Wall clock time and date at job start Sun Mar 29 2020 22:25:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38377 * 120.00750 * 2 1 4 4 Cl 1.73598 * 120.01144 * 359.97438 * 3 2 1 5 5 C 1.38327 * 119.97345 * 180.23136 * 3 2 1 6 6 C 1.38234 * 119.98695 * 359.77586 * 5 3 2 7 7 C 1.38220 * 120.01456 * 359.97438 * 6 5 3 8 8 C 1.38195 * 120.00837 * 179.75088 * 2 1 3 9 9 C 1.50697 * 119.99087 * 0.02562 * 8 2 1 10 10 N 1.46905 * 109.47066 * 79.72466 * 9 8 2 11 11 C 1.46901 * 110.99870 * 180.02562 * 10 9 8 12 12 C 1.50697 * 109.46943 * 180.02562 * 11 10 9 13 13 H 1.08000 * 120.00162 * 359.97438 * 12 11 10 14 14 C 1.37883 * 120.00023 * 180.02562 * 12 11 10 15 15 N 1.31517 * 119.99532 * 359.97438 * 14 12 11 16 16 Si 1.86794 * 120.00003 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.46907 * 60.00117 * 16 14 12 18 18 H 1.48504 * 109.47065 * 179.97438 * 16 14 12 19 19 H 1.48494 * 109.47302 * 300.00070 * 16 14 12 20 20 H 1.08999 * 109.46919 * 270.25044 * 1 2 3 21 21 H 1.09002 * 109.47355 * 30.24625 * 1 2 3 22 22 H 1.08995 * 109.47221 * 150.25236 * 1 2 3 23 23 H 1.08000 * 120.00959 * 179.78831 * 5 3 2 24 24 H 1.08006 * 119.99266 * 179.97438 * 6 5 3 25 25 H 1.07999 * 119.98872 * 180.02562 * 7 6 5 26 26 H 1.09001 * 109.47558 * 319.72629 * 9 8 2 27 27 H 1.08998 * 109.47216 * 199.72291 * 9 8 2 28 28 H 1.00901 * 110.99869 * 56.04737 * 10 9 8 29 29 H 1.09004 * 109.47031 * 299.99620 * 11 10 9 30 30 H 1.08995 * 109.47111 * 59.99900 * 11 10 9 31 31 H 0.97001 * 119.99132 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1990 1.1983 0.0000 4 17 1.3315 2.7020 -0.0007 5 6 3.5823 1.1975 -0.0048 6 6 4.2725 -0.0002 -0.0050 7 6 3.5807 -1.1969 0.0002 8 6 2.1981 -1.1967 0.0052 9 6 1.4446 -2.5017 0.0103 10 7 0.9863 -2.8079 -1.3515 11 6 0.2455 -4.0760 -1.3850 12 6 -0.2070 -4.3563 -2.7948 13 1 0.0315 -3.6617 -3.5867 14 6 -0.9264 -5.4990 -3.0736 15 7 -1.2172 -6.3446 -2.1092 16 14 -1.4879 -5.8461 -4.8211 17 1 -0.3034 -5.9415 -5.7118 18 1 -2.2367 -7.1281 -4.8550 19 1 -2.3692 -4.7450 -5.2857 20 1 -0.3633 0.0045 1.0277 21 1 -0.3634 0.8878 -0.5177 22 1 -0.3633 -0.8922 -0.5099 23 1 4.1230 2.1324 -0.0083 24 1 5.3525 -0.0010 -0.0092 25 1 4.1204 -2.1323 0.0005 26 1 0.5836 -2.4217 0.6739 27 1 2.1006 -3.2987 0.3606 28 1 1.7604 -2.8238 -1.9985 29 1 0.8929 -4.8841 -1.0441 30 1 -0.6237 -4.0063 -0.7310 31 1 -1.7230 -7.1487 -2.3055 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877484005.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:25:22 Heat of formation + Delta-G solvation = -12.754362 kcal Electronic energy + Delta-G solvation = -14296.434893 eV Core-core repulsion = 11795.129451 eV Total energy + Delta-G solvation = -2501.305442 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.077 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.63969 -37.60328 -36.88242 -34.75311 -33.57429 -32.07612 -29.02920 -27.80231 -25.89324 -23.50691 -22.90469 -21.72325 -18.66314 -17.49613 -17.17629 -16.67741 -16.15319 -15.81681 -15.46517 -14.75398 -14.63259 -14.30230 -13.91350 -13.35251 -13.31219 -13.25831 -13.16473 -12.76892 -12.63536 -12.34072 -12.26093 -12.11498 -11.87132 -11.58448 -11.29615 -10.65155 -9.69559 -9.53343 -9.11980 -8.21963 -6.32862 0.21926 0.32679 1.19993 1.42122 1.45222 1.53281 2.40432 2.64556 3.11659 3.62406 3.81652 3.91998 4.09525 4.22257 4.32452 4.53203 4.66906 4.75403 4.79885 4.81805 4.97103 5.09270 5.25079 5.30973 5.36809 5.46736 5.59634 5.65806 5.89970 6.02163 6.42273 6.69071 6.87964 7.37953 8.89236 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.035020 B = 0.005008 C = 0.004725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.349032 B = 5589.154888 C = 5925.066326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.065 4.065 3 C -0.052 4.052 4 Cl -0.071 7.071 5 C -0.110 4.110 6 C -0.110 4.110 7 C -0.112 4.112 8 C -0.080 4.080 9 C 0.100 3.900 10 N -0.678 5.678 11 C 0.210 3.790 12 C -0.536 4.536 13 H 0.063 0.937 14 C 0.004 3.996 15 N -0.933 5.933 16 Si 0.971 3.029 17 H -0.267 1.267 18 H -0.282 1.282 19 H -0.270 1.270 20 H 0.076 0.924 21 H 0.071 0.929 22 H 0.071 0.929 23 H 0.154 0.846 24 H 0.163 0.837 25 H 0.138 0.862 26 H 0.069 0.931 27 H 0.033 0.967 28 H 0.335 0.665 29 H -0.036 1.036 30 H 0.002 0.998 31 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.014 14.830 5.163 18.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.066 4.066 3 C -0.078 4.078 4 Cl -0.042 7.042 5 C -0.129 4.129 6 C -0.128 4.128 7 C -0.130 4.130 8 C -0.081 4.081 9 C -0.029 4.029 10 N -0.308 5.308 11 C 0.082 3.918 12 C -0.574 4.574 13 H 0.081 0.919 14 C -0.195 4.195 15 N -0.573 5.573 16 Si 0.796 3.204 17 H -0.191 1.191 18 H -0.208 1.208 19 H -0.195 1.195 20 H 0.095 0.905 21 H 0.090 0.910 22 H 0.090 0.910 23 H 0.172 0.828 24 H 0.180 0.820 25 H 0.156 0.844 26 H 0.087 0.913 27 H 0.051 0.949 28 H 0.152 0.848 29 H -0.019 1.019 30 H 0.020 0.980 31 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 9.258 15.174 5.261 18.538 hybrid contribution 0.014 -1.078 -0.493 1.185 sum 9.272 14.096 4.768 17.533 Atomic orbital electron populations 1.20896 0.90609 1.03767 1.02614 1.19702 0.97007 0.91164 0.98763 1.20945 0.93120 0.86289 1.07460 1.98336 1.77299 1.31609 1.96992 1.21316 0.91257 1.00383 0.99925 1.21366 1.01486 0.90633 0.99270 1.21416 0.92893 0.99875 0.98830 1.19713 0.94128 0.93577 1.00682 1.20807 0.97497 0.92674 0.91950 1.60556 1.28653 1.35701 1.05931 1.19212 0.91852 0.84509 0.96220 1.21494 1.34952 1.06136 0.94798 0.91888 1.25910 0.95932 0.95687 1.01947 1.70080 1.40455 1.12476 1.34319 0.85411 0.78600 0.77387 0.79049 1.19138 1.20773 1.19471 0.90546 0.90974 0.91007 0.82850 0.81988 0.84413 0.91310 0.94856 0.84831 1.01875 0.97955 0.92608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.67 8.86 71.24 0.63 -3.04 16 2 C -0.07 -1.91 5.88 -19.84 -0.12 -2.03 16 3 C -0.05 -1.32 6.31 22.32 0.14 -1.18 16 4 Cl -0.07 -1.67 27.30 -2.72 -0.07 -1.74 16 5 C -0.11 -2.29 9.83 22.29 0.22 -2.07 16 6 C -0.11 -2.14 10.05 22.26 0.22 -1.92 16 7 C -0.11 -2.71 9.67 22.27 0.22 -2.49 16 8 C -0.08 -2.40 5.39 -19.87 -0.11 -2.50 16 9 C 0.10 3.52 4.94 85.55 0.42 3.94 16 10 N -0.68 -28.91 5.80 -521.98 -3.03 -31.94 16 11 C 0.21 11.13 5.44 85.56 0.47 11.59 16 12 C -0.54 -30.45 9.32 25.60 0.24 -30.21 16 13 H 0.06 3.49 7.81 -2.91 -0.02 3.47 16 14 C 0.00 0.21 5.46 84.66 0.46 0.67 16 15 N -0.93 -56.15 13.29 21.45 0.28 -55.86 16 16 Si 0.97 44.21 29.54 68.60 2.03 46.23 16 17 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 18 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 19 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 20 H 0.08 2.07 8.14 -2.39 -0.02 2.06 16 21 H 0.07 2.04 6.91 -2.39 -0.02 2.02 16 22 H 0.07 2.56 6.33 -2.39 -0.02 2.55 16 23 H 0.15 2.36 8.06 -2.91 -0.02 2.34 16 24 H 0.16 2.04 8.06 -2.91 -0.02 2.01 16 25 H 0.14 2.93 8.04 -2.91 -0.02 2.91 16 26 H 0.07 2.50 7.30 -2.39 -0.02 2.49 16 27 H 0.03 1.15 8.00 -2.39 -0.02 1.13 16 28 H 0.33 13.76 8.72 -89.69 -0.78 12.97 16 29 H -0.04 -2.06 8.14 -2.39 -0.02 -2.08 16 30 H 0.00 0.13 8.14 -2.39 -0.02 0.12 16 31 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 Total: -1.00 -62.66 280.36 2.35 -60.31 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: 0.35 Total: 12.25 kcal Atomic # 6 Polarization: -32.04 SS G_CDS: 2.80 Total: -29.24 kcal Atomic # 7 Polarization: -85.06 SS G_CDS: -2.74 Total: -87.80 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.23 kcal Atomic # 17 Polarization: -1.67 SS G_CDS: -0.07 Total: -1.74 kcal Total: -62.66 2.35 -60.31 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877484005.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.552 kcal (2) G-P(sol) polarization free energy of solvation -62.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds