Wall clock time and date at job start Sun Mar 29 2020 21:56:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 120.00116 * 2 1 4 4 H 1.48501 * 109.47256 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.46888 * 299.99646 * 3 2 1 6 6 H 1.48495 * 109.47243 * 59.99578 * 3 2 1 7 7 C 1.37881 * 119.99764 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99682 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00085 * 359.97438 * 7 2 1 10 10 N 1.46502 * 109.46745 * 180.02562 * 9 7 2 11 11 C 1.39193 * 119.99533 * 180.02562 * 10 9 7 12 12 C 1.39645 * 120.83685 * 0.02562 * 11 10 9 13 13 C 1.37752 * 119.19397 * 179.97438 * 12 11 10 14 14 N 1.32080 * 120.91210 * 359.97438 * 13 12 11 15 15 C 1.32376 * 121.83166 * 359.70733 * 14 13 12 16 16 O 1.35685 * 119.64535 * 180.31593 * 15 14 13 17 17 C 1.38608 * 120.70637 * 0.57999 * 15 14 13 18 18 N 1.48029 * 120.48636 * 179.70986 * 17 15 14 19 19 O 1.21803 * 119.99705 * 269.72309 * 18 17 15 20 20 O 1.21799 * 120.00092 * 89.45206 * 18 17 15 21 21 H 0.96998 * 120.00198 * 0.02562 * 1 2 3 22 22 H 1.08997 * 109.46908 * 60.00308 * 9 7 2 23 23 H 1.08998 * 109.47584 * 300.00097 * 9 7 2 24 24 H 0.97000 * 120.00321 * 0.02562 * 10 9 7 25 25 H 1.07998 * 120.39880 * 0.02562 * 12 11 10 26 26 H 1.07994 * 119.54263 * 179.97438 * 13 12 11 27 27 H 0.96701 * 113.99901 * 270.26197 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 7 2.2030 -3.6127 0.0027 11 6 1.7390 -4.9250 0.0033 12 6 0.3699 -5.2001 0.0025 13 6 -0.0519 -6.5114 0.0026 14 7 0.8191 -7.5044 0.0030 15 6 2.1250 -7.2876 -0.0024 16 8 2.9802 -8.3410 -0.0083 17 6 2.6281 -5.9960 0.0032 18 7 4.0893 -5.7593 0.0035 19 8 4.6902 -5.6617 1.0586 20 8 4.6916 -5.6670 -1.0511 21 1 -0.4850 0.8400 -0.0004 22 1 0.6241 -2.5575 -0.8880 23 1 0.6246 -2.5564 0.8919 24 1 3.1567 -3.4354 0.0029 25 1 -0.3494 -4.3945 0.0009 26 1 -1.1093 -6.7307 0.0024 27 1 3.2289 -8.6506 0.8734 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000853545186.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:41 Heat of formation + Delta-G solvation = -10.055073 kcal Electronic energy + Delta-G solvation = -16594.515229 eV Core-core repulsion = 13549.077328 eV Total energy + Delta-G solvation = -3045.437900 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.074 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.03130 -40.29992 -37.78035 -36.22759 -35.99700 -33.23425 -31.50288 -30.35381 -27.40414 -26.23731 -23.82953 -22.74961 -21.90129 -19.31699 -18.82418 -18.55029 -18.28223 -16.98266 -16.37030 -15.97644 -15.16696 -15.00588 -14.51627 -14.04689 -13.86013 -12.93577 -12.70685 -12.25435 -12.05526 -11.44235 -11.23387 -11.14229 -11.03474 -10.89019 -10.72117 -10.48236 -9.74169 -9.70225 -9.38757 -8.86744 -7.77645 -6.47079 -4.54909 0.62784 0.76748 1.27657 1.63246 3.09623 3.11388 3.18306 3.22824 3.46877 3.66511 4.14552 4.48119 4.71556 4.91644 4.97195 5.09515 5.56565 5.76740 6.18946 6.43875 6.58057 6.92118 7.13285 7.17243 7.41018 7.56900 7.72635 7.83992 7.92500 8.49844 9.13512 10.63109 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.032346 B = 0.006592 C = 0.005625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.427378 B = 4246.842253 C = 4976.363615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.069 3.931 3 Si 0.909 3.091 4 H -0.270 1.270 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.551 4.551 8 H 0.066 0.934 9 C 0.241 3.759 10 N -0.689 5.689 11 C 0.316 3.684 12 C -0.246 4.246 13 C 0.181 3.819 14 N -0.538 5.538 15 C 0.406 3.594 16 O -0.479 6.479 17 C -0.203 4.203 18 N 0.038 4.962 19 O -0.152 6.152 20 O -0.140 6.140 21 H 0.269 0.731 22 H 0.036 0.964 23 H 0.036 0.964 24 H 0.400 0.600 25 H 0.161 0.839 26 H 0.174 0.826 27 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.247 -10.227 1.675 10.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.135 4.135 3 Si 0.736 3.264 4 H -0.194 1.194 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.588 4.588 8 H 0.084 0.916 9 C 0.122 3.878 10 N -0.306 5.306 11 C 0.191 3.809 12 C -0.272 4.272 13 C 0.029 3.971 14 N -0.263 5.263 15 C 0.223 3.777 16 O -0.287 6.287 17 C -0.296 4.296 18 N 0.566 4.434 19 O -0.373 6.373 20 O -0.364 6.364 21 H 0.079 0.921 22 H 0.054 0.946 23 H 0.054 0.946 24 H 0.234 0.766 25 H 0.178 0.822 26 H 0.191 0.809 27 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -1.129 -10.748 1.101 10.863 hybrid contribution 1.478 1.807 0.444 2.376 sum 0.349 -8.940 1.544 9.079 Atomic orbital electron populations 1.69919 1.06132 1.27884 1.48275 1.24907 0.95022 0.99690 0.93925 0.86251 0.80014 0.82162 0.78004 1.19392 1.20478 1.20492 1.21121 0.93589 0.89803 1.54332 0.91564 1.19548 0.88345 0.82002 0.97951 1.46042 1.11392 1.02377 1.70773 1.17760 0.92031 0.84589 0.86537 1.21804 0.92967 0.99636 1.12797 1.22483 0.99158 0.86844 0.88573 1.67567 1.00186 1.36360 1.22208 1.18268 0.87051 0.82421 0.89915 1.84777 1.61441 1.48021 1.34497 1.21504 0.79859 0.95812 1.32454 1.43167 1.02900 0.97239 1.00065 1.94525 1.69056 1.52758 1.20920 1.94547 1.68851 1.52007 1.20961 0.92085 0.94579 0.94590 0.76568 0.82178 0.80908 0.73194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.63 13.29 55.43 0.74 -22.89 15 2 C 0.07 1.79 5.46 -17.82 -0.10 1.69 15 3 Si 0.91 20.00 29.54 -169.99 -5.02 14.98 15 4 H -0.27 -5.90 7.11 56.52 0.40 -5.50 15 5 H -0.28 -6.09 7.11 56.52 0.40 -5.69 15 6 H -0.28 -6.08 7.11 56.52 0.40 -5.68 15 7 C -0.55 -14.05 9.28 -34.44 -0.32 -14.37 15 8 H 0.07 1.68 7.60 -52.48 -0.40 1.28 15 9 C 0.24 5.52 4.70 -5.19 -0.02 5.49 15 10 N -0.69 -13.86 5.71 -59.66 -0.34 -14.20 15 11 C 0.32 5.65 6.69 -83.63 -0.56 5.09 15 12 C -0.25 -3.73 9.38 -39.23 -0.37 -4.10 15 13 C 0.18 2.35 11.17 -17.62 -0.20 2.15 15 14 N -0.54 -8.01 10.39 -13.43 -0.14 -8.15 15 15 C 0.41 6.41 7.74 -17.18 -0.13 6.28 15 16 O -0.48 -6.64 13.32 -18.76 -0.25 -6.89 15 17 C -0.20 -3.55 6.22 -79.45 -0.49 -4.05 15 18 N 0.04 0.69 3.36 34.21 0.11 0.81 15 19 O -0.15 -2.79 19.26 -29.46 -0.57 -3.36 15 20 O -0.14 -2.70 19.26 -29.46 -0.57 -3.27 15 21 H 0.27 6.77 8.31 -40.82 -0.34 6.43 15 22 H 0.04 0.86 7.99 -51.93 -0.41 0.45 15 23 H 0.04 0.86 8.00 -51.93 -0.42 0.44 15 24 H 0.40 8.18 7.68 -40.82 -0.31 7.86 15 25 H 0.16 2.35 6.89 -52.49 -0.36 1.99 15 26 H 0.17 1.53 8.06 -52.49 -0.42 1.11 15 27 H 0.41 3.58 9.06 45.56 0.41 3.99 15 LS Contribution 259.63 15.07 3.91 3.91 Total: -1.00 -28.83 259.63 -5.36 -34.19 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: -1.05 Total: 6.69 kcal Atomic # 6 Polarization: 0.37 SS G_CDS: -2.19 Total: -1.82 kcal Atomic # 7 Polarization: -44.80 SS G_CDS: 0.37 Total: -44.43 kcal Atomic # 8 Polarization: -12.14 SS G_CDS: -1.38 Total: -13.52 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.02 Total: 14.98 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -28.83 -5.36 -34.19 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853545186.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.137 kcal (2) G-P(sol) polarization free energy of solvation -28.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds