Wall clock time and date at job start Sun Mar 29 2020 22:05:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33816 * 124.51986 * 2 1 4 4 C 1.37477 * 115.09687 * 180.02562 * 3 2 1 5 5 C 1.50703 * 123.34954 * 179.97438 * 4 3 2 6 6 C 1.36644 * 113.29926 * 0.23424 * 4 3 2 7 7 C 1.46582 * 125.45827 * 179.74425 * 6 4 3 8 8 O 1.21697 * 120.00245 * 359.97438 * 7 6 4 9 9 N 1.34776 * 119.99781 * 179.97438 * 7 6 4 10 10 C 1.46504 * 119.99812 * 179.97438 * 9 7 6 11 11 C 1.50699 * 109.47038 * 179.97438 * 10 9 7 12 12 H 1.08011 * 120.00355 * 0.02562 * 11 10 9 13 13 C 1.37873 * 120.00219 * 179.97438 * 11 10 9 14 14 N 1.31519 * 119.99935 * 0.02562 * 13 11 10 15 15 Si 1.86806 * 120.00368 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.46575 * 60.00227 * 15 13 11 17 17 H 1.48498 * 109.47194 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.47093 * 300.00215 * 15 13 11 19 19 S 1.70619 * 124.52256 * 180.02562 * 2 1 3 20 20 H 1.09005 * 109.46870 * 89.99852 * 1 2 3 21 21 H 1.09002 * 109.47428 * 210.00095 * 1 2 3 22 22 H 1.09003 * 109.47368 * 330.00270 * 1 2 3 23 23 H 1.07996 * 122.45496 * 0.04065 * 3 2 1 24 24 H 1.09002 * 109.47152 * 90.02652 * 5 4 3 25 25 H 1.09001 * 109.46980 * 330.02752 * 5 4 3 26 26 H 1.09004 * 109.47113 * 210.02733 * 5 4 3 27 27 H 0.97005 * 119.99996 * 359.97438 * 9 7 6 28 28 H 1.08998 * 109.46786 * 299.99577 * 10 9 7 29 29 H 1.08993 * 109.47373 * 60.00045 * 10 9 7 30 30 H 0.96995 * 119.99878 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2653 1.1025 0.0000 4 6 3.6215 0.8775 -0.0006 5 6 4.6450 1.9837 -0.0012 6 6 3.9493 -0.4491 -0.0061 7 6 5.3123 -0.9882 -0.0134 8 8 6.2658 -0.2320 -0.0153 9 7 5.5096 -2.3215 -0.0179 10 6 6.8719 -2.8603 -0.0257 11 6 6.8163 -4.3663 -0.0290 12 1 5.8617 -4.8716 -0.0260 13 6 7.9841 -5.0992 -0.0368 14 7 9.1466 -4.4841 -0.0410 15 14 7.9153 -6.9660 -0.0401 16 1 7.1909 -7.4324 -1.2496 17 1 9.2962 -7.5122 -0.0481 18 1 7.2042 -7.4373 1.1754 19 16 2.4740 -1.4057 -0.0006 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3634 -0.8900 0.5138 22 1 -0.3634 0.8900 0.5138 23 1 1.8429 2.0965 0.0006 24 1 4.8925 2.2503 1.0263 25 1 4.2380 2.8549 -0.5146 26 1 5.5446 1.6461 -0.5158 27 1 4.7495 -2.9242 -0.0161 28 1 7.3945 -2.5138 -0.9172 29 1 7.4029 -2.5187 0.8627 30 1 9.9681 -4.9997 -0.0461 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000867873502.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:51 Heat of formation + Delta-G solvation = -24.122608 kcal Electronic energy + Delta-G solvation = -14264.205185 eV Core-core repulsion = 11764.450485 eV Total energy + Delta-G solvation = -2499.754700 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.22340 -37.65913 -34.23310 -32.60246 -32.34135 -28.62582 -27.86628 -26.33712 -22.85686 -21.95592 -20.53885 -18.85536 -17.43112 -16.44413 -15.48068 -15.02257 -14.76362 -14.47853 -13.96681 -13.92256 -13.19868 -13.03640 -12.93348 -12.60330 -11.98324 -11.87080 -11.77517 -11.55553 -11.45908 -10.98772 -10.87291 -10.70135 -10.30735 -9.42229 -9.13868 -8.75248 -8.52849 -8.28838 -7.88148 -6.16803 -4.23984 0.71015 1.60974 2.02936 2.53757 3.25988 3.30558 3.32192 3.81359 4.05638 4.37526 4.69394 5.07110 5.19344 5.30514 5.32637 5.40170 5.49494 5.71036 5.76693 5.93484 6.07696 6.17955 6.50846 6.71632 7.28733 7.37460 7.49908 7.64582 7.95375 8.56265 8.74946 9.01618 9.42253 10.93398 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.036471 B = 0.005696 C = 0.004949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.541098 B = 4914.283159 C = 5656.068513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.208 4.208 3 C -0.151 4.151 4 C -0.033 4.033 5 C -0.103 4.103 6 C -0.255 4.255 7 C 0.572 3.428 8 O -0.540 6.540 9 N -0.706 5.706 10 C 0.251 3.749 11 C -0.545 4.545 12 H 0.062 0.938 13 C 0.065 3.935 14 N -0.885 5.885 15 Si 0.904 3.096 16 H -0.275 1.275 17 H -0.285 1.285 18 H -0.275 1.275 19 S 0.191 5.809 20 H 0.074 0.926 21 H 0.069 0.931 22 H 0.075 0.925 23 H 0.139 0.861 24 H 0.071 0.929 25 H 0.059 0.941 26 H 0.095 0.905 27 H 0.388 0.612 28 H 0.030 0.970 29 H 0.030 0.970 30 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.426 8.126 0.044 18.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.327 4.327 3 C -0.182 4.182 4 C -0.047 4.047 5 C -0.161 4.161 6 C -0.376 4.376 7 C 0.357 3.643 8 O -0.421 6.421 9 N -0.354 5.354 10 C 0.130 3.870 11 C -0.583 4.583 12 H 0.081 0.919 13 C -0.139 4.139 14 N -0.522 5.522 15 Si 0.731 3.269 16 H -0.200 1.200 17 H -0.210 1.210 18 H -0.200 1.200 19 S 0.460 5.540 20 H 0.093 0.907 21 H 0.088 0.912 22 H 0.094 0.906 23 H 0.157 0.843 24 H 0.090 0.910 25 H 0.078 0.922 26 H 0.114 0.886 27 H 0.220 0.780 28 H 0.048 0.952 29 H 0.048 0.952 30 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -15.820 7.003 0.044 17.301 hybrid contribution -0.125 0.232 0.015 0.264 sum -15.945 7.235 0.059 17.510 Atomic orbital electron populations 1.20340 0.87722 1.03157 1.02774 1.24108 1.01221 0.98159 1.09256 1.19793 0.92251 0.99291 1.06903 1.19443 0.94551 0.93574 0.97169 1.20703 0.98232 0.94337 1.02845 1.24746 0.97487 0.97273 1.18083 1.16990 0.86078 0.83289 0.77980 1.90725 1.41692 1.57903 1.51781 1.46414 1.12048 1.04856 1.72056 1.19162 0.76522 0.93289 0.97998 1.21176 0.93157 0.90494 1.53521 0.91939 1.24937 0.95049 0.99287 0.94601 1.69964 0.97485 1.36084 1.48715 0.86463 0.77271 0.84388 0.78735 1.20020 1.21023 1.20028 1.83025 0.94611 1.07480 1.68926 0.90686 0.91245 0.90626 0.84329 0.91000 0.92195 0.88620 0.77961 0.95206 0.95201 0.92350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.67 10.31 36.01 0.37 -0.30 16 2 C -0.21 -2.47 6.28 -35.86 -0.23 -2.70 16 3 C -0.15 -1.91 9.82 -41.41 -0.41 -2.32 16 4 C -0.03 -0.51 5.90 -105.47 -0.62 -1.14 16 5 C -0.10 -1.50 9.56 36.01 0.34 -1.16 16 6 C -0.26 -4.47 6.45 -36.79 -0.24 -4.71 16 7 C 0.57 12.40 7.78 -12.90 -0.10 12.30 16 8 O -0.54 -13.24 14.24 5.19 0.07 -13.17 16 9 N -0.71 -15.83 5.54 -62.83 -0.35 -16.18 16 10 C 0.25 6.77 5.43 -5.19 -0.03 6.74 16 11 C -0.55 -14.99 9.28 -34.44 -0.32 -15.31 16 12 H 0.06 1.61 7.60 -52.48 -0.40 1.21 16 13 C 0.07 1.81 5.46 -17.82 -0.10 1.72 16 14 N -0.89 -26.14 13.29 55.43 0.74 -25.40 16 15 Si 0.90 20.93 29.54 -169.99 -5.02 15.90 16 16 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 17 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 18 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 19 S 0.19 2.62 22.10 -107.50 -2.38 0.24 16 20 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 21 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 22 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 23 H 0.14 1.40 8.06 -52.49 -0.42 0.98 16 24 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 25 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.10 1.66 6.00 -51.93 -0.31 1.35 16 27 H 0.39 7.69 7.43 -40.82 -0.30 7.39 16 28 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 276.68 15.07 4.17 4.17 Total: -1.00 -31.40 276.68 -7.62 -39.01 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: -3.53 Total: 2.28 kcal Atomic # 6 Polarization: -5.53 SS G_CDS: -1.32 Total: -6.85 kcal Atomic # 7 Polarization: -41.97 SS G_CDS: 0.39 Total: -41.58 kcal Atomic # 8 Polarization: -13.24 SS G_CDS: 0.07 Total: -13.17 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.90 kcal Atomic # 16 Polarization: 2.62 SS G_CDS: -2.38 Total: 0.24 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -31.40 -7.62 -39.01 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867873502.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.892 kcal (2) G-P(sol) polarization free energy of solvation -31.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds