Wall clock time and date at job start Sun Mar 29 2020 21:56:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 120.00116 * 2 1 4 4 H 1.48501 * 109.47256 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.46888 * 299.99646 * 3 2 1 6 6 H 1.48495 * 109.47243 * 59.99578 * 3 2 1 7 7 C 1.37881 * 119.99764 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99682 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00085 * 359.97438 * 7 2 1 10 10 N 1.46502 * 109.46745 * 180.02562 * 9 7 2 11 11 C 1.39193 * 119.99533 * 180.02562 * 10 9 7 12 12 C 1.39645 * 120.83685 * 0.02562 * 11 10 9 13 13 C 1.37752 * 119.19397 * 179.97438 * 12 11 10 14 14 N 1.32080 * 120.91210 * 359.97438 * 13 12 11 15 15 C 1.32376 * 121.83166 * 359.70733 * 14 13 12 16 16 O 1.35685 * 119.64535 * 180.31593 * 15 14 13 17 17 C 1.38608 * 120.70637 * 0.57999 * 15 14 13 18 18 N 1.48029 * 120.48636 * 179.70986 * 17 15 14 19 19 O 1.21803 * 119.99705 * 269.72309 * 18 17 15 20 20 O 1.21799 * 120.00092 * 89.45206 * 18 17 15 21 21 H 0.96998 * 120.00198 * 0.02562 * 1 2 3 22 22 H 1.08997 * 109.46908 * 60.00308 * 9 7 2 23 23 H 1.08998 * 109.47584 * 300.00097 * 9 7 2 24 24 H 0.97000 * 120.00321 * 0.02562 * 10 9 7 25 25 H 1.07998 * 120.39880 * 0.02562 * 12 11 10 26 26 H 1.07994 * 119.54263 * 179.97438 * 13 12 11 27 27 H 0.96701 * 113.99901 * 270.26197 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 7 2.2030 -3.6127 0.0027 11 6 1.7390 -4.9250 0.0033 12 6 0.3699 -5.2001 0.0025 13 6 -0.0519 -6.5114 0.0026 14 7 0.8191 -7.5044 0.0030 15 6 2.1250 -7.2876 -0.0024 16 8 2.9802 -8.3410 -0.0083 17 6 2.6281 -5.9960 0.0032 18 7 4.0893 -5.7593 0.0035 19 8 4.6902 -5.6617 1.0586 20 8 4.6916 -5.6670 -1.0511 21 1 -0.4850 0.8400 -0.0004 22 1 0.6241 -2.5575 -0.8880 23 1 0.6246 -2.5564 0.8919 24 1 3.1567 -3.4354 0.0029 25 1 -0.3494 -4.3945 0.0009 26 1 -1.1093 -6.7307 0.0024 27 1 3.2289 -8.6506 0.8734 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000853545186.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:41 Heat of formation + Delta-G solvation = -32.643572 kcal Electronic energy + Delta-G solvation = -16595.494740 eV Core-core repulsion = 13549.077328 eV Total energy + Delta-G solvation = -3046.417411 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.074 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -43.44228 -41.57649 -39.02425 -37.69031 -37.39213 -35.05829 -32.96311 -31.66156 -29.12781 -27.61411 -25.48229 -24.07515 -23.38072 -20.70981 -20.10940 -19.99774 -19.68659 -18.59625 -17.75833 -17.41211 -16.74834 -16.46537 -15.83752 -15.52791 -15.31688 -14.44038 -14.22250 -13.78686 -13.21294 -12.95074 -12.94053 -12.90177 -12.50056 -12.38040 -12.29841 -12.23632 -11.59279 -10.96212 -10.83053 -10.57193 -9.26433 -8.42562 -6.56463 -0.70707 -0.58487 -0.01765 0.24713 1.36628 1.39060 1.50262 1.85622 2.18478 2.31595 2.40478 2.94347 3.25027 3.44908 3.72510 3.96536 4.35303 4.56658 4.77218 4.99683 5.06771 5.16124 5.36353 5.65052 5.79563 6.16014 6.23172 6.35671 6.54485 6.56767 7.15618 8.68250 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.032346 B = 0.006592 C = 0.005625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.427378 B = 4246.842253 C = 4976.363615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.024 3.976 3 Si 0.971 3.029 4 H -0.269 1.269 5 H -0.274 1.274 6 H -0.273 1.273 7 C -0.571 4.571 8 H 0.061 0.939 9 C 0.261 3.739 10 N -0.704 5.704 11 C 0.299 3.701 12 C -0.251 4.251 13 C 0.203 3.797 14 N -0.536 5.536 15 C 0.411 3.589 16 O -0.484 6.484 17 C -0.215 4.215 18 N 0.040 4.960 19 O -0.143 6.143 20 O -0.169 6.169 21 H 0.273 0.727 22 H 0.021 0.979 23 H 0.024 0.976 24 H 0.394 0.606 25 H 0.164 0.836 26 H 0.223 0.777 27 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.386 -11.030 1.978 11.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.178 4.178 3 Si 0.795 3.205 4 H -0.193 1.193 5 H -0.199 1.199 6 H -0.198 1.198 7 C -0.608 4.608 8 H 0.079 0.921 9 C 0.140 3.860 10 N -0.323 5.323 11 C 0.177 3.823 12 C -0.277 4.277 13 C 0.052 3.948 14 N -0.260 5.260 15 C 0.228 3.772 16 O -0.295 6.295 17 C -0.307 4.307 18 N 0.567 4.433 19 O -0.368 6.368 20 O -0.387 6.387 21 H 0.083 0.917 22 H 0.039 0.961 23 H 0.042 0.958 24 H 0.228 0.772 25 H 0.181 0.819 26 H 0.240 0.760 27 H 0.294 0.706 Dipole moment (debyes) X Y Z Total from point charges -1.747 -11.610 1.365 11.820 hybrid contribution 1.627 1.883 0.405 2.521 sum -0.121 -9.728 1.770 9.888 Atomic orbital electron populations 1.69994 1.07287 1.28855 1.48931 1.25701 0.95829 1.02779 0.93480 0.85302 0.78672 0.78306 0.78201 1.19345 1.19944 1.19844 1.21458 0.93692 0.91326 1.54361 0.92058 1.19070 0.88154 0.82209 0.96523 1.45694 1.10444 1.02779 1.73379 1.18077 0.93299 0.83669 0.87261 1.22007 0.91771 1.00948 1.12935 1.23237 1.00968 0.85331 0.85248 1.67775 0.99745 1.36649 1.21855 1.18403 0.87606 0.82185 0.88980 1.84731 1.61174 1.47130 1.36493 1.21718 0.78871 0.96561 1.33589 1.43335 1.03433 0.96734 0.99773 1.94499 1.69528 1.51918 1.20888 1.94546 1.69443 1.53485 1.21205 0.91741 0.96069 0.95836 0.77197 0.81897 0.76043 0.70595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.91 13.29 21.45 0.28 -48.63 15 2 C 0.02 1.24 5.46 84.66 0.46 1.70 15 3 Si 0.97 40.88 29.54 68.60 2.03 42.91 15 4 H -0.27 -11.20 7.11 99.48 0.71 -10.49 15 5 H -0.27 -11.25 7.11 99.48 0.71 -10.54 15 6 H -0.27 -11.16 7.11 99.48 0.71 -10.46 15 7 C -0.57 -29.55 9.28 25.60 0.24 -29.31 15 8 H 0.06 3.16 7.60 -2.91 -0.02 3.13 15 9 C 0.26 12.20 4.70 85.63 0.40 12.61 15 10 N -0.70 -28.81 5.71 -342.67 -1.96 -30.77 15 11 C 0.30 10.55 6.69 38.54 0.26 10.81 15 12 C -0.25 -7.21 9.38 22.49 0.21 -7.00 15 13 C 0.20 4.59 11.17 84.54 0.94 5.53 15 14 N -0.54 -14.26 10.39 -309.19 -3.21 -17.47 15 15 C 0.41 12.14 7.74 84.70 0.66 12.79 15 16 O -0.48 -12.36 13.32 -90.04 -1.20 -13.56 15 17 C -0.22 -7.33 6.22 36.69 0.23 -7.10 15 18 N 0.04 1.47 3.36 -45.69 -0.15 1.32 15 19 O -0.14 -5.19 19.26 18.88 0.36 -4.82 15 20 O -0.17 -6.61 19.26 18.89 0.36 -6.24 15 21 H 0.27 13.71 8.31 -92.71 -0.77 12.94 15 22 H 0.02 1.05 7.99 -2.39 -0.02 1.03 15 23 H 0.02 1.15 8.00 -2.39 -0.02 1.13 15 24 H 0.39 16.59 7.68 -92.71 -0.71 15.88 15 25 H 0.16 4.62 6.89 -2.91 -0.02 4.60 15 26 H 0.22 2.78 8.06 -2.91 -0.02 2.76 15 27 H 0.43 6.50 9.06 -74.06 -0.67 5.83 15 Total: -1.00 -61.21 259.63 -0.22 -61.43 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: -0.14 Total: 15.80 kcal Atomic # 6 Polarization: -3.37 SS G_CDS: 3.40 Total: 0.03 kcal Atomic # 7 Polarization: -90.51 SS G_CDS: -5.03 Total: -95.55 kcal Atomic # 8 Polarization: -24.16 SS G_CDS: -0.47 Total: -24.63 kcal Atomic # 14 Polarization: 40.88 SS G_CDS: 2.03 Total: 42.91 kcal Total: -61.21 -0.22 -61.43 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853545186.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.788 kcal (2) G-P(sol) polarization free energy of solvation -61.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds