 15 25 H 0.07 1.50 8.14 -51.93 -0.42 1.07 15 26 H 0.17 0.90 8.06 -52.49 -0.42 0.48 15 27 H 0.15 0.32 8.06 -52.49 -0.42 -0.11 15 28 H 0.16 0.73 8.06 -52.49 -0.42 0.31 15 LS Contribution 262.93 15.07 3.96 3.96 Total: -1.00 -34.01 262.93 -5.07 -39.09 By element: Atomic # 1 Polarization: -3.63 SS G_CDS: -2.47 Total: -6.10 kcal Atomic # 6 Polarization: -0.35 SS G_CDS: -1.91 Total: -2.26 kcal Atomic # 7 Polarization: -33.21 SS G_CDS: 0.67 Total: -32.53 kcal Atomic # 8 Polarization: -17.11 SS G_CDS: -0.70 Total: -17.81 kcal Atomic # 9 Polarization: -1.48 SS G_CDS: 0.04 Total: -1.45 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.67 Total: 17.10 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -34.01 -5.07 -39.09 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850132333.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.008 kcal (2) G-P(sol) polarization free energy of solvation -34.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds