Wall clock time and date at job start Sun Mar 29 2020 22:18:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34771 * 120.00359 * 2 1 4 4 O 1.21310 * 120.00448 * 174.66924 * 3 2 1 5 5 C 1.50707 * 120.00017 * 354.94999 * 3 2 1 6 6 C 1.52999 * 109.47227 * 179.72104 * 5 3 2 7 7 C 1.50703 * 109.46710 * 179.97438 * 6 5 3 8 8 H 1.07999 * 120.00414 * 359.97438 * 7 6 5 9 9 C 1.37879 * 119.99490 * 180.02562 * 7 6 5 10 10 N 1.31510 * 120.00457 * 359.97438 * 9 7 6 11 11 Si 1.86804 * 119.99671 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47278 * 359.97438 * 11 9 7 13 13 H 1.48499 * 109.47168 * 119.99944 * 11 9 7 14 14 H 1.48498 * 109.46577 * 239.99363 * 11 9 7 15 15 C 1.40721 * 119.99752 * 180.02562 * 2 1 3 16 16 C 1.38802 * 122.62259 * 5.71708 * 15 2 1 17 17 C 1.33369 * 114.88772 * 180.02562 * 16 15 2 18 18 S 1.75851 * 109.71334 * 0.02562 * 17 16 15 19 19 C 1.33819 * 122.61990 * 185.43436 * 15 2 1 20 20 H 1.08998 * 109.46899 * 89.99375 * 1 2 3 21 21 H 1.08998 * 109.47381 * 209.99956 * 1 2 3 22 22 H 1.09005 * 109.46853 * 329.99885 * 1 2 3 23 23 H 1.08997 * 109.46627 * 299.72319 * 5 3 2 24 24 H 1.09000 * 109.46654 * 59.72105 * 5 3 2 25 25 H 1.08997 * 109.47064 * 300.00007 * 6 5 3 26 26 H 1.09001 * 109.46870 * 60.00083 * 6 5 3 27 27 H 0.96996 * 120.00430 * 179.97438 * 10 9 7 28 28 H 1.07998 * 122.55660 * 0.03287 * 16 15 2 29 29 H 1.08005 * 125.14052 * 180.02562 * 17 16 15 30 30 H 1.07999 * 125.20389 * 359.97438 * 19 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3481 1.1694 0.0976 5 6 1.3899 2.4698 -0.1149 6 6 2.3827 3.6335 -0.0833 7 6 1.6336 4.9360 -0.1988 8 1 0.5571 4.9340 -0.2865 9 6 2.3226 6.1303 -0.1937 10 7 3.6334 6.1328 -0.0874 11 14 1.3941 7.7449 -0.3361 12 1 -0.0616 7.4711 -0.4422 13 1 1.6558 8.5744 0.8675 14 1 1.8501 8.4728 -1.5475 15 6 2.1686 -1.2187 -0.0005 16 6 1.5353 -2.4483 -0.1176 17 6 2.3506 -3.5035 -0.0996 18 16 4.0154 -2.9640 0.0733 19 6 3.5010 -1.2825 0.1062 20 1 -0.3633 0.0001 -1.0277 21 1 -0.3634 -0.8900 0.5138 22 1 -0.3633 0.8900 0.5139 23 1 0.8369 2.4892 -1.0540 24 1 0.6938 2.5633 0.7187 25 1 2.9356 3.6139 0.8558 26 1 3.0788 3.5399 -0.9168 27 1 4.1182 6.9729 -0.0842 28 1 0.4640 -2.5432 -0.2158 29 1 2.0360 -4.5337 -0.1792 30 1 4.1594 -0.4317 0.2009 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892555005.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:11 Heat of formation + Delta-G solvation = -18.597542 kcal Electronic energy + Delta-G solvation = -14455.087436 eV Core-core repulsion = 11955.572321 eV Total energy + Delta-G solvation = -2499.515115 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.63905 -38.67069 -35.87666 -35.54041 -33.02885 -30.45822 -28.16467 -27.14940 -25.43173 -23.48059 -20.92669 -19.83769 -18.95357 -18.57751 -17.54954 -17.08474 -16.53845 -16.46039 -15.28148 -15.05622 -14.54273 -14.19973 -13.99016 -13.89240 -13.72398 -13.49297 -13.15641 -13.04118 -12.85306 -12.43994 -11.97045 -11.84237 -11.61031 -11.28389 -11.00626 -10.58735 -10.53816 -9.66995 -8.75640 -8.19043 -6.33275 0.08569 0.72085 1.05990 1.26843 1.42747 1.44047 1.57347 1.99963 2.07249 2.42932 3.14618 3.65702 4.06267 4.24059 4.32273 4.41619 4.45113 4.65927 4.78809 4.80887 4.91024 5.00467 5.10508 5.25302 5.47957 5.58699 5.78223 5.83685 6.15027 6.29389 6.84964 7.08949 7.37393 8.94032 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.055987 B = 0.004796 C = 0.004439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.996224 B = 5836.431770 C = 6305.828872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.548 5.548 3 C 0.502 3.498 4 O -0.561 6.561 5 C -0.110 4.110 6 C 0.041 3.959 7 C -0.541 4.541 8 H 0.079 0.921 9 C -0.007 4.007 10 N -0.939 5.939 11 Si 0.975 3.025 12 H -0.250 1.250 13 H -0.281 1.281 14 H -0.282 1.282 15 C 0.116 3.884 16 C -0.156 4.156 17 C -0.180 4.180 18 S 0.101 5.899 19 C -0.294 4.294 20 H 0.083 0.917 21 H 0.104 0.896 22 H 0.092 0.908 23 H 0.108 0.892 24 H 0.111 0.889 25 H -0.017 1.017 26 H -0.018 1.018 27 H 0.263 0.737 28 H 0.179 0.821 29 H 0.207 0.793 30 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.939 -19.418 -0.210 21.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.273 5.273 3 C 0.293 3.707 4 O -0.441 6.441 5 C -0.149 4.149 6 C 0.003 3.997 7 C -0.579 4.579 8 H 0.097 0.903 9 C -0.204 4.204 10 N -0.579 5.579 11 Si 0.798 3.202 12 H -0.174 1.174 13 H -0.207 1.207 14 H -0.207 1.207 15 C 0.011 3.989 16 C -0.188 4.188 17 C -0.316 4.316 18 S 0.362 5.638 19 C -0.432 4.432 20 H 0.102 0.898 21 H 0.123 0.877 22 H 0.111 0.889 23 H 0.126 0.874 24 H 0.129 0.871 25 H 0.001 0.999 26 H 0.000 1.000 27 H 0.071 0.929 28 H 0.196 0.804 29 H 0.224 0.776 30 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -7.848 -19.981 -0.062 21.467 hybrid contribution -0.837 1.879 -0.100 2.059 sum -8.685 -18.102 -0.162 20.078 Atomic orbital electron populations 1.22366 0.75050 1.05891 1.04565 1.45706 1.09167 1.02727 1.69676 1.21761 0.87760 0.86479 0.74672 1.90472 1.16921 1.87019 1.49646 1.21671 0.99312 0.88955 1.04971 1.18721 0.93712 0.92487 0.94757 1.21721 0.94463 0.91456 1.50223 0.90290 1.26143 0.95669 1.03976 0.94637 1.70184 1.08630 1.27754 1.51331 0.85260 0.79400 0.78009 0.77494 1.17356 1.20704 1.20748 1.17443 0.90855 0.87273 1.03363 1.20058 1.02997 0.88620 1.07094 1.25885 0.94530 1.04218 1.06980 1.84075 1.09428 0.97458 1.72887 1.26348 0.99528 1.01342 1.15991 0.89835 0.87729 0.88914 0.87389 0.87125 0.99885 0.99995 0.92872 0.80411 0.77583 0.81972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.12 9.70 127.77 1.24 2.36 16 2 N -0.55 -16.67 3.12 -658.34 -2.05 -18.72 16 3 C 0.50 20.33 7.63 87.66 0.67 21.00 16 4 O -0.56 -28.13 12.76 -3.12 -0.04 -28.17 16 5 C -0.11 -4.38 4.32 29.85 0.13 -4.25 16 6 C 0.04 2.28 4.26 29.85 0.13 2.40 16 7 C -0.54 -30.50 9.11 25.60 0.23 -30.26 16 8 H 0.08 4.01 7.74 -2.91 -0.02 3.99 16 9 C -0.01 -0.40 5.46 84.66 0.46 0.06 16 10 N -0.94 -59.71 13.29 21.45 0.28 -59.42 16 11 Si 0.97 44.01 29.54 68.60 2.03 46.03 16 12 H -0.25 -10.31 7.11 99.48 0.71 -9.61 16 13 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 14 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 15 C 0.12 3.46 6.41 36.84 0.24 3.70 16 16 C -0.16 -3.16 9.27 21.30 0.20 -2.96 16 17 C -0.18 -3.20 11.22 66.72 0.75 -2.46 16 18 S 0.10 2.46 23.33 -56.49 -1.32 1.14 16 19 C -0.29 -10.11 10.05 66.81 0.67 -9.44 16 20 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 21 H 0.10 1.26 6.72 -2.39 -0.02 1.25 16 22 H 0.09 1.56 6.47 -2.38 -0.02 1.55 16 23 H 0.11 3.77 8.14 -2.39 -0.02 3.75 16 24 H 0.11 3.79 7.23 -2.39 -0.02 3.77 16 25 H -0.02 -1.09 8.10 -2.39 -0.02 -1.11 16 26 H -0.02 -1.16 8.10 -2.39 -0.02 -1.18 16 27 H 0.26 15.60 8.31 -92.71 -0.77 14.83 16 28 H 0.18 2.25 6.84 -2.91 -0.02 2.23 16 29 H 0.21 1.92 8.06 -2.91 -0.02 1.89 16 30 H 0.16 6.97 5.28 -3.68 -0.02 6.95 16 Total: -1.00 -77.83 269.90 4.75 -73.08 By element: Atomic # 1 Polarization: 4.77 SS G_CDS: 1.14 Total: 5.91 kcal Atomic # 6 Polarization: -24.56 SS G_CDS: 4.71 Total: -19.85 kcal Atomic # 7 Polarization: -76.38 SS G_CDS: -1.77 Total: -78.15 kcal Atomic # 8 Polarization: -28.13 SS G_CDS: -0.04 Total: -28.17 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.03 kcal Atomic # 16 Polarization: 2.46 SS G_CDS: -1.32 Total: 1.14 kcal Total: -77.83 4.75 -73.08 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892555005.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.479 kcal (2) G-P(sol) polarization free energy of solvation -77.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds