Wall clock time and date at job start Sun Mar 29 2020 22:25:22
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50697 * 1
3 3 C 1.38377 * 120.00750 * 2 1
4 4 Cl 1.73598 * 120.01144 * 359.97438 * 3 2 1
5 5 C 1.38327 * 119.97345 * 180.23136 * 3 2 1
6 6 C 1.38234 * 119.98695 * 359.77586 * 5 3 2
7 7 C 1.38220 * 120.01456 * 359.97438 * 6 5 3
8 8 C 1.38195 * 120.00837 * 179.75088 * 2 1 3
9 9 C 1.50697 * 119.99087 * 0.02562 * 8 2 1
10 10 N 1.46905 * 109.47066 * 79.72466 * 9 8 2
11 11 C 1.46901 * 110.99870 * 180.02562 * 10 9 8
12 12 C 1.50697 * 109.46943 * 180.02562 * 11 10 9
13 13 H 1.08000 * 120.00162 * 359.97438 * 12 11 10
14 14 C 1.37883 * 120.00023 * 180.02562 * 12 11 10
15 15 N 1.31517 * 119.99532 * 359.97438 * 14 12 11
16 16 Si 1.86794 * 120.00003 * 179.97438 * 14 12 11
17 17 H 1.48504 * 109.46907 * 60.00117 * 16 14 12
18 18 H 1.48504 * 109.47065 * 179.97438 * 16 14 12
19 19 H 1.48494 * 109.47302 * 300.00070 * 16 14 12
20 20 H 1.08999 * 109.46919 * 270.25044 * 1 2 3
21 21 H 1.09002 * 109.47355 * 30.24625 * 1 2 3
22 22 H 1.08995 * 109.47221 * 150.25236 * 1 2 3
23 23 H 1.08000 * 120.00959 * 179.78831 * 5 3 2
24 24 H 1.08006 * 119.99266 * 179.97438 * 6 5 3
25 25 H 1.07999 * 119.98872 * 180.02562 * 7 6 5
26 26 H 1.09001 * 109.47558 * 319.72629 * 9 8 2
27 27 H 1.08998 * 109.47216 * 199.72291 * 9 8 2
28 28 H 1.00901 * 110.99869 * 56.04737 * 10 9 8
29 29 H 1.09004 * 109.47031 * 299.99620 * 11 10 9
30 30 H 1.08995 * 109.47111 * 59.99900 * 11 10 9
31 31 H 0.97001 * 119.99132 * 180.02562 * 15 14 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1990 1.1983 0.0000
4 17 1.3315 2.7020 -0.0007
5 6 3.5823 1.1975 -0.0048
6 6 4.2725 -0.0002 -0.0050
7 6 3.5807 -1.1969 0.0002
8 6 2.1981 -1.1967 0.0052
9 6 1.4446 -2.5017 0.0103
10 7 0.9863 -2.8079 -1.3515
11 6 0.2455 -4.0760 -1.3850
12 6 -0.2070 -4.3563 -2.7948
13 1 0.0315 -3.6617 -3.5867
14 6 -0.9264 -5.4990 -3.0736
15 7 -1.2172 -6.3446 -2.1092
16 14 -1.4879 -5.8461 -4.8211
17 1 -0.3034 -5.9415 -5.7118
18 1 -2.2367 -7.1281 -4.8550
19 1 -2.3692 -4.7450 -5.2857
20 1 -0.3633 0.0045 1.0277
21 1 -0.3634 0.8878 -0.5177
22 1 -0.3633 -0.8922 -0.5099
23 1 4.1230 2.1324 -0.0083
24 1 5.3525 -0.0010 -0.0092
25 1 4.1204 -2.1323 0.0005
26 1 0.5836 -2.4217 0.6739
27 1 2.1006 -3.2987 0.3606
28 1 1.7604 -2.8238 -1.9985
29 1 0.8929 -4.8841 -1.0441
30 1 -0.6237 -4.0063 -0.7310
31 1 -1.7230 -7.1487 -2.3055
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000877484005.mol2 31
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 22:25:22
Heat of formation + Delta-G solvation = 4.222194 kcal
Electronic energy + Delta-G solvation = -14295.698735 eV
Core-core repulsion = 11795.129451 eV
Total energy + Delta-G solvation = -2500.569284 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 239.077 amu
Computer time = 0.18 seconds
Orbital eigenvalues (eV)
-39.56081 -36.50064 -35.32661 -32.96818 -32.22174 -30.74757 -27.38828 -26.48943
-24.31542 -21.89307 -21.48113 -20.57176 -16.83720 -16.15763 -15.95324 -15.14466
-14.70618 -14.34421 -14.01787 -13.37126 -13.15362 -13.06330 -12.36272 -12.20823
-11.99865 -11.80437 -11.39432 -11.37153 -11.14354 -10.87552 -10.74340 -10.69189
-10.50136 -9.94521 -9.25184 -8.61042 -8.50654 -8.48271 -7.36638 -6.05433
-4.07572 1.25470 1.36559 2.21366 3.32940 3.36793 3.40077 3.68751
4.42081 4.83079 4.87077 5.05636 5.27207 5.30695 5.38454 5.49307
5.65432 5.84784 5.90540 5.97272 6.03006 6.19668 6.31413 6.43640
6.59907 6.76123 6.93465 7.18657 7.36872 7.74620 8.08439 8.32451
8.54751 9.01223 9.57509 11.05567
Molecular weight = 239.08amu
Principal moments of inertia in cm(-1)
A = 0.035020 B = 0.005008 C = 0.004725
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 799.349032 B = 5589.154888 C = 5925.066326
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.128 4.128
2 C -0.047 4.047
3 C -0.041 4.041
4 Cl -0.078 7.078
5 C -0.116 4.116
6 C -0.119 4.119
7 C -0.109 4.109
8 C -0.061 4.061
9 C 0.094 3.906
10 N -0.682 5.682
11 C 0.194 3.806
12 C -0.515 4.515
13 H 0.062 0.938
14 C 0.057 3.943
15 N -0.898 5.898
16 Si 0.900 3.100
17 H -0.277 1.277
18 H -0.288 1.288
19 H -0.276 1.276
20 H 0.067 0.933
21 H 0.067 0.933
22 H 0.100 0.900
23 H 0.127 0.873
24 H 0.127 0.873
25 H 0.125 0.875
26 H 0.077 0.923
27 H 0.030 0.970
28 H 0.331 0.669
29 H -0.013 1.013
30 H 0.029 0.971
31 H 0.262 0.738
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.550 13.572 5.897 17.091
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.184 4.184
2 C -0.049 4.049
3 C -0.067 4.067
4 Cl -0.049 7.049
5 C -0.135 4.135
6 C -0.137 4.137
7 C -0.128 4.128
8 C -0.062 4.062
9 C -0.036 4.036
10 N -0.312 5.312
11 C 0.068 3.932
12 C -0.554 4.554
13 H 0.080 0.920
14 C -0.145 4.145
15 N -0.537 5.537
16 Si 0.727 3.273
17 H -0.203 1.203
18 H -0.213 1.213
19 H -0.201 1.201
20 H 0.086 0.914
21 H 0.086 0.914
22 H 0.119 0.881
23 H 0.145 0.855
24 H 0.145 0.855
25 H 0.143 0.857
26 H 0.095 0.905
27 H 0.048 0.952
28 H 0.147 0.853
29 H 0.005 0.995
30 H 0.047 0.953
31 H 0.072 0.928
Dipole moment (debyes) X Y Z Total
from point charges 7.779 13.894 5.989 17.012
hybrid contribution 0.413 -0.763 -0.791 1.174
sum 8.192 13.131 5.198 16.326
Atomic orbital electron populations
1.21000 0.89998 1.05092 1.02355 1.19667 0.97164 0.90432 0.97612
1.20818 0.92250 0.86484 1.07192 1.98335 1.77239 1.32328 1.97012
1.20929 0.91914 0.98931 1.01718 1.20981 0.99775 0.91730 1.01248
1.21201 0.93778 0.98329 0.99464 1.19916 0.93211 0.94915 0.98175
1.20882 0.97422 0.90992 0.94256 1.60711 1.28246 1.38693 1.03598
1.19582 0.92744 0.83172 0.97732 1.21132 1.34605 1.05798 0.93852
0.91979 1.24980 0.96046 0.96003 0.97450 1.69953 1.39819 1.11970
1.31992 0.86536 0.78807 0.77431 0.84479 1.20274 1.21334 1.20125
0.91436 0.91410 0.88148 0.85502 0.85521 0.85676 0.90466 0.95182
0.85264 0.99504 0.95277 0.92828
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -1.90 8.86 36.00 0.32 -1.58 16
2 C -0.05 -0.71 5.88 -104.59 -0.62 -1.33 16
3 C -0.04 -0.56 6.31 -39.50 -0.25 -0.81 16
4 Cl -0.08 -0.98 27.30 -51.86 -1.42 -2.39 16
5 C -0.12 -1.40 9.83 -39.55 -0.39 -1.79 16
6 C -0.12 -1.38 10.05 -39.59 -0.40 -1.78 16
7 C -0.11 -1.44 9.67 -39.58 -0.38 -1.82 16
8 C -0.06 -0.93 5.39 -104.63 -0.56 -1.50 16
9 C 0.09 1.62 4.94 -4.97 -0.02 1.59 16
10 N -0.68 -14.17 5.80 -116.34 -0.67 -14.85 16
11 C 0.19 4.96 5.44 -4.98 -0.03 4.93 16
12 C -0.52 -14.41 9.32 -34.44 -0.32 -14.73 16
13 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16
14 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16
15 N -0.90 -26.56 13.29 55.43 0.74 -25.83 16
16 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 16
17 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16
18 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16
19 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16
20 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16
21 H 0.07 0.95 6.91 -51.93 -0.36 0.60 16
22 H 0.10 1.72 6.33 -51.93 -0.33 1.39 16
23 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16
24 H 0.13 1.11 8.06 -52.48 -0.42 0.69 16
25 H 0.13 1.47 8.04 -52.49 -0.42 1.05 16
26 H 0.08 1.34 7.30 -51.93 -0.38 0.96 16
27 H 0.03 0.51 8.00 -51.93 -0.42 0.09 16
28 H 0.33 6.72 8.72 -39.29 -0.34 6.38 16
29 H -0.01 -0.35 8.14 -51.93 -0.42 -0.77 16
30 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16
31 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16
LS Contribution 280.36 15.07 4.22 4.22
Total: -1.00 -29.08 280.36 -8.80 -37.88
By element:
Atomic # 1 Polarization: 5.60 SS G_CDS: -3.91 Total: 1.70 kcal
Atomic # 6 Polarization: -14.54 SS G_CDS: -2.75 Total: -17.29 kcal
Atomic # 7 Polarization: -40.73 SS G_CDS: 0.06 Total: -40.67 kcal
Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal
Atomic # 17 Polarization: -0.98 SS G_CDS: -1.42 Total: -2.39 kcal
Total LS contribution 4.22 Total: 4.22 kcal
Total: -29.08 -8.80 -37.88 kcal
The number of atoms in the molecule is 31
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000877484005.mol2 31
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 42.105 kcal
(2) G-P(sol) polarization free energy of solvation -29.078 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.026 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.804 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.883 kcal
(6) G-S(sol) free energy of system = (1) + (5) 4.222 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.18 seconds