Wall clock time and date at job start Sun Mar 29 2020 22:15:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 S 1.81400 * 109.47377 * 348.43104 * 3 2 1 5 5 C 1.81400 * 102.99815 * 180.02562 * 4 3 2 6 6 C 1.50700 * 109.46615 * 179.97438 * 5 4 3 7 7 O 1.21294 * 120.00575 * 0.02562 * 6 5 4 8 8 N 1.34783 * 120.00005 * 179.97438 * 6 5 4 9 9 C 1.37091 * 120.00404 * 180.02562 * 8 6 5 10 10 H 1.08004 * 119.99912 * 223.28825 * 9 8 6 11 11 C 1.38950 * 119.99926 * 43.28686 * 9 8 6 12 12 N 1.31414 * 120.00199 * 23.00091 * 11 9 8 13 13 Si 1.86806 * 119.99825 * 203.00075 * 11 9 8 14 14 H 1.48500 * 109.46894 * 180.02562 * 13 11 9 15 15 H 1.48503 * 109.47049 * 300.00052 * 13 11 9 16 16 H 1.48502 * 109.47157 * 60.00072 * 13 11 9 17 17 C 1.46508 * 119.99414 * 0.02562 * 8 6 5 18 18 C 1.53002 * 117.49453 * 187.81110 * 17 8 6 19 19 C 1.53004 * 60.00148 * 252.51359 * 18 17 8 20 20 H 4.62829 * 6.06385 * 179.97438 * 4 1 2 21 21 H 1.09003 * 109.46817 * 228.43171 * 3 2 1 22 22 H 1.08998 * 109.46991 * 108.43680 * 3 2 1 23 23 H 1.08999 * 109.46739 * 60.00524 * 5 4 3 24 24 H 1.08999 * 109.47216 * 299.99611 * 5 4 3 25 25 H 0.96999 * 119.99416 * 6.13365 * 12 11 9 26 26 H 1.08999 * 115.55190 * 333.52073 * 17 8 6 27 27 H 1.08996 * 117.49764 * 0.02562 * 18 17 8 28 28 H 1.08999 * 117.49659 * 145.02224 * 18 17 8 29 29 H 1.08998 * 117.50051 * 252.51877 * 19 18 17 30 30 H 1.09000 * 117.51908 * 107.48332 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 16 3.2516 -1.6746 0.3430 5 6 5.0539 -1.4732 0.3027 6 6 5.7137 -2.8003 0.5752 7 8 5.0350 -3.7853 0.7763 8 7 7.0582 -2.8932 0.5945 9 6 7.6586 -4.1006 0.8418 10 1 8.5070 -4.1554 1.5078 11 6 7.1755 -5.2538 0.2356 12 7 6.4812 -5.1698 -0.8770 13 14 7.5129 -6.9235 1.0023 14 1 6.8948 -7.9852 0.1681 15 1 8.9792 -7.1457 1.0790 16 1 6.9336 -6.9669 2.3690 17 6 7.8781 -1.7036 0.3511 18 6 9.3878 -1.9042 0.2041 19 6 8.8218 -1.2553 1.4689 20 1 -1.0497 -0.0005 0.0003 21 1 3.0090 0.6827 0.7689 22 1 3.0092 0.3258 -0.9749 23 1 5.3562 -0.7544 1.0643 24 1 5.3572 -1.1111 -0.6796 25 1 6.3813 -4.3142 -1.3228 26 1 7.4117 -0.9273 -0.2555 27 1 9.7709 -2.9211 0.2881 28 1 9.9149 -1.2598 -0.4994 29 1 8.9765 -0.1840 1.5974 30 1 8.8323 -1.8451 2.3855 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000888555806.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:15:37 Heat of formation + Delta-G solvation = 37.007127 kcal Electronic energy + Delta-G solvation = -14603.840865 eV Core-core repulsion = 12106.736949 eV Total energy + Delta-G solvation = -2497.103916 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.67040 -37.95420 -35.05116 -34.92968 -33.05588 -30.83074 -29.39876 -26.40133 -23.29680 -23.01704 -21.59077 -19.52916 -18.66335 -18.11320 -17.32419 -16.57112 -16.42083 -15.65651 -15.49968 -15.34536 -15.23043 -14.81834 -14.33817 -13.99548 -13.39614 -13.11376 -12.69765 -12.31432 -12.00118 -11.93060 -11.81203 -11.60980 -11.35839 -11.32681 -10.74964 -10.70950 -10.17667 -9.36638 -8.75499 -8.56969 -6.09244 0.22075 1.46724 1.47918 1.59590 1.76150 1.81231 1.98937 2.22799 2.44134 2.87741 3.05480 3.29800 3.36383 3.79696 3.99153 4.09724 4.16962 4.23716 4.23833 4.33909 4.35487 4.82062 4.92687 5.01012 5.17816 5.40492 5.71072 6.14865 6.58252 6.76477 7.09383 7.46129 8.04790 8.68204 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.025198 B = 0.007398 C = 0.005984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.943194 B = 3784.064295 C = 4677.938186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.223 4.223 3 C 0.018 3.982 4 S -0.246 6.246 5 C -0.091 4.091 6 C 0.457 3.543 7 O -0.576 6.576 8 N -0.441 5.441 9 C -0.433 4.433 10 H 0.071 0.929 11 C -0.008 4.008 12 N -0.875 5.875 13 Si 1.113 2.887 14 H -0.288 1.288 15 H -0.254 1.254 16 H -0.288 1.288 17 C 0.034 3.966 18 C -0.169 4.169 19 C -0.175 4.175 20 H 0.258 0.742 21 H 0.123 0.877 22 H 0.119 0.881 23 H 0.126 0.874 24 H 0.116 0.884 25 H 0.255 0.745 26 H 0.136 0.864 27 H 0.078 0.922 28 H 0.121 0.879 29 H 0.130 0.870 30 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.413 14.191 1.019 14.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.225 4.225 3 C -0.129 4.129 4 S -0.018 6.018 5 C -0.242 4.242 6 C 0.246 3.754 7 O -0.458 6.458 8 N -0.162 5.162 9 C -0.560 4.560 10 H 0.088 0.912 11 C -0.215 4.215 12 N -0.507 5.507 13 Si 0.935 3.065 14 H -0.214 1.214 15 H -0.178 1.178 16 H -0.214 1.214 17 C -0.071 4.071 18 C -0.207 4.207 19 C -0.214 4.214 20 H 0.274 0.726 21 H 0.141 0.859 22 H 0.137 0.863 23 H 0.144 0.856 24 H 0.134 0.866 25 H 0.064 0.936 26 H 0.154 0.846 27 H 0.096 0.904 28 H 0.139 0.861 29 H 0.148 0.852 30 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -2.565 11.159 1.146 11.508 hybrid contribution 0.888 2.418 -0.167 2.581 sum -1.677 13.577 0.979 13.715 Atomic orbital electron populations 1.25787 0.96649 0.96801 0.98671 1.22284 0.93943 1.03428 1.02801 1.20270 0.88949 0.96468 1.07166 1.88180 1.04384 1.14543 1.94709 1.23379 0.93974 0.99641 1.07177 1.20209 0.83285 0.89605 0.82328 1.90624 1.63100 1.39724 1.52309 1.43086 1.02994 1.07452 1.62633 1.19891 1.19296 0.85793 1.31008 0.91174 1.27432 0.93759 1.06583 0.93683 1.70692 1.37146 1.28017 1.14854 0.82981 0.77386 0.71267 0.74885 1.21389 1.17827 1.21405 1.22203 0.90185 0.91122 1.03541 1.23130 0.94599 1.02104 1.00860 1.23293 1.03627 1.01675 0.92767 0.72622 0.85885 0.86276 0.85560 0.86604 0.93584 0.84626 0.90388 0.86064 0.85245 0.91021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.38 19.25 74.32 1.43 -1.95 16 2 C -0.22 -5.84 13.35 31.13 0.42 -5.42 16 3 C 0.02 0.45 6.42 70.18 0.45 0.90 16 4 S -0.25 -9.38 20.83 -56.49 -1.18 -10.55 16 5 C -0.09 -3.30 4.99 71.24 0.36 -2.95 16 6 C 0.46 23.26 6.45 87.66 0.57 23.83 16 7 O -0.58 -35.70 13.71 -3.07 -0.04 -35.74 16 8 N -0.44 -21.68 2.61 -613.09 -1.60 -23.28 16 9 C -0.43 -24.04 7.75 84.04 0.65 -23.39 16 10 H 0.07 3.81 7.45 -2.91 -0.02 3.79 16 11 C -0.01 -0.46 4.22 84.93 0.36 -0.10 16 12 N -0.87 -55.42 12.34 21.66 0.27 -55.15 16 13 Si 1.11 53.07 29.98 68.60 2.06 55.12 16 14 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 15 H -0.25 -10.54 7.11 99.48 0.71 -9.84 16 16 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 17 C 0.03 1.23 5.98 44.99 0.27 1.50 16 18 C -0.17 -5.53 9.81 30.60 0.30 -5.23 16 19 C -0.18 -5.25 10.29 30.60 0.31 -4.94 16 20 H 0.26 3.04 7.80 -4.43 -0.03 3.01 16 21 H 0.12 2.46 8.14 -2.39 -0.02 2.44 16 22 H 0.12 2.48 8.14 -2.39 -0.02 2.46 16 23 H 0.13 3.73 8.11 -2.39 -0.02 3.71 16 24 H 0.12 3.61 7.57 -2.39 -0.02 3.59 16 25 H 0.25 16.36 7.41 -92.71 -0.69 15.67 16 26 H 0.14 3.95 6.82 -2.39 -0.02 3.93 16 27 H 0.08 3.06 6.84 -2.39 -0.02 3.05 16 28 H 0.12 3.07 8.14 -2.39 -0.02 3.05 16 29 H 0.13 2.79 8.14 -2.39 -0.02 2.77 16 30 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 Total: -1.00 -79.33 281.99 5.83 -73.50 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: 1.21 Total: 13.86 kcal Atomic # 6 Polarization: -22.87 SS G_CDS: 5.11 Total: -17.76 kcal Atomic # 7 Polarization: -77.10 SS G_CDS: -1.33 Total: -78.43 kcal Atomic # 8 Polarization: -35.70 SS G_CDS: -0.04 Total: -35.74 kcal Atomic # 14 Polarization: 53.07 SS G_CDS: 2.06 Total: 55.12 kcal Atomic # 16 Polarization: -9.38 SS G_CDS: -1.18 Total: -10.55 kcal Total: -79.33 5.83 -73.50 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888555806.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.512 kcal (2) G-P(sol) polarization free energy of solvation -79.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.505 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds