Wall clock time and date at job start Sun Mar 29 2020 22:22:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86799 * 120.00074 * 2 1 4 4 H 1.48503 * 109.46878 * 274.98467 * 3 2 1 5 5 H 1.48504 * 109.47221 * 34.98160 * 3 2 1 6 6 H 1.48501 * 109.47521 * 154.98239 * 3 2 1 7 7 C 1.38811 * 120.00304 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00503 * 186.83161 * 7 2 1 9 9 N 1.36946 * 119.99781 * 6.83063 * 7 2 1 10 10 C 1.47016 * 125.64726 * 353.84691 * 9 7 2 11 11 C 1.54318 * 107.27009 * 181.09603 * 10 9 7 12 12 C 1.55158 * 102.94330 * 22.19621 * 11 10 9 13 13 C 1.52996 * 111.00321 * 82.57373 * 12 11 10 14 14 O 1.42907 * 109.46923 * 186.35270 * 13 12 11 15 15 C 1.53003 * 111.03440 * 206.41089 * 12 11 10 16 16 F 1.39908 * 109.47187 * 296.79288 * 15 12 11 17 17 F 1.39898 * 109.47467 * 56.79362 * 15 12 11 18 18 F 1.39908 * 109.46642 * 176.79570 * 15 12 11 19 19 C 1.47420 * 125.64617 * 173.89067 * 9 7 2 20 20 H 0.97004 * 120.00226 * 0.02562 * 1 2 3 21 21 H 1.08997 * 109.88733 * 300.51415 * 10 9 7 22 22 H 1.09000 * 109.88381 * 61.52343 * 10 9 7 23 23 H 1.08998 * 110.72313 * 263.82785 * 11 10 9 24 24 H 1.09004 * 110.72272 * 140.56181 * 11 10 9 25 25 H 1.09001 * 109.47033 * 306.35019 * 13 12 11 26 26 H 1.09002 * 109.47568 * 66.35247 * 13 12 11 27 27 H 0.96693 * 113.99965 * 179.97438 * 14 13 12 28 28 H 1.09007 * 110.36996 * 36.99904 * 19 9 7 29 29 H 1.08999 * 110.46265 * 274.71782 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.3923 2.1072 -1.3948 5 1 1.5042 2.6200 0.8027 6 1 3.5964 1.4121 0.5921 7 6 2.0102 -1.2021 0.0005 8 1 3.0844 -1.2054 0.1118 9 7 1.3328 -2.3840 -0.1400 10 6 -0.1292 -2.5350 -0.1717 11 6 -0.4312 -4.0413 -0.3168 12 6 0.8670 -4.7083 0.2099 13 6 0.8581 -4.7952 1.7373 14 8 2.1238 -5.2760 2.1945 15 6 1.0661 -6.0911 -0.4141 16 9 0.0154 -6.9315 -0.0304 17 9 1.0854 -5.9754 -1.8081 18 9 2.2795 -6.6309 0.0260 19 6 1.9489 -3.7155 -0.2836 20 1 -0.4851 0.8401 -0.0004 21 1 -0.5611 -2.1580 0.7554 22 1 -0.5400 -1.9887 -1.0207 23 1 -0.6020 -4.3016 -1.3614 24 1 -1.2864 -4.3242 0.2969 25 1 0.6721 -3.8063 2.1564 26 1 0.0723 -5.4793 2.0578 27 1 2.1902 -5.3561 3.1558 28 1 2.8424 -3.7891 0.3365 29 1 2.1952 -3.9108 -1.3273 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886794691.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:22:21 Heat of formation + Delta-G solvation = -178.622403 kcal Electronic energy + Delta-G solvation = -18535.757918 eV Core-core repulsion = 15044.693993 eV Total energy + Delta-G solvation = -3491.063925 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 239.087 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -49.68956 -47.22809 -47.08763 -38.45410 -35.86123 -32.98203 -30.21776 -28.61557 -25.68333 -25.33685 -23.48584 -20.41714 -19.67632 -17.99585 -17.85475 -17.39611 -16.85994 -16.43361 -14.71265 -14.63423 -14.26573 -14.00386 -13.87181 -13.62545 -13.49042 -13.31323 -13.23943 -12.88788 -12.46128 -12.04516 -11.80915 -11.27157 -11.00422 -10.83865 -10.67127 -10.26891 -10.12092 -10.10271 -9.75529 -9.66584 -8.65219 -6.92680 -5.79936 -3.12827 3.15300 3.37936 3.43785 3.45178 4.09305 4.21006 4.43624 4.46064 4.66684 5.15013 5.25064 5.44313 5.45312 5.58604 5.76626 5.90272 6.05620 6.22886 6.30075 6.59162 6.62437 7.41587 7.49719 7.73300 7.82560 8.15638 9.13689 9.73150 10.37881 11.32715 Molecular weight = 239.09amu Principal moments of inertia in cm(-1) A = 0.040387 B = 0.007846 C = 0.007577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.131366 B = 3567.646928 C = 3694.721697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.005 4.005 3 Si 0.913 3.087 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.230 4.230 8 H 0.081 0.919 9 N -0.600 5.600 10 C 0.178 3.822 11 C -0.133 4.133 12 C -0.123 4.123 13 C 0.097 3.903 14 O -0.563 6.563 15 C 0.465 3.535 16 F -0.191 7.191 17 F -0.185 7.185 18 F -0.173 7.173 19 C 0.153 3.847 20 H 0.253 0.747 21 H 0.048 0.952 22 H 0.054 0.946 23 H 0.075 0.925 24 H 0.074 0.926 25 H 0.077 0.923 26 H 0.047 0.953 27 H 0.377 0.623 28 H 0.061 0.939 29 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.453 -10.713 2.424 10.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.202 4.202 3 Si 0.743 3.257 4 H -0.215 1.215 5 H -0.218 1.218 6 H -0.205 1.205 7 C -0.357 4.357 8 H 0.098 0.902 9 N -0.326 5.326 10 C 0.053 3.947 11 C -0.171 4.171 12 C -0.126 4.126 13 C 0.019 3.981 14 O -0.368 6.368 15 C 0.410 3.590 16 F -0.173 7.173 17 F -0.166 7.166 18 F -0.155 7.155 19 C 0.027 3.973 20 H 0.064 0.936 21 H 0.066 0.934 22 H 0.073 0.927 23 H 0.093 0.907 24 H 0.092 0.908 25 H 0.095 0.905 26 H 0.065 0.935 27 H 0.224 0.776 28 H 0.079 0.921 29 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -0.375 -10.503 1.782 10.659 hybrid contribution 0.225 0.583 0.430 0.759 sum -0.150 -9.919 2.212 10.164 Atomic orbital electron populations 1.69943 1.04953 1.25261 1.56706 1.24817 0.95734 0.97726 1.01908 0.86079 0.78694 0.83314 0.77567 1.21529 1.21756 1.20548 1.19076 0.91236 0.82151 1.43276 0.90164 1.44396 1.01360 1.00741 1.86113 1.21210 0.84718 0.87090 1.01642 1.23060 0.93531 0.99685 1.00852 1.23118 1.03296 0.90088 0.96088 1.21920 0.85301 0.99640 0.91191 1.86525 1.34571 1.88838 1.26870 1.20385 0.73758 0.88601 0.76221 1.93119 1.58462 1.74643 1.91051 1.93139 1.96227 1.96231 1.31028 1.93192 1.45313 1.87806 1.89147 1.21459 0.93311 0.84691 0.97866 0.93621 0.93369 0.92748 0.90679 0.90762 0.90502 0.93453 0.77600 0.92070 0.95263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.28 10.36 55.49 0.57 -25.71 15 2 C -0.01 -0.15 5.48 -17.43 -0.10 -0.25 15 3 Si 0.91 21.75 29.56 -169.99 -5.02 16.72 15 4 H -0.29 -6.90 7.11 56.52 0.40 -6.50 15 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 15 6 H -0.28 -6.51 7.11 56.52 0.40 -6.10 15 7 C -0.23 -6.29 10.26 -15.06 -0.15 -6.44 15 8 H 0.08 2.14 7.84 -52.49 -0.41 1.73 15 9 N -0.60 -15.00 3.38 -170.08 -0.58 -15.57 15 10 C 0.18 4.14 5.00 -3.07 -0.02 4.12 15 11 C -0.13 -2.42 5.74 -24.90 -0.14 -2.56 15 12 C -0.12 -2.23 0.32 -152.36 -0.05 -2.28 15 13 C 0.10 1.56 5.89 37.16 0.22 1.78 15 14 O -0.56 -8.64 11.41 -35.23 -0.40 -9.04 15 15 C 0.46 7.99 2.33 37.16 0.09 8.08 15 16 F -0.19 -3.08 16.74 2.25 0.04 -3.04 15 17 F -0.18 -3.26 15.74 2.25 0.04 -3.22 15 18 F -0.17 -3.07 15.63 2.25 0.04 -3.03 15 19 C 0.15 3.28 5.97 -2.53 -0.02 3.26 15 20 H 0.25 7.03 8.31 -40.82 -0.34 6.69 15 21 H 0.05 1.20 7.55 -51.93 -0.39 0.81 15 22 H 0.05 1.41 7.36 -51.93 -0.38 1.02 15 23 H 0.07 1.33 7.44 -51.93 -0.39 0.94 15 24 H 0.07 1.17 8.05 -51.93 -0.42 0.75 15 25 H 0.08 1.35 7.81 -51.93 -0.41 0.95 15 26 H 0.05 0.66 7.85 -51.93 -0.41 0.25 15 27 H 0.38 3.87 9.12 45.56 0.42 4.29 15 28 H 0.06 1.33 7.48 -51.93 -0.39 0.95 15 29 H 0.03 0.64 7.36 -51.93 -0.38 0.26 15 LS Contribution 251.32 15.07 3.79 3.79 Total: -1.00 -29.92 251.32 -3.99 -33.91 By element: Atomic # 1 Polarization: 1.76 SS G_CDS: -2.29 Total: -0.53 kcal Atomic # 6 Polarization: 5.88 SS G_CDS: -0.17 Total: 5.72 kcal Atomic # 7 Polarization: -41.28 SS G_CDS: 0.00 Total: -41.28 kcal Atomic # 8 Polarization: -8.64 SS G_CDS: -0.40 Total: -9.04 kcal Atomic # 9 Polarization: -9.40 SS G_CDS: 0.11 Total: -9.29 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -29.92 -3.99 -33.91 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886794691.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -144.711 kcal (2) G-P(sol) polarization free energy of solvation -29.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds