Wall clock time and date at job start Sun Mar 29 2020 22:28:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.29412 * 125.69868 * 2 1 4 4 N 1.26398 * 116.47270 * 179.97438 * 3 2 1 5 5 C 1.29414 * 116.48143 * 359.97438 * 4 3 2 6 6 C 1.50696 * 125.70184 * 180.02562 * 5 4 3 7 7 N 1.46902 * 109.47183 * 89.97291 * 6 5 4 8 8 C 1.47473 * 111.00535 * 265.97474 * 7 6 5 9 9 C 1.53511 * 87.93375 * 221.29757 * 8 7 6 10 10 C 1.50705 * 114.34403 * 139.68424 * 9 8 7 11 11 H 1.08003 * 119.99778 * 266.07870 * 10 9 8 12 12 C 1.37870 * 119.99965 * 86.07217 * 10 9 8 13 13 N 1.31518 * 120.00444 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 120.00039 * 180.02562 * 12 10 9 15 15 H 1.48509 * 109.46997 * 0.02562 * 14 12 10 16 16 H 1.48498 * 109.47505 * 120.00044 * 14 12 10 17 17 H 1.48496 * 109.47285 * 240.00374 * 14 12 10 18 18 C 1.47475 * 111.00050 * 170.00084 * 7 6 5 19 19 S 1.71218 * 108.60223 * 0.02562 * 5 4 3 20 20 H 1.08994 * 109.47204 * 270.04553 * 1 2 3 21 21 H 1.09003 * 109.46671 * 30.04162 * 1 2 3 22 22 H 1.08996 * 109.47691 * 150.04102 * 1 2 3 23 23 H 1.08995 * 109.47114 * 209.97822 * 6 5 4 24 24 H 1.09004 * 109.46769 * 329.97778 * 6 5 4 25 25 H 1.09004 * 113.47706 * 336.06274 * 8 7 6 26 26 H 1.09001 * 113.47886 * 106.52390 * 8 7 6 27 27 H 1.09000 * 114.16537 * 272.37491 * 9 8 7 28 28 H 0.96995 * 120.00108 * 180.02562 * 13 12 10 29 29 H 1.09000 * 113.47857 * 253.47685 * 18 7 6 30 30 H 1.09005 * 113.47513 * 23.87927 * 18 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2621 1.0510 0.0000 4 7 3.5097 0.8483 0.0005 5 6 3.8936 -0.3876 0.0015 6 6 5.3232 -0.8644 0.0028 7 7 5.7869 -1.0180 1.3882 8 6 6.4748 0.2007 1.8535 9 6 7.5133 -0.7088 2.5250 10 6 8.9352 -0.2252 2.4012 11 1 9.5588 -0.5824 1.5950 12 6 9.4399 0.6734 3.3170 13 7 8.6807 1.1081 4.2990 14 14 11.2022 1.2734 3.1631 15 1 11.8398 0.6389 1.9815 16 1 11.2100 2.7490 2.9964 17 1 11.9578 0.9097 4.3887 18 6 7.0910 -1.7049 1.4360 19 16 2.5060 -1.3905 0.0011 20 1 -0.3633 0.0008 1.0276 21 1 -0.3633 0.8897 -0.5145 22 1 -0.3634 -0.8903 -0.5132 23 1 5.3865 -1.8241 -0.5101 24 1 5.9497 -0.1355 -0.5114 25 1 6.8850 0.8039 1.0436 26 1 5.8886 0.7869 2.5612 27 1 7.2496 -1.0158 3.5371 28 1 9.0357 1.7405 4.9430 29 1 7.0271 -2.7339 1.7898 30 1 7.6652 -1.6112 0.5141 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000864051244.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:28:41 Heat of formation + Delta-G solvation = 72.478734 kcal Electronic energy + Delta-G solvation = -14384.746882 eV Core-core repulsion = 11921.473881 eV Total energy + Delta-G solvation = -2463.273000 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.079 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.33454 -40.68337 -35.14575 -34.29801 -32.23907 -29.55065 -27.63716 -26.58589 -25.88165 -24.00585 -20.81364 -20.54902 -20.23272 -18.66706 -17.14128 -16.79587 -16.51302 -16.02019 -15.72806 -15.42371 -14.47066 -14.12921 -14.05092 -13.77144 -13.59868 -13.33229 -13.09908 -12.88713 -12.45307 -12.22125 -11.84617 -11.42791 -11.33104 -11.14397 -10.94396 -10.63771 -10.58977 -10.49643 -9.85872 -8.16555 -6.28285 -0.54972 -0.03977 0.37066 1.41822 1.43552 1.50210 1.55216 2.41946 2.92367 3.13139 3.32692 3.65636 3.75338 4.12881 4.16707 4.41083 4.45316 4.49557 4.62591 4.64872 4.76015 4.77402 4.93760 5.06975 5.18517 5.34028 5.60943 5.82347 6.19010 6.28064 6.82686 7.41194 7.55598 8.93761 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.053782 B = 0.005025 C = 0.004837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 520.500094 B = 5570.592062 C = 5787.897181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.030 4.030 3 N -0.308 5.308 4 N -0.301 5.301 5 C -0.018 4.018 6 C 0.095 3.905 7 N -0.480 5.480 8 C 0.022 3.978 9 C 0.020 3.980 10 C -0.528 4.528 11 H 0.066 0.934 12 C 0.012 3.988 13 N -0.925 5.925 14 Si 0.959 3.041 15 H -0.259 1.259 16 H -0.285 1.285 17 H -0.279 1.279 18 C 0.018 3.982 19 S 0.245 5.755 20 H 0.103 0.897 21 H 0.097 0.903 22 H 0.114 0.886 23 H 0.127 0.873 24 H 0.069 0.931 25 H 0.052 0.948 26 H 0.030 0.970 27 H 0.031 0.969 28 H 0.262 0.738 29 H 0.088 0.912 30 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.939 -8.003 -10.531 19.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.309 4.309 3 N -0.146 5.146 4 N -0.139 5.139 5 C -0.297 4.297 6 C -0.037 4.037 7 N -0.203 5.203 8 C -0.107 4.107 9 C 0.001 3.999 10 C -0.566 4.566 11 H 0.084 0.916 12 C -0.187 4.187 13 N -0.564 5.564 14 Si 0.784 3.216 15 H -0.183 1.183 16 H -0.211 1.211 17 H -0.205 1.205 18 C -0.111 4.111 19 S 0.489 5.511 20 H 0.122 0.878 21 H 0.115 0.885 22 H 0.133 0.867 23 H 0.144 0.856 24 H 0.087 0.913 25 H 0.070 0.930 26 H 0.049 0.951 27 H 0.049 0.951 28 H 0.071 0.929 29 H 0.107 0.893 30 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -14.490 -7.810 -10.069 19.296 hybrid contribution 1.580 1.383 -0.086 2.102 sum -12.911 -6.426 -10.155 17.638 Atomic orbital electron populations 1.20632 0.80782 1.06228 1.05640 1.30016 1.06194 0.92024 1.02663 1.71394 0.97069 1.28940 1.17205 1.71388 1.07404 1.19156 1.15938 1.29162 1.04315 0.92767 1.03489 1.21242 0.86658 1.02552 0.93271 1.68779 1.23416 1.11352 1.16791 1.23835 0.95363 0.93195 0.98311 1.20068 0.93464 0.92591 0.93770 1.21429 0.97603 1.25600 1.11939 0.91559 1.25880 1.01771 0.96448 0.94615 1.70117 1.38075 1.32478 1.15762 0.85487 0.79819 0.77798 0.78452 1.18300 1.21091 1.20497 1.23874 0.88059 0.99384 0.99741 1.83103 0.94822 1.09569 1.63593 0.87827 0.88474 0.86699 0.85554 0.91316 0.93003 0.95132 0.95088 0.92938 0.89322 0.90718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.96 10.48 71.23 0.75 -0.22 16 2 C -0.03 -0.74 7.53 88.46 0.67 -0.07 16 3 N -0.31 -10.64 11.66 -50.85 -0.59 -11.23 16 4 N -0.30 -11.59 11.66 -50.85 -0.59 -12.19 16 5 C -0.02 -0.57 7.12 88.46 0.63 0.06 16 6 C 0.09 3.03 5.41 85.56 0.46 3.49 16 7 N -0.48 -18.87 6.32 -932.63 -5.89 -24.76 16 8 C 0.02 1.08 7.28 83.57 0.61 1.69 16 9 C 0.02 1.03 3.76 -11.20 -0.04 0.98 16 10 C -0.53 -28.61 8.83 25.60 0.23 -28.38 16 11 H 0.07 3.42 7.81 -2.91 -0.02 3.40 16 12 C 0.01 0.67 5.46 84.65 0.46 1.13 16 13 N -0.93 -55.44 13.26 21.45 0.28 -55.16 16 14 Si 0.96 43.46 29.54 68.60 2.03 45.48 16 15 H -0.26 -11.08 7.11 99.48 0.71 -10.38 16 16 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 17 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 18 C 0.02 0.68 7.24 83.57 0.61 1.29 16 19 S 0.25 5.57 23.04 -56.49 -1.30 4.27 16 20 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 21 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 22 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 23 H 0.13 3.05 8.08 -2.39 -0.02 3.03 16 24 H 0.07 2.32 7.30 -2.39 -0.02 2.31 16 25 H 0.05 2.54 7.38 -2.38 -0.02 2.52 16 26 H 0.03 1.64 8.14 -2.39 -0.02 1.62 16 27 H 0.03 1.76 8.11 -2.39 -0.02 1.74 16 28 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 29 H 0.09 3.07 8.14 -2.39 -0.02 3.05 16 30 H 0.07 2.67 7.87 -2.38 -0.02 2.65 16 Total: -1.00 -69.74 275.48 -0.56 -70.30 By element: Atomic # 1 Polarization: 2.16 SS G_CDS: 1.14 Total: 3.30 kcal Atomic # 6 Polarization: -24.39 SS G_CDS: 4.37 Total: -20.02 kcal Atomic # 7 Polarization: -96.54 SS G_CDS: -6.79 Total: -103.33 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.48 kcal Atomic # 16 Polarization: 5.57 SS G_CDS: -1.30 Total: 4.27 kcal Total: -69.74 -0.56 -70.30 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000864051244.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.781 kcal (2) G-P(sol) polarization free energy of solvation -69.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.302 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds