Wall clock time and date at job start Sun Mar 29 2020 22:18:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34771 * 120.00359 * 2 1 4 4 O 1.21310 * 120.00448 * 174.66924 * 3 2 1 5 5 C 1.50707 * 120.00017 * 354.94999 * 3 2 1 6 6 C 1.52999 * 109.47227 * 179.72104 * 5 3 2 7 7 C 1.50703 * 109.46710 * 179.97438 * 6 5 3 8 8 H 1.07999 * 120.00414 * 359.97438 * 7 6 5 9 9 C 1.37879 * 119.99490 * 180.02562 * 7 6 5 10 10 N 1.31510 * 120.00457 * 359.97438 * 9 7 6 11 11 Si 1.86804 * 119.99671 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47278 * 359.97438 * 11 9 7 13 13 H 1.48499 * 109.47168 * 119.99944 * 11 9 7 14 14 H 1.48498 * 109.46577 * 239.99363 * 11 9 7 15 15 C 1.40721 * 119.99752 * 180.02562 * 2 1 3 16 16 C 1.38802 * 122.62259 * 5.71708 * 15 2 1 17 17 C 1.33369 * 114.88772 * 180.02562 * 16 15 2 18 18 S 1.75851 * 109.71334 * 0.02562 * 17 16 15 19 19 C 1.33819 * 122.61990 * 185.43436 * 15 2 1 20 20 H 1.08998 * 109.46899 * 89.99375 * 1 2 3 21 21 H 1.08998 * 109.47381 * 209.99956 * 1 2 3 22 22 H 1.09005 * 109.46853 * 329.99885 * 1 2 3 23 23 H 1.08997 * 109.46627 * 299.72319 * 5 3 2 24 24 H 1.09000 * 109.46654 * 59.72105 * 5 3 2 25 25 H 1.08997 * 109.47064 * 300.00007 * 6 5 3 26 26 H 1.09001 * 109.46870 * 60.00083 * 6 5 3 27 27 H 0.96996 * 120.00430 * 179.97438 * 10 9 7 28 28 H 1.07998 * 122.55660 * 0.03287 * 16 15 2 29 29 H 1.08005 * 125.14052 * 180.02562 * 17 16 15 30 30 H 1.07999 * 125.20389 * 359.97438 * 19 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3481 1.1694 0.0976 5 6 1.3899 2.4698 -0.1149 6 6 2.3827 3.6335 -0.0833 7 6 1.6336 4.9360 -0.1988 8 1 0.5571 4.9340 -0.2865 9 6 2.3226 6.1303 -0.1937 10 7 3.6334 6.1328 -0.0874 11 14 1.3941 7.7449 -0.3361 12 1 -0.0616 7.4711 -0.4422 13 1 1.6558 8.5744 0.8675 14 1 1.8501 8.4728 -1.5475 15 6 2.1686 -1.2187 -0.0005 16 6 1.5353 -2.4483 -0.1176 17 6 2.3506 -3.5035 -0.0996 18 16 4.0154 -2.9640 0.0733 19 6 3.5010 -1.2825 0.1062 20 1 -0.3633 0.0001 -1.0277 21 1 -0.3634 -0.8900 0.5138 22 1 -0.3633 0.8900 0.5139 23 1 0.8369 2.4892 -1.0540 24 1 0.6938 2.5633 0.7187 25 1 2.9356 3.6139 0.8558 26 1 3.0788 3.5399 -0.9168 27 1 4.1182 6.9729 -0.0842 28 1 0.4640 -2.5432 -0.2158 29 1 2.0360 -4.5337 -0.1792 30 1 4.1594 -0.4317 0.2009 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892555005.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:12 Heat of formation + Delta-G solvation = 2.945739 kcal Electronic energy + Delta-G solvation = -14454.153249 eV Core-core repulsion = 11955.572321 eV Total energy + Delta-G solvation = -2498.580928 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.30396 -37.39883 -34.60156 -33.53041 -31.12950 -29.34064 -26.61084 -25.76276 -24.09736 -21.74547 -19.55464 -18.52461 -17.85022 -16.79484 -16.07161 -15.71936 -15.20818 -14.49618 -14.05662 -13.61756 -13.15897 -12.85262 -12.79113 -12.53535 -12.23634 -12.21067 -12.12443 -11.16364 -10.97925 -10.86729 -10.60704 -10.03606 -9.88837 -9.65592 -9.16874 -8.98698 -8.65821 -8.36249 -7.62655 -5.99595 -4.04331 1.11959 1.75055 2.05851 2.54476 3.22681 3.30668 3.31847 3.38216 3.41189 4.44212 4.84518 5.00769 5.20441 5.23782 5.35704 5.38634 5.62628 5.80219 5.87300 6.05061 6.11412 6.18227 6.32503 6.79155 6.97497 7.55893 7.69980 7.79429 8.01808 8.32297 8.53868 9.03614 9.59647 11.11417 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.055987 B = 0.004796 C = 0.004439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.996224 B = 5836.431770 C = 6305.828872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.555 5.555 3 C 0.509 3.491 4 O -0.510 6.510 5 C -0.124 4.124 6 C 0.035 3.965 7 C -0.528 4.528 8 H 0.057 0.943 9 C 0.059 3.941 10 N -0.889 5.889 11 Si 0.893 3.107 12 H -0.273 1.273 13 H -0.284 1.284 14 H -0.284 1.284 15 C 0.123 3.877 16 C -0.149 4.149 17 C -0.206 4.206 18 S 0.085 5.915 19 C -0.242 4.242 20 H 0.062 0.938 21 H 0.073 0.927 22 H 0.085 0.915 23 H 0.084 0.916 24 H 0.083 0.917 25 H 0.025 0.975 26 H 0.025 0.975 27 H 0.261 0.739 28 H 0.142 0.858 29 H 0.164 0.836 30 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.374 -17.807 0.108 18.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.282 5.282 3 C 0.301 3.699 4 O -0.385 6.385 5 C -0.164 4.164 6 C -0.002 4.002 7 C -0.566 4.566 8 H 0.075 0.925 9 C -0.143 4.143 10 N -0.528 5.528 11 Si 0.721 3.279 12 H -0.197 1.197 13 H -0.210 1.210 14 H -0.210 1.210 15 C 0.019 3.981 16 C -0.182 4.182 17 C -0.342 4.342 18 S 0.345 5.655 19 C -0.380 4.380 20 H 0.081 0.919 21 H 0.091 0.909 22 H 0.104 0.896 23 H 0.102 0.898 24 H 0.102 0.898 25 H 0.043 0.957 26 H 0.043 0.957 27 H 0.071 0.929 28 H 0.159 0.841 29 H 0.182 0.818 30 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -4.225 -18.322 0.257 18.804 hybrid contribution -1.983 1.508 -0.204 2.500 sum -6.208 -16.814 0.053 17.923 Atomic orbital electron populations 1.21937 0.78391 1.03894 1.02579 1.45740 1.07215 1.03711 1.71486 1.21862 0.88355 0.85185 0.74510 1.90445 1.14841 1.86020 1.47225 1.21930 1.00800 0.91059 1.02615 1.18944 0.93196 0.89334 0.98742 1.21222 0.93350 0.90981 1.51033 0.92487 1.25021 0.94820 0.99259 0.95220 1.69999 1.06317 1.26549 1.49888 0.86528 0.79972 0.83756 0.77669 1.19722 1.20986 1.20992 1.16981 0.90993 0.86231 1.03853 1.19841 1.01142 0.90441 1.06792 1.25331 0.96384 1.02475 1.09981 1.84212 1.07647 1.00495 1.73135 1.26571 0.98764 0.99788 1.12914 0.91903 0.90853 0.89606 0.89795 0.89833 0.95692 0.95697 0.92943 0.84065 0.81813 0.78043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.81 9.70 59.85 0.58 1.39 16 2 N -0.56 -8.72 3.12 -122.02 -0.38 -9.10 16 3 C 0.51 9.99 7.63 -10.98 -0.08 9.91 16 4 O -0.51 -11.76 12.76 5.53 0.07 -11.69 16 5 C -0.12 -2.48 4.32 -27.88 -0.12 -2.60 16 6 C 0.04 0.94 4.26 -27.88 -0.12 0.82 16 7 C -0.53 -14.73 9.11 -34.44 -0.31 -15.05 16 8 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 10 N -0.89 -27.17 13.29 55.43 0.74 -26.44 16 11 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 12 H -0.27 -6.31 7.11 56.52 0.40 -5.90 16 13 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 14 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 15 C 0.12 1.90 6.41 -85.12 -0.55 1.36 16 16 C -0.15 -1.78 9.27 -41.07 -0.38 -2.16 16 17 C -0.21 -2.23 11.22 29.03 0.33 -1.91 16 18 S 0.08 1.07 23.33 -107.50 -2.51 -1.44 16 19 C -0.24 -3.99 10.05 29.18 0.29 -3.70 16 20 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 21 H 0.07 0.62 6.72 -51.93 -0.35 0.27 16 22 H 0.09 0.88 6.47 -51.93 -0.34 0.54 16 23 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 24 H 0.08 1.49 7.23 -51.93 -0.38 1.12 16 25 H 0.02 0.72 8.10 -51.93 -0.42 0.30 16 26 H 0.02 0.72 8.10 -51.93 -0.42 0.30 16 27 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 28 H 0.14 1.30 6.84 -52.49 -0.36 0.94 16 29 H 0.16 1.26 8.06 -52.48 -0.42 0.83 16 30 H 0.20 3.88 5.28 -52.54 -0.28 3.61 16 LS Contribution 269.90 15.07 4.07 4.07 Total: -1.00 -32.91 269.90 -6.84 -39.75 By element: Atomic # 1 Polarization: 2.14 SS G_CDS: -3.35 Total: -1.21 kcal Atomic # 6 Polarization: -9.89 SS G_CDS: -0.46 Total: -10.35 kcal Atomic # 7 Polarization: -35.89 SS G_CDS: 0.36 Total: -35.54 kcal Atomic # 8 Polarization: -11.76 SS G_CDS: 0.07 Total: -11.69 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: 1.07 SS G_CDS: -2.51 Total: -1.44 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -32.91 -6.84 -39.75 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892555005.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.700 kcal (2) G-P(sol) polarization free energy of solvation -32.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.754 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds