Wall clock time and date at job start Sun Mar 29 2020 22:15:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 S 1.81400 * 109.47377 * 348.43104 * 3 2 1 5 5 C 1.81400 * 102.99815 * 180.02562 * 4 3 2 6 6 C 1.50700 * 109.46615 * 179.97438 * 5 4 3 7 7 O 1.21294 * 120.00575 * 0.02562 * 6 5 4 8 8 N 1.34783 * 120.00005 * 179.97438 * 6 5 4 9 9 C 1.37091 * 120.00404 * 180.02562 * 8 6 5 10 10 H 1.08004 * 119.99912 * 223.28825 * 9 8 6 11 11 C 1.38950 * 119.99926 * 43.28686 * 9 8 6 12 12 N 1.31414 * 120.00199 * 23.00091 * 11 9 8 13 13 Si 1.86806 * 119.99825 * 203.00075 * 11 9 8 14 14 H 1.48500 * 109.46894 * 180.02562 * 13 11 9 15 15 H 1.48503 * 109.47049 * 300.00052 * 13 11 9 16 16 H 1.48502 * 109.47157 * 60.00072 * 13 11 9 17 17 C 1.46508 * 119.99414 * 0.02562 * 8 6 5 18 18 C 1.53002 * 117.49453 * 187.81110 * 17 8 6 19 19 C 1.53004 * 60.00148 * 252.51359 * 18 17 8 20 20 H 4.62829 * 6.06385 * 179.97438 * 4 1 2 21 21 H 1.09003 * 109.46817 * 228.43171 * 3 2 1 22 22 H 1.08998 * 109.46991 * 108.43680 * 3 2 1 23 23 H 1.08999 * 109.46739 * 60.00524 * 5 4 3 24 24 H 1.08999 * 109.47216 * 299.99611 * 5 4 3 25 25 H 0.96999 * 119.99416 * 6.13365 * 12 11 9 26 26 H 1.08999 * 115.55190 * 333.52073 * 17 8 6 27 27 H 1.08996 * 117.49764 * 0.02562 * 18 17 8 28 28 H 1.08999 * 117.49659 * 145.02224 * 18 17 8 29 29 H 1.08998 * 117.50051 * 252.51877 * 19 18 17 30 30 H 1.09000 * 117.51908 * 107.48332 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 16 3.2516 -1.6746 0.3430 5 6 5.0539 -1.4732 0.3027 6 6 5.7137 -2.8003 0.5752 7 8 5.0350 -3.7853 0.7763 8 7 7.0582 -2.8932 0.5945 9 6 7.6586 -4.1006 0.8418 10 1 8.5070 -4.1554 1.5078 11 6 7.1755 -5.2538 0.2356 12 7 6.4812 -5.1698 -0.8770 13 14 7.5129 -6.9235 1.0023 14 1 6.8948 -7.9852 0.1681 15 1 8.9792 -7.1457 1.0790 16 1 6.9336 -6.9669 2.3690 17 6 7.8781 -1.7036 0.3511 18 6 9.3878 -1.9042 0.2041 19 6 8.8218 -1.2553 1.4689 20 1 -1.0497 -0.0005 0.0003 21 1 3.0090 0.6827 0.7689 22 1 3.0092 0.3258 -0.9749 23 1 5.3562 -0.7544 1.0643 24 1 5.3572 -1.1111 -0.6796 25 1 6.3813 -4.3142 -1.3228 26 1 7.4117 -0.9273 -0.2555 27 1 9.7709 -2.9211 0.2881 28 1 9.9149 -1.2598 -0.4994 29 1 8.9765 -0.1840 1.5974 30 1 8.8323 -1.8451 2.3855 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000888555806.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:15:37 Heat of formation + Delta-G solvation = 58.539442 kcal Electronic energy + Delta-G solvation = -14602.907154 eV Core-core repulsion = 12106.736949 eV Total energy + Delta-G solvation = -2496.170205 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.85213 -36.28076 -33.97668 -33.06331 -31.17994 -29.21277 -28.28164 -24.39704 -21.86652 -21.45683 -19.73550 -18.40907 -16.82434 -16.48301 -15.83870 -14.94241 -14.72838 -14.26756 -14.21562 -13.95810 -13.65665 -13.15031 -12.75979 -12.47814 -11.73425 -11.23193 -10.97756 -10.75607 -10.46673 -10.35080 -10.31447 -10.09143 -9.94992 -9.75579 -9.45972 -8.75377 -8.21978 -7.42545 -7.28508 -6.41629 -3.94698 1.50139 2.78110 2.79644 3.23675 3.40889 3.52622 3.67032 3.78147 4.26045 4.27679 4.56164 4.71176 5.18507 5.19102 5.32208 5.38116 5.43076 5.52430 5.61911 5.66462 5.84763 5.87705 6.09056 6.26976 6.58278 6.81299 7.53633 7.81642 8.33771 8.70190 9.07782 9.48745 9.97312 10.86527 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.025198 B = 0.007398 C = 0.005984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.943194 B = 3784.064295 C = 4677.938186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.168 4.168 3 C -0.010 4.010 4 S -0.160 6.160 5 C -0.116 4.116 6 C 0.473 3.527 7 O -0.516 6.516 8 N -0.425 5.425 9 C -0.431 4.431 10 H 0.073 0.927 11 C 0.041 3.959 12 N -0.839 5.839 13 Si 1.075 2.925 14 H -0.281 1.281 15 H -0.289 1.289 16 H -0.284 1.284 17 C 0.063 3.937 18 C -0.171 4.171 19 C -0.201 4.201 20 H 0.222 0.778 21 H 0.099 0.901 22 H 0.099 0.901 23 H 0.094 0.906 24 H 0.091 0.909 25 H 0.270 0.730 26 H 0.103 0.897 27 H 0.109 0.891 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.781 11.508 0.809 11.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.169 4.169 3 C -0.156 4.156 4 S 0.069 5.931 5 C -0.268 4.268 6 C 0.259 3.741 7 O -0.393 6.393 8 N -0.146 5.146 9 C -0.557 4.557 10 H 0.090 0.910 11 C -0.173 4.173 12 N -0.469 5.469 13 Si 0.902 3.098 14 H -0.206 1.206 15 H -0.215 1.215 16 H -0.211 1.211 17 C -0.043 4.043 18 C -0.209 4.209 19 C -0.240 4.240 20 H 0.239 0.761 21 H 0.117 0.883 22 H 0.118 0.882 23 H 0.113 0.887 24 H 0.110 0.890 25 H 0.081 0.919 26 H 0.120 0.880 27 H 0.128 0.872 28 H 0.103 0.897 29 H 0.103 0.897 30 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -3.001 8.439 0.929 9.005 hybrid contribution 1.072 3.117 -0.154 3.299 sum -1.930 11.555 0.775 11.741 Atomic orbital electron populations 1.24795 0.95678 0.99580 1.00665 1.21846 0.93064 1.01189 1.00824 1.20316 0.88993 1.00951 1.05365 1.87920 1.03036 1.08012 1.94172 1.23672 0.95156 1.03027 1.04967 1.19241 0.83155 0.87958 0.83742 1.90668 1.61616 1.37084 1.49958 1.42859 1.02295 1.06564 1.62931 1.19756 1.19816 0.84240 1.31857 0.90964 1.26210 0.94154 1.03114 0.93827 1.70573 1.34095 1.29059 1.13146 0.83435 0.75534 0.74677 0.76141 1.20598 1.21526 1.21068 1.21813 0.89729 0.92142 1.00613 1.23091 0.95810 1.02780 0.99206 1.23268 1.06608 0.99584 0.94546 0.76139 0.88260 0.88243 0.88723 0.89015 0.91902 0.87956 0.87247 0.89686 0.89678 0.88869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.24 19.25 29.55 0.57 -1.67 16 2 C -0.17 -2.36 13.35 -37.12 -0.50 -2.86 16 3 C -0.01 -0.13 6.42 34.37 0.22 0.09 16 4 S -0.16 -3.05 20.83 -107.50 -2.24 -5.28 16 5 C -0.12 -2.20 4.99 36.01 0.18 -2.02 16 6 C 0.47 11.88 6.45 -10.98 -0.07 11.81 16 7 O -0.52 -15.38 13.71 5.54 0.08 -15.30 16 8 N -0.42 -10.44 2.61 -107.72 -0.28 -10.72 16 9 C -0.43 -11.73 7.75 -14.94 -0.12 -11.85 16 10 H 0.07 1.93 7.45 -52.48 -0.39 1.54 16 11 C 0.04 1.16 4.22 -17.47 -0.07 1.08 16 12 N -0.84 -25.58 12.34 55.50 0.68 -24.90 16 13 Si 1.08 25.71 29.98 -169.99 -5.10 20.61 16 14 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 15 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 16 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 17 C 0.06 1.21 5.98 -67.92 -0.41 0.81 16 18 C -0.17 -3.00 9.81 -26.73 -0.26 -3.26 16 19 C -0.20 -3.34 10.29 -26.73 -0.27 -3.62 16 20 H 0.22 1.73 7.80 -54.10 -0.42 1.31 16 21 H 0.10 1.15 8.14 -51.92 -0.42 0.72 16 22 H 0.10 1.18 8.14 -51.93 -0.42 0.75 16 23 H 0.09 1.54 8.11 -51.92 -0.42 1.12 16 24 H 0.09 1.54 7.57 -51.92 -0.39 1.14 16 25 H 0.27 8.32 7.41 -40.82 -0.30 8.02 16 26 H 0.10 1.69 6.82 -51.93 -0.35 1.33 16 27 H 0.11 2.17 6.84 -51.93 -0.36 1.82 16 28 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 29 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.09 1.70 8.14 -51.93 -0.42 1.27 16 LS Contribution 281.99 15.07 4.25 4.25 Total: -1.00 -34.05 281.99 -6.88 -40.93 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: -3.55 Total: 1.89 kcal Atomic # 6 Polarization: -10.76 SS G_CDS: -0.73 Total: -11.49 kcal Atomic # 7 Polarization: -36.02 SS G_CDS: 0.40 Total: -35.62 kcal Atomic # 8 Polarization: -15.38 SS G_CDS: 0.08 Total: -15.30 kcal Atomic # 14 Polarization: 25.71 SS G_CDS: -5.10 Total: 20.61 kcal Atomic # 16 Polarization: -3.05 SS G_CDS: -2.24 Total: -5.28 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -34.05 -6.88 -40.93 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888555806.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.471 kcal (2) G-P(sol) polarization free energy of solvation -34.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.932 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds