Wall clock time and date at job start Sun Mar 29 2020 22:19:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 120.00028 * 2 1 4 4 H 1.48498 * 109.47137 * 269.99702 * 3 2 1 5 5 H 1.48499 * 109.47124 * 29.99907 * 3 2 1 6 6 H 1.48498 * 109.47149 * 149.99952 * 3 2 1 7 7 C 1.38814 * 119.99982 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99979 * 164.29666 * 7 2 1 9 9 N 1.36938 * 120.00161 * 344.30330 * 7 2 1 10 10 C 1.47235 * 121.35189 * 155.43375 * 9 7 2 11 11 C 1.52782 * 107.89635 * 115.64532 * 10 9 7 12 12 C 1.50615 * 110.86437 * 47.42892 * 11 10 9 13 13 C 1.38991 * 117.56632 * 160.30973 * 12 11 10 14 14 C 1.38057 * 120.60648 * 179.59206 * 13 12 11 15 15 F 1.35097 * 120.12382 * 179.97438 * 14 13 12 16 16 C 1.38696 * 119.74860 * 359.95295 * 14 13 12 17 17 F 1.35098 * 120.18234 * 180.21352 * 16 14 13 18 18 C 1.38111 * 119.64046 * 0.19815 * 16 14 13 19 19 C 1.37688 * 122.86104 * 340.21733 * 12 11 10 20 20 C 1.46687 * 121.34447 * 335.40435 * 9 7 2 21 21 H 0.96997 * 120.00134 * 0.02562 * 1 2 3 22 22 H 1.09000 * 109.77563 * 356.04443 * 10 9 7 23 23 H 1.08998 * 109.77345 * 235.24542 * 10 9 7 24 24 H 1.08994 * 109.20083 * 167.78620 * 11 10 9 25 25 H 1.09006 * 109.20044 * 287.12166 * 11 10 9 26 26 H 1.08003 * 119.69660 * 359.58187 * 13 12 11 27 27 H 1.08006 * 119.73450 * 180.02562 * 18 16 14 28 28 H 1.09002 * 109.43643 * 104.31108 * 20 9 7 29 29 H 1.08997 * 109.39811 * 344.41738 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0600 -1.2197 -0.2526 9 7 1.3639 -2.3658 0.3219 10 6 1.8517 -3.6702 -0.1560 11 6 2.2749 -4.4885 1.0629 12 6 1.2180 -4.4399 2.1348 13 6 1.2399 -5.4345 3.1054 14 6 0.3057 -5.4456 4.1218 15 9 0.3358 -6.4174 5.0598 16 6 -0.6635 -4.4550 4.1766 17 9 -1.5792 -4.4549 5.1698 18 6 -0.6871 -3.4684 3.2103 19 6 0.2505 -3.4615 2.1863 20 6 0.1578 -2.3633 1.1568 21 1 -0.4850 0.8400 -0.0004 22 1 2.7060 -3.5248 -0.8172 23 1 1.0553 -4.1887 -0.6899 24 1 2.4329 -5.5241 0.7621 25 1 3.2061 -4.0845 1.4601 26 1 1.9947 -6.2060 3.0639 27 1 -1.4410 -2.6961 3.2517 28 1 -0.7182 -2.5275 0.5291 29 1 0.0680 -1.4007 1.6602 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880446565.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:19:23 Heat of formation + Delta-G solvation = -62.551075 kcal Electronic energy + Delta-G solvation = -16733.982500 eV Core-core repulsion = 13678.721030 eV Total energy + Delta-G solvation = -3055.261470 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.082 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -50.47835 -49.56768 -40.71606 -37.36103 -34.45190 -33.13375 -31.47966 -29.89333 -27.37321 -24.93913 -23.86076 -23.65613 -20.98764 -18.99425 -18.74387 -17.89500 -17.39507 -17.28299 -16.82738 -16.00539 -15.74572 -15.58188 -15.32819 -15.08751 -14.76565 -14.60989 -14.01752 -13.59653 -13.35498 -12.94188 -12.82832 -12.61867 -12.31357 -12.09721 -11.89305 -11.80636 -11.57326 -10.66071 -9.89261 -9.37574 -8.78014 -7.90468 -5.32116 -0.04409 0.02999 1.48764 1.51389 1.59809 2.36856 2.51108 2.80155 3.22917 3.29531 3.57139 3.66496 3.82766 4.03093 4.15462 4.50732 4.58540 4.67317 4.79870 4.87648 4.93960 5.03993 5.14973 5.20152 5.35471 5.42092 5.62206 5.74396 5.83427 6.32975 7.11074 7.80184 8.34007 9.18900 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.034446 B = 0.007079 C = 0.006306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.675970 B = 3954.484258 C = 4439.132912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.050 4.050 3 Si 0.966 3.034 4 H -0.284 1.284 5 H -0.295 1.295 6 H -0.270 1.270 7 C -0.258 4.258 8 H 0.076 0.924 9 N -0.613 5.613 10 C 0.133 3.867 11 C -0.089 4.089 12 C -0.050 4.050 13 C -0.116 4.116 14 C 0.049 3.951 15 F -0.136 7.136 16 C 0.050 3.950 17 F -0.139 7.139 18 C -0.129 4.129 19 C -0.077 4.077 20 C 0.218 3.782 21 H 0.251 0.749 22 H 0.072 0.928 23 H 0.030 0.970 24 H 0.109 0.891 25 H 0.082 0.918 26 H 0.175 0.825 27 H 0.145 0.855 28 H 0.021 0.979 29 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.609 -10.276 5.064 11.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.245 4.245 3 Si 0.794 3.206 4 H -0.211 1.211 5 H -0.222 1.222 6 H -0.195 1.195 7 C -0.388 4.388 8 H 0.094 0.906 9 N -0.336 5.336 10 C 0.008 3.992 11 C -0.128 4.128 12 C -0.051 4.051 13 C -0.134 4.134 14 C 0.029 3.971 15 F -0.115 7.115 16 C 0.030 3.970 17 F -0.118 7.118 18 C -0.148 4.148 19 C -0.079 4.079 20 C 0.092 3.908 21 H 0.060 0.940 22 H 0.090 0.910 23 H 0.049 0.951 24 H 0.127 0.873 25 H 0.100 0.900 26 H 0.192 0.808 27 H 0.162 0.838 28 H 0.039 0.961 29 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.501 -10.165 5.112 11.650 hybrid contribution -0.349 1.066 0.379 1.184 sum 2.153 -9.098 5.491 10.843 Atomic orbital electron populations 1.70133 1.06543 1.25975 1.55868 1.25733 0.96089 1.01353 1.01348 0.85295 0.78076 0.79660 0.77550 1.21117 1.22188 1.19520 1.19521 0.92837 0.85297 1.41108 0.90586 1.44264 1.30212 1.02630 1.56456 1.21156 0.97985 0.85556 0.94470 1.20972 0.95804 1.02148 0.93832 1.19714 0.96129 0.92554 0.96660 1.21314 0.98821 1.00777 0.92526 1.17577 0.99129 0.88816 0.91534 1.91481 1.96219 1.60457 1.63303 1.17599 0.91092 0.98437 0.89914 1.91469 1.64663 1.96410 1.59229 1.21043 1.01194 0.98724 0.93868 1.20680 0.93968 0.97247 0.95959 1.19385 0.88638 0.93859 0.88948 0.93995 0.90953 0.95143 0.87270 0.90005 0.80775 0.83757 0.96107 0.91379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -53.44 11.10 21.65 0.24 -53.20 15 2 C -0.05 -2.69 4.99 84.86 0.42 -2.27 15 3 Si 0.97 43.38 29.58 68.60 2.03 45.41 15 4 H -0.28 -12.59 7.11 99.48 0.71 -11.88 15 5 H -0.30 -13.46 7.11 99.48 0.71 -12.76 15 6 H -0.27 -11.62 7.11 99.48 0.71 -10.92 15 7 C -0.26 -13.44 9.70 84.03 0.81 -12.62 15 8 H 0.08 3.79 7.88 -2.91 -0.02 3.77 15 9 N -0.61 -29.00 2.97 -704.19 -2.09 -31.09 15 10 C 0.13 4.89 6.52 86.17 0.56 5.45 15 11 C -0.09 -2.56 5.86 29.75 0.17 -2.38 15 12 C -0.05 -1.59 5.77 -19.84 -0.11 -1.71 15 13 C -0.12 -3.10 9.56 22.41 0.21 -2.89 15 14 C 0.05 1.48 7.30 22.34 0.16 1.64 15 15 F -0.14 -3.98 17.19 44.97 0.77 -3.20 15 16 C 0.05 1.62 7.31 22.35 0.16 1.78 15 17 F -0.14 -4.56 17.19 44.97 0.77 -3.79 15 18 C -0.13 -4.47 9.60 22.39 0.21 -4.25 15 19 C -0.08 -2.89 5.82 -19.81 -0.12 -3.00 15 20 C 0.22 10.10 4.85 85.64 0.42 10.52 15 21 H 0.25 13.92 8.31 -92.71 -0.77 13.15 15 22 H 0.07 2.51 7.96 -2.39 -0.02 2.49 15 23 H 0.03 1.11 8.14 -2.39 -0.02 1.09 15 24 H 0.11 2.26 8.10 -2.39 -0.02 2.24 15 25 H 0.08 2.33 8.14 -2.38 -0.02 2.31 15 26 H 0.17 3.36 8.05 -2.91 -0.02 3.34 15 27 H 0.14 4.80 8.05 -2.91 -0.02 4.78 15 28 H 0.02 1.06 8.14 -2.39 -0.02 1.04 15 29 H 0.07 3.58 6.34 -2.39 -0.02 3.56 15 Total: -1.00 -59.20 255.77 5.81 -53.39 By element: Atomic # 1 Polarization: 1.04 SS G_CDS: 1.17 Total: 2.21 kcal Atomic # 6 Polarization: -12.64 SS G_CDS: 2.92 Total: -9.72 kcal Atomic # 7 Polarization: -82.44 SS G_CDS: -1.85 Total: -84.29 kcal Atomic # 9 Polarization: -8.54 SS G_CDS: 1.55 Total: -6.99 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Total: -59.20 5.81 -53.39 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880446565.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.157 kcal (2) G-P(sol) polarization free energy of solvation -59.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds