Wall clock time and date at job start Sun Mar 29 2020 22:22:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86799 * 120.00074 * 2 1 4 4 H 1.48503 * 109.46878 * 274.98467 * 3 2 1 5 5 H 1.48504 * 109.47221 * 34.98160 * 3 2 1 6 6 H 1.48501 * 109.47521 * 154.98239 * 3 2 1 7 7 C 1.38811 * 120.00304 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00503 * 186.83161 * 7 2 1 9 9 N 1.36946 * 119.99781 * 6.83063 * 7 2 1 10 10 C 1.47016 * 125.64726 * 353.84691 * 9 7 2 11 11 C 1.54318 * 107.27009 * 181.09603 * 10 9 7 12 12 C 1.55158 * 102.94330 * 22.19621 * 11 10 9 13 13 C 1.52996 * 111.00321 * 82.57373 * 12 11 10 14 14 O 1.42907 * 109.46923 * 186.35270 * 13 12 11 15 15 C 1.53003 * 111.03440 * 206.41089 * 12 11 10 16 16 F 1.39908 * 109.47187 * 296.79288 * 15 12 11 17 17 F 1.39898 * 109.47467 * 56.79362 * 15 12 11 18 18 F 1.39908 * 109.46642 * 176.79570 * 15 12 11 19 19 C 1.47420 * 125.64617 * 173.89067 * 9 7 2 20 20 H 0.97004 * 120.00226 * 0.02562 * 1 2 3 21 21 H 1.08997 * 109.88733 * 300.51415 * 10 9 7 22 22 H 1.09000 * 109.88381 * 61.52343 * 10 9 7 23 23 H 1.08998 * 110.72313 * 263.82785 * 11 10 9 24 24 H 1.09004 * 110.72272 * 140.56181 * 11 10 9 25 25 H 1.09001 * 109.47033 * 306.35019 * 13 12 11 26 26 H 1.09002 * 109.47568 * 66.35247 * 13 12 11 27 27 H 0.96693 * 113.99965 * 179.97438 * 14 13 12 28 28 H 1.09007 * 110.36996 * 36.99904 * 19 9 7 29 29 H 1.08999 * 110.46265 * 274.71782 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.3923 2.1072 -1.3948 5 1 1.5042 2.6200 0.8027 6 1 3.5964 1.4121 0.5921 7 6 2.0102 -1.2021 0.0005 8 1 3.0844 -1.2054 0.1118 9 7 1.3328 -2.3840 -0.1400 10 6 -0.1292 -2.5350 -0.1717 11 6 -0.4312 -4.0413 -0.3168 12 6 0.8670 -4.7083 0.2099 13 6 0.8581 -4.7952 1.7373 14 8 2.1238 -5.2760 2.1945 15 6 1.0661 -6.0911 -0.4141 16 9 0.0154 -6.9315 -0.0304 17 9 1.0854 -5.9754 -1.8081 18 9 2.2795 -6.6309 0.0260 19 6 1.9489 -3.7155 -0.2836 20 1 -0.4851 0.8401 -0.0004 21 1 -0.5611 -2.1580 0.7554 22 1 -0.5400 -1.9887 -1.0207 23 1 -0.6020 -4.3016 -1.3614 24 1 -1.2864 -4.3242 0.2969 25 1 0.6721 -3.8063 2.1564 26 1 0.0723 -5.4793 2.0578 27 1 2.1902 -5.3561 3.1558 28 1 2.8424 -3.7891 0.3365 29 1 2.1952 -3.9108 -1.3273 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000886794691.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:22:21 Heat of formation + Delta-G solvation = -199.531131 kcal Electronic energy + Delta-G solvation = -18536.664589 eV Core-core repulsion = 15044.693993 eV Total energy + Delta-G solvation = -3491.970596 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 239.087 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -51.05516 -48.57676 -48.46157 -40.02757 -37.23807 -34.84385 -32.08800 -30.29757 -27.45288 -26.74444 -25.19526 -22.25765 -21.14694 -19.43577 -19.32884 -18.93571 -18.19163 -18.03732 -16.70743 -16.23377 -15.62368 -15.39932 -15.33908 -15.17313 -14.97486 -14.67377 -14.62491 -14.45211 -14.09914 -13.83241 -13.39915 -12.94432 -12.86415 -12.60901 -12.23903 -12.02462 -11.95723 -11.73514 -11.65450 -10.92191 -10.70978 -8.95120 -7.89357 -5.24181 1.47607 1.49295 1.57945 1.74971 2.47245 2.74876 2.79329 3.04926 3.31174 3.35220 3.67309 3.79713 3.84576 4.13746 4.37751 4.46286 4.57074 4.72757 4.81681 4.91543 4.93640 5.42582 5.56552 5.70136 6.14955 6.88977 7.06942 7.70605 8.34787 9.21790 Molecular weight = 239.09amu Principal moments of inertia in cm(-1) A = 0.040387 B = 0.007846 C = 0.007577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.131366 B = 3567.646928 C = 3694.721697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.057 4.057 3 Si 0.977 3.023 4 H -0.288 1.288 5 H -0.292 1.292 6 H -0.269 1.269 7 C -0.246 4.246 8 H 0.080 0.920 9 N -0.618 5.618 10 C 0.187 3.813 11 C -0.119 4.119 12 C -0.118 4.118 13 C 0.104 3.896 14 O -0.577 6.577 15 C 0.473 3.527 16 F -0.179 7.179 17 F -0.188 7.188 18 F -0.175 7.175 19 C 0.152 3.848 20 H 0.250 0.750 21 H 0.024 0.976 22 H 0.020 0.980 23 H 0.082 0.918 24 H 0.106 0.894 25 H 0.057 0.943 26 H 0.079 0.921 27 H 0.400 0.600 28 H 0.055 0.945 29 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.311 -11.767 2.900 12.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.251 4.251 3 Si 0.806 3.194 4 H -0.216 1.216 5 H -0.219 1.219 6 H -0.194 1.194 7 C -0.374 4.374 8 H 0.098 0.902 9 N -0.344 5.344 10 C 0.062 3.938 11 C -0.157 4.157 12 C -0.121 4.121 13 C 0.026 3.974 14 O -0.385 6.385 15 C 0.419 3.581 16 F -0.161 7.161 17 F -0.169 7.169 18 F -0.156 7.156 19 C 0.027 3.973 20 H 0.059 0.941 21 H 0.043 0.957 22 H 0.038 0.962 23 H 0.101 0.899 24 H 0.124 0.876 25 H 0.076 0.924 26 H 0.097 0.903 27 H 0.250 0.750 28 H 0.073 0.927 29 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -0.217 -11.590 2.275 11.813 hybrid contribution 0.217 0.875 0.293 0.948 sum 0.000 -10.715 2.568 11.018 Atomic orbital electron populations 1.70133 1.06157 1.25571 1.57568 1.25600 0.96610 1.00768 1.02078 0.85081 0.77887 0.79218 0.77251 1.21551 1.21876 1.19379 1.19395 0.91605 0.83491 1.42953 0.90182 1.44615 1.02305 1.01508 1.85960 1.20957 0.83708 0.90243 0.98905 1.22921 0.94807 0.95787 1.02180 1.23030 1.01401 0.89887 0.97755 1.21815 0.86581 0.99550 0.89488 1.86468 1.34242 1.88605 1.29217 1.20087 0.73963 0.88118 0.75948 1.93145 1.57848 1.74145 1.90915 1.93142 1.96247 1.96237 1.31276 1.93194 1.45508 1.87734 1.89154 1.21461 0.94163 0.84164 0.97553 0.94106 0.95735 0.96196 0.89912 0.87579 0.92441 0.90337 0.74989 0.92700 0.95715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.03 10.36 21.65 0.22 -54.80 15 2 C -0.06 -3.17 5.48 84.86 0.47 -2.70 15 3 Si 0.98 44.98 29.56 68.60 2.03 47.01 15 4 H -0.29 -13.21 7.11 99.48 0.71 -12.51 15 5 H -0.29 -13.41 7.11 99.48 0.71 -12.70 15 6 H -0.27 -11.78 7.11 99.48 0.71 -11.07 15 7 C -0.25 -13.62 10.26 84.03 0.86 -12.75 15 8 H 0.08 4.31 7.84 -2.91 -0.02 4.28 15 9 N -0.62 -31.17 3.38 -692.02 -2.34 -33.51 15 10 C 0.19 8.76 5.00 86.73 0.43 9.20 15 11 C -0.12 -4.13 5.74 31.78 0.18 -3.95 15 12 C -0.12 -4.05 0.32 -50.79 -0.02 -4.06 15 13 C 0.10 3.09 5.89 71.98 0.42 3.51 15 14 O -0.58 -16.32 11.41 -148.98 -1.70 -18.02 15 15 C 0.47 15.04 2.33 71.98 0.17 15.21 15 16 F -0.18 -5.12 16.74 44.97 0.75 -4.37 15 17 F -0.19 -6.21 15.74 44.97 0.71 -5.50 15 18 F -0.17 -5.75 15.63 44.97 0.70 -5.05 15 19 C 0.15 6.44 5.97 86.86 0.52 6.96 15 20 H 0.25 14.11 8.31 -92.71 -0.77 13.33 15 21 H 0.02 1.25 7.55 -2.39 -0.02 1.23 15 22 H 0.02 1.06 7.36 -2.39 -0.02 1.04 15 23 H 0.08 2.76 7.44 -2.39 -0.02 2.74 15 24 H 0.11 3.03 8.05 -2.39 -0.02 3.01 15 25 H 0.06 1.95 7.81 -2.39 -0.02 1.93 15 26 H 0.08 1.88 7.85 -2.39 -0.02 1.86 15 27 H 0.40 7.14 9.12 -74.06 -0.68 6.47 15 28 H 0.05 2.37 7.48 -2.38 -0.02 2.35 15 29 H 0.03 1.08 7.36 -2.39 -0.02 1.06 15 Total: -1.00 -63.72 251.32 3.92 -59.80 By element: Atomic # 1 Polarization: 2.53 SS G_CDS: 0.51 Total: 3.04 kcal Atomic # 6 Polarization: 8.37 SS G_CDS: 3.04 Total: 11.41 kcal Atomic # 7 Polarization: -86.20 SS G_CDS: -2.12 Total: -88.32 kcal Atomic # 8 Polarization: -16.32 SS G_CDS: -1.70 Total: -18.02 kcal Atomic # 9 Polarization: -17.08 SS G_CDS: 2.16 Total: -14.92 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -63.72 3.92 -59.80 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886794691.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.735 kcal (2) G-P(sol) polarization free energy of solvation -63.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -203.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -199.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds