Wall clock time and date at job start Sun Mar 29 2020 22:28:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.29412 * 125.69868 * 2 1 4 4 N 1.26398 * 116.47270 * 179.97438 * 3 2 1 5 5 C 1.29414 * 116.48143 * 359.97438 * 4 3 2 6 6 C 1.50696 * 125.70184 * 180.02562 * 5 4 3 7 7 N 1.46902 * 109.47183 * 89.97291 * 6 5 4 8 8 C 1.47473 * 111.00535 * 265.97474 * 7 6 5 9 9 C 1.53511 * 87.93375 * 221.29757 * 8 7 6 10 10 C 1.50705 * 114.34403 * 139.68424 * 9 8 7 11 11 H 1.08003 * 119.99778 * 266.07870 * 10 9 8 12 12 C 1.37870 * 119.99965 * 86.07217 * 10 9 8 13 13 N 1.31518 * 120.00444 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 120.00039 * 180.02562 * 12 10 9 15 15 H 1.48509 * 109.46997 * 0.02562 * 14 12 10 16 16 H 1.48498 * 109.47505 * 120.00044 * 14 12 10 17 17 H 1.48496 * 109.47285 * 240.00374 * 14 12 10 18 18 C 1.47475 * 111.00050 * 170.00084 * 7 6 5 19 19 S 1.71218 * 108.60223 * 0.02562 * 5 4 3 20 20 H 1.08994 * 109.47204 * 270.04553 * 1 2 3 21 21 H 1.09003 * 109.46671 * 30.04162 * 1 2 3 22 22 H 1.08996 * 109.47691 * 150.04102 * 1 2 3 23 23 H 1.08995 * 109.47114 * 209.97822 * 6 5 4 24 24 H 1.09004 * 109.46769 * 329.97778 * 6 5 4 25 25 H 1.09004 * 113.47706 * 336.06274 * 8 7 6 26 26 H 1.09001 * 113.47886 * 106.52390 * 8 7 6 27 27 H 1.09000 * 114.16537 * 272.37491 * 9 8 7 28 28 H 0.96995 * 120.00108 * 180.02562 * 13 12 10 29 29 H 1.09000 * 113.47857 * 253.47685 * 18 7 6 30 30 H 1.09005 * 113.47513 * 23.87927 * 18 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2621 1.0510 0.0000 4 7 3.5097 0.8483 0.0005 5 6 3.8936 -0.3876 0.0015 6 6 5.3232 -0.8644 0.0028 7 7 5.7869 -1.0180 1.3882 8 6 6.4748 0.2007 1.8535 9 6 7.5133 -0.7088 2.5250 10 6 8.9352 -0.2252 2.4012 11 1 9.5588 -0.5824 1.5950 12 6 9.4399 0.6734 3.3170 13 7 8.6807 1.1081 4.2990 14 14 11.2022 1.2734 3.1631 15 1 11.8398 0.6389 1.9815 16 1 11.2100 2.7490 2.9964 17 1 11.9578 0.9097 4.3887 18 6 7.0910 -1.7049 1.4360 19 16 2.5060 -1.3905 0.0011 20 1 -0.3633 0.0008 1.0276 21 1 -0.3633 0.8897 -0.5145 22 1 -0.3634 -0.8903 -0.5132 23 1 5.3865 -1.8241 -0.5101 24 1 5.9497 -0.1355 -0.5114 25 1 6.8850 0.8039 1.0436 26 1 5.8886 0.7869 2.5612 27 1 7.2496 -1.0158 3.5371 28 1 9.0357 1.7405 4.9430 29 1 7.0271 -2.7339 1.7898 30 1 7.6652 -1.6112 0.5141 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000864051244.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:28:42 Heat of formation + Delta-G solvation = 95.842663 kcal Electronic energy + Delta-G solvation = -14383.733746 eV Core-core repulsion = 11921.473881 eV Total energy + Delta-G solvation = -2462.259864 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.079 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.13122 -38.98681 -33.70358 -32.61336 -30.92546 -28.10679 -26.08014 -24.84310 -24.51536 -22.42442 -19.60123 -19.15558 -18.65321 -16.71935 -15.83203 -15.31899 -14.86659 -14.34822 -14.24895 -13.98920 -13.36582 -13.12886 -12.91471 -12.51407 -12.01129 -11.84426 -11.31108 -11.01309 -10.70336 -10.43359 -10.36746 -10.01426 -9.90632 -9.66485 -9.56516 -9.13064 -8.99917 -8.46685 -8.17305 -6.07110 -4.12380 0.55447 1.01480 1.49306 2.70678 3.27910 3.36329 3.39195 4.04412 4.38788 4.56015 4.86614 5.01626 5.08255 5.20617 5.24876 5.47890 5.61838 5.68305 5.77553 5.98063 6.22219 6.40672 6.58847 6.60652 7.03713 7.14038 7.68306 7.81917 7.95521 8.32790 8.71720 8.91076 9.53271 11.02580 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.053782 B = 0.005025 C = 0.004837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 520.500094 B = 5570.592062 C = 5787.897181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.035 4.035 3 N -0.262 5.262 4 N -0.259 5.259 5 C 0.021 3.979 6 C 0.093 3.907 7 N -0.483 5.483 8 C 0.010 3.990 9 C 0.042 3.958 10 C -0.518 4.518 11 H 0.059 0.941 12 C 0.067 3.933 13 N -0.885 5.885 14 Si 0.892 3.108 15 H -0.272 1.272 16 H -0.283 1.283 17 H -0.283 1.283 18 C -0.002 4.002 19 S 0.166 5.834 20 H 0.088 0.912 21 H 0.090 0.910 22 H 0.081 0.919 23 H 0.089 0.911 24 H 0.078 0.922 25 H 0.059 0.941 26 H 0.064 0.936 27 H 0.065 0.935 28 H 0.262 0.738 29 H 0.067 0.933 30 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.132 -6.252 -9.049 17.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.314 4.314 3 N -0.100 5.100 4 N -0.096 5.096 5 C -0.259 4.259 6 C -0.039 4.039 7 N -0.206 5.206 8 C -0.119 4.119 9 C 0.023 3.977 10 C -0.556 4.556 11 H 0.078 0.922 12 C -0.136 4.136 13 N -0.522 5.522 14 Si 0.719 3.281 15 H -0.197 1.197 16 H -0.209 1.209 17 H -0.209 1.209 18 C -0.131 4.131 19 S 0.409 5.591 20 H 0.106 0.894 21 H 0.109 0.891 22 H 0.100 0.900 23 H 0.107 0.893 24 H 0.096 0.904 25 H 0.078 0.922 26 H 0.082 0.918 27 H 0.083 0.917 28 H 0.072 0.928 29 H 0.085 0.915 30 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -13.680 -6.034 -8.570 17.233 hybrid contribution 1.500 0.917 -0.529 1.836 sum -12.180 -5.117 -9.099 16.041 Atomic orbital electron populations 1.20309 0.84295 1.04250 1.04133 1.29147 1.04089 0.92291 1.05922 1.71428 0.97177 1.27000 1.14433 1.71439 1.06039 1.17238 1.14916 1.29180 1.02882 0.91935 1.01906 1.21212 0.86454 1.00806 0.95463 1.68922 1.23850 1.13869 1.14003 1.24165 0.95842 0.92626 0.99222 1.20112 0.93856 0.89880 0.93879 1.21037 0.96507 1.25994 1.12058 0.92231 1.25024 0.97586 0.96109 0.94855 1.69977 1.36054 1.31473 1.14666 0.86546 0.84812 0.78634 0.78075 1.19678 1.20950 1.20891 1.24057 0.88371 0.99541 1.01103 1.83512 0.98070 1.12047 1.65476 0.89353 0.89136 0.89991 0.89286 0.90420 0.92239 0.91751 0.91685 0.92835 0.91502 0.92296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.57 10.48 36.00 0.38 -0.20 16 2 C -0.04 -0.47 7.53 -13.30 -0.10 -0.57 16 3 N -0.26 -4.56 11.66 32.58 0.38 -4.18 16 4 N -0.26 -4.94 11.66 32.58 0.38 -4.56 16 5 C 0.02 0.34 7.12 -13.30 -0.09 0.25 16 6 C 0.09 1.55 5.41 -4.98 -0.03 1.52 16 7 N -0.48 -9.62 6.32 -246.13 -1.55 -11.18 16 8 C 0.01 0.24 7.28 -7.56 -0.06 0.18 16 9 C 0.04 1.04 3.76 -91.24 -0.34 0.69 16 10 C -0.52 -13.93 8.83 -34.44 -0.30 -14.23 16 11 H 0.06 1.56 7.81 -52.48 -0.41 1.15 16 12 C 0.07 1.86 5.46 -17.82 -0.10 1.76 16 13 N -0.88 -25.68 13.26 55.43 0.74 -24.95 16 14 Si 0.89 21.02 29.54 -169.99 -5.02 16.00 16 15 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 16 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 17 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 18 C 0.00 -0.05 7.24 -7.56 -0.05 -0.10 16 19 S 0.17 2.11 23.04 -107.50 -2.48 -0.36 16 20 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 21 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 22 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 23 H 0.09 1.22 8.08 -51.93 -0.42 0.80 16 24 H 0.08 1.33 7.30 -51.93 -0.38 0.95 16 25 H 0.06 1.41 7.38 -51.93 -0.38 1.02 16 26 H 0.06 1.63 8.14 -51.93 -0.42 1.21 16 27 H 0.07 1.77 8.11 -51.93 -0.42 1.35 16 28 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 29 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.06 1.12 7.87 -51.93 -0.41 0.71 16 LS Contribution 275.48 15.07 4.15 4.15 Total: -1.00 -30.93 275.48 -7.77 -38.71 By element: Atomic # 1 Polarization: 0.73 SS G_CDS: -3.67 Total: -2.94 kcal Atomic # 6 Polarization: -9.99 SS G_CDS: -0.70 Total: -10.68 kcal Atomic # 7 Polarization: -44.81 SS G_CDS: -0.06 Total: -44.87 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Atomic # 16 Polarization: 2.11 SS G_CDS: -2.48 Total: -0.36 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -30.93 -7.77 -38.71 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000864051244.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.549 kcal (2) G-P(sol) polarization free energy of solvation -30.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.707 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds