Wall clock time and date at job start Sun Mar 29 2020 22:05:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33816 * 124.51986 * 2 1 4 4 C 1.37477 * 115.09687 * 180.02562 * 3 2 1 5 5 C 1.50703 * 123.34954 * 179.97438 * 4 3 2 6 6 C 1.36644 * 113.29926 * 0.23424 * 4 3 2 7 7 C 1.46582 * 125.45827 * 179.74425 * 6 4 3 8 8 O 1.21697 * 120.00245 * 359.97438 * 7 6 4 9 9 N 1.34776 * 119.99781 * 179.97438 * 7 6 4 10 10 C 1.46504 * 119.99812 * 179.97438 * 9 7 6 11 11 C 1.50699 * 109.47038 * 179.97438 * 10 9 7 12 12 H 1.08011 * 120.00355 * 0.02562 * 11 10 9 13 13 C 1.37873 * 120.00219 * 179.97438 * 11 10 9 14 14 N 1.31519 * 119.99935 * 0.02562 * 13 11 10 15 15 Si 1.86806 * 120.00368 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.46575 * 60.00227 * 15 13 11 17 17 H 1.48498 * 109.47194 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.47093 * 300.00215 * 15 13 11 19 19 S 1.70619 * 124.52256 * 180.02562 * 2 1 3 20 20 H 1.09005 * 109.46870 * 89.99852 * 1 2 3 21 21 H 1.09002 * 109.47428 * 210.00095 * 1 2 3 22 22 H 1.09003 * 109.47368 * 330.00270 * 1 2 3 23 23 H 1.07996 * 122.45496 * 0.04065 * 3 2 1 24 24 H 1.09002 * 109.47152 * 90.02652 * 5 4 3 25 25 H 1.09001 * 109.46980 * 330.02752 * 5 4 3 26 26 H 1.09004 * 109.47113 * 210.02733 * 5 4 3 27 27 H 0.97005 * 119.99996 * 359.97438 * 9 7 6 28 28 H 1.08998 * 109.46786 * 299.99577 * 10 9 7 29 29 H 1.08993 * 109.47373 * 60.00045 * 10 9 7 30 30 H 0.96995 * 119.99878 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2653 1.1025 0.0000 4 6 3.6215 0.8775 -0.0006 5 6 4.6450 1.9837 -0.0012 6 6 3.9493 -0.4491 -0.0061 7 6 5.3123 -0.9882 -0.0134 8 8 6.2658 -0.2320 -0.0153 9 7 5.5096 -2.3215 -0.0179 10 6 6.8719 -2.8603 -0.0257 11 6 6.8163 -4.3663 -0.0290 12 1 5.8617 -4.8716 -0.0260 13 6 7.9841 -5.0992 -0.0368 14 7 9.1466 -4.4841 -0.0410 15 14 7.9153 -6.9660 -0.0401 16 1 7.1909 -7.4324 -1.2496 17 1 9.2962 -7.5122 -0.0481 18 1 7.2042 -7.4373 1.1754 19 16 2.4740 -1.4057 -0.0006 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3634 -0.8900 0.5138 22 1 -0.3634 0.8900 0.5138 23 1 1.8429 2.0965 0.0006 24 1 4.8925 2.2503 1.0263 25 1 4.2380 2.8549 -0.5146 26 1 5.5446 1.6461 -0.5158 27 1 4.7495 -2.9242 -0.0161 28 1 7.3945 -2.5138 -0.9172 29 1 7.4029 -2.5187 0.8627 30 1 9.9681 -4.9997 -0.0461 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000867873502.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:51 Heat of formation + Delta-G solvation = -45.300602 kcal Electronic energy + Delta-G solvation = -14265.123531 eV Core-core repulsion = 11764.450485 eV Total energy + Delta-G solvation = -2500.673047 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.78780 -38.96041 -36.20986 -34.42744 -33.57579 -30.26840 -29.05663 -27.87484 -24.81307 -22.95657 -22.22179 -20.40782 -18.80364 -18.19586 -17.09478 -16.76279 -16.35926 -16.12603 -15.28957 -15.08786 -14.60671 -14.15964 -14.07476 -13.96226 -13.80815 -13.72025 -12.95580 -12.76406 -12.70006 -12.59100 -12.49792 -12.24341 -11.77020 -11.54318 -10.87384 -10.82224 -10.03077 -9.52842 -9.37680 -8.31197 -6.48794 -0.47379 0.49330 0.93834 1.40210 1.42236 1.46877 1.55116 2.20277 2.28064 2.50539 3.03486 3.80029 3.92113 4.22643 4.29515 4.57298 4.66408 4.76391 4.78557 5.01114 5.03215 5.10011 5.18360 5.19482 5.38014 5.42828 5.57450 5.62214 5.80003 6.58894 6.76138 7.17324 7.32651 8.80936 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.036471 B = 0.005696 C = 0.004949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.541098 B = 4914.283159 C = 5656.068513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.179 4.179 3 C -0.164 4.164 4 C -0.021 4.021 5 C -0.104 4.104 6 C -0.314 4.314 7 C 0.569 3.431 8 O -0.582 6.582 9 N -0.706 5.706 10 C 0.268 3.732 11 C -0.562 4.562 12 H 0.081 0.919 13 C 0.007 3.993 14 N -0.929 5.929 15 Si 0.987 3.013 16 H -0.261 1.261 17 H -0.283 1.283 18 H -0.262 1.262 19 S 0.211 5.789 20 H 0.093 0.907 21 H 0.080 0.920 22 H 0.098 0.902 23 H 0.173 0.827 24 H 0.075 0.925 25 H 0.094 0.906 26 H 0.060 0.940 27 H 0.401 0.599 28 H -0.008 1.008 29 H -0.008 1.008 30 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.987 7.672 0.065 21.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.299 4.299 3 C -0.194 4.194 4 C -0.037 4.037 5 C -0.162 4.162 6 C -0.434 4.434 7 C 0.358 3.642 8 O -0.466 6.466 9 N -0.355 5.355 10 C 0.146 3.854 11 C -0.599 4.599 12 H 0.099 0.901 13 C -0.193 4.193 14 N -0.567 5.567 15 Si 0.809 3.191 16 H -0.186 1.186 17 H -0.208 1.208 18 H -0.186 1.186 19 S 0.479 5.521 20 H 0.111 0.889 21 H 0.099 0.901 22 H 0.116 0.884 23 H 0.190 0.810 24 H 0.093 0.907 25 H 0.113 0.887 26 H 0.079 0.921 27 H 0.236 0.764 28 H 0.010 0.990 29 H 0.010 0.990 30 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -19.429 6.552 0.065 20.504 hybrid contribution 0.866 0.509 0.008 1.004 sum -18.563 7.061 0.073 19.861 Atomic orbital electron populations 1.20572 0.84427 1.04897 1.04416 1.24718 1.03119 0.96799 1.05267 1.20008 0.90618 1.01224 1.07532 1.19811 0.96265 0.92815 0.94840 1.20705 0.97053 0.95480 1.02998 1.24324 0.96616 0.98957 1.23459 1.17599 0.87863 0.82466 0.76315 1.90690 1.43883 1.58613 1.53405 1.46137 1.10591 1.05761 1.72986 1.18612 0.78436 0.93860 0.94468 1.21546 0.94266 0.90475 1.53625 0.90079 1.26064 0.94336 1.05323 0.93565 1.70128 0.98479 1.38562 1.49548 0.85185 0.77507 0.76854 0.79552 1.18600 1.20796 1.18617 1.82885 0.92668 1.07861 1.68638 0.88876 0.90065 0.88353 0.80954 0.90670 0.88697 0.92142 0.76401 0.98996 0.98996 0.92089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.95 10.31 71.24 0.73 -0.22 16 2 C -0.18 -3.58 6.28 24.68 0.15 -3.42 16 3 C -0.16 -3.59 9.82 21.08 0.21 -3.39 16 4 C -0.02 -0.65 5.90 -20.42 -0.12 -0.77 16 5 C -0.10 -3.02 9.56 71.24 0.68 -2.34 16 6 C -0.31 -11.08 6.45 24.08 0.16 -10.92 16 7 C 0.57 26.11 7.78 86.42 0.67 26.78 16 8 O -0.58 -30.77 14.24 -4.34 -0.06 -30.83 16 9 N -0.71 -33.28 5.54 -470.92 -2.61 -35.89 16 10 C 0.27 15.45 5.43 85.63 0.46 15.92 16 11 C -0.56 -31.59 9.28 25.60 0.24 -31.35 16 12 H 0.08 4.15 7.60 -2.90 -0.02 4.13 16 13 C 0.01 0.40 5.46 84.65 0.46 0.86 16 14 N -0.93 -56.72 13.29 21.45 0.28 -56.44 16 15 Si 0.99 42.81 29.54 68.60 2.03 44.84 16 16 H -0.26 -10.74 7.11 99.48 0.71 -10.04 16 17 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 18 H -0.26 -10.75 7.11 99.48 0.71 -10.05 16 19 S 0.21 5.40 22.10 -56.49 -1.25 4.15 16 20 H 0.09 0.83 8.14 -2.38 -0.02 0.81 16 21 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 22 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 23 H 0.17 2.61 8.06 -2.91 -0.02 2.59 16 24 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 25 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 26 H 0.06 2.22 6.00 -2.38 -0.01 2.20 16 27 H 0.40 16.34 7.43 -92.70 -0.69 15.66 16 28 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 29 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 30 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 Total: -1.00 -72.42 276.68 2.50 -69.92 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: 0.47 Total: 13.10 kcal Atomic # 6 Polarization: -12.49 SS G_CDS: 3.65 Total: -8.84 kcal Atomic # 7 Polarization: -90.01 SS G_CDS: -2.33 Total: -92.33 kcal Atomic # 8 Polarization: -30.77 SS G_CDS: -0.06 Total: -30.83 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.84 kcal Atomic # 16 Polarization: 5.40 SS G_CDS: -1.25 Total: 4.15 kcal Total: -72.42 2.50 -69.92 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867873502.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.615 kcal (2) G-P(sol) polarization free energy of solvation -72.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds