Wall clock time and date at job start Sun Mar 29 2020 22:17:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46788 * 2 1 4 4 C 1.50694 * 109.47471 * 240.00083 * 2 1 3 5 5 H 1.08002 * 119.99889 * 241.29147 * 4 2 1 6 6 C 1.37874 * 120.00079 * 61.28711 * 4 2 1 7 7 N 1.31513 * 120.00268 * 9.10778 * 6 4 2 8 8 Si 1.86801 * 119.99774 * 189.10768 * 6 4 2 9 9 H 1.48504 * 109.47102 * 94.98269 * 8 6 4 10 10 H 1.48506 * 109.46960 * 214.97697 * 8 6 4 11 11 H 1.48494 * 109.47641 * 334.97916 * 8 6 4 12 12 C 1.50702 * 109.47171 * 119.99667 * 2 1 3 13 13 O 1.21309 * 119.99928 * 97.33919 * 12 2 1 14 14 N 1.34784 * 119.99715 * 277.34109 * 12 2 1 15 15 C 1.46496 * 120.00211 * 5.34199 * 14 12 2 16 16 C 1.40720 * 119.99418 * 185.34415 * 14 12 2 17 17 C 1.38807 * 122.61998 * 186.04593 * 16 14 12 18 18 C 1.33361 * 114.88848 * 180.02562 * 17 16 14 19 19 S 1.75859 * 109.71513 * 359.76108 * 18 17 16 20 20 C 1.33817 * 122.62663 * 6.07650 * 16 14 12 21 21 H 1.09000 * 109.46674 * 50.27345 * 1 2 3 22 22 H 1.09001 * 109.46659 * 170.27109 * 1 2 3 23 23 H 1.08999 * 109.47183 * 290.26688 * 1 2 3 24 24 H 0.97003 * 120.00231 * 179.97438 * 7 6 4 25 25 H 1.08998 * 109.47598 * 264.29584 * 15 14 12 26 26 H 1.08997 * 109.46808 * 24.29968 * 15 14 12 27 27 H 1.09003 * 109.46555 * 144.29521 * 15 14 12 28 28 H 1.07997 * 122.55405 * 0.02562 * 17 16 14 29 29 H 1.07999 * 125.14510 * 180.02562 * 18 17 16 30 30 H 1.07998 * 125.19663 * 359.95022 * 20 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2304 5 1 2.6360 -1.6005 -1.1314 6 6 1.7215 -0.2240 -2.4825 7 7 1.1428 0.9504 -2.6067 8 14 2.1220 -1.2334 -4.0024 9 1 0.9289 -2.0226 -4.4011 10 1 2.5081 -0.3251 -5.1121 11 1 3.2473 -2.1547 -3.7025 12 6 2.0324 -0.7103 1.2305 13 8 2.3611 -1.8763 1.1661 14 7 2.1164 -0.0502 2.4026 15 6 1.6109 1.3207 2.5091 16 6 2.6898 -0.6778 3.5240 17 6 2.6942 -0.0981 4.7852 18 6 3.2793 -0.8274 5.7361 19 16 3.8645 -2.3372 5.0500 20 6 3.2739 -1.8800 3.4579 21 1 -0.3633 0.6568 -0.7904 22 1 -0.3633 -1.0129 -0.1737 23 1 -0.3633 0.3560 0.9640 24 1 0.9244 1.2927 -3.4877 25 1 2.4319 2.0230 2.3653 26 1 0.8515 1.4882 1.7453 27 1 1.1729 1.4707 3.4959 28 1 2.2572 0.8699 4.9814 29 1 3.3750 -0.5369 6.7719 30 1 3.3645 -2.4797 2.5643 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892556929.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:05 Heat of formation + Delta-G solvation = 8.005968 kcal Electronic energy + Delta-G solvation = -14972.586759 eV Core-core repulsion = 12474.225258 eV Total energy + Delta-G solvation = -2498.361500 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.01101 -37.14243 -34.40817 -33.66117 -30.68925 -29.03183 -26.13633 -25.22692 -24.31492 -22.36984 -19.58254 -18.16897 -17.60312 -16.51383 -15.80355 -15.31483 -15.00588 -14.48384 -13.81251 -13.04065 -13.01958 -12.72969 -12.60916 -12.53841 -12.05745 -11.90522 -11.45266 -11.00519 -10.87937 -10.71017 -10.64567 -10.38626 -10.06426 -9.60681 -9.10994 -8.58429 -8.47165 -8.37477 -7.37058 -6.12970 -4.12298 1.28775 1.91606 2.23019 2.82540 3.30574 3.37105 3.42628 3.58749 3.71470 4.42459 5.04599 5.22703 5.32130 5.43847 5.60298 5.72497 5.95789 6.03579 6.10468 6.35900 6.46341 6.58264 6.71579 6.82024 7.22983 7.36349 7.58278 7.84805 7.91910 8.23746 8.92195 8.98852 9.51643 10.97389 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.042224 B = 0.006414 C = 0.005762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.967769 B = 4364.630176 C = 4857.942239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.035 3.965 3 H 0.055 0.945 4 C -0.506 4.506 5 H 0.072 0.928 6 C 0.063 3.937 7 N -0.893 5.893 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.272 1.272 12 C 0.521 3.479 13 O -0.521 6.521 14 N -0.557 5.557 15 C 0.073 3.927 16 C 0.129 3.871 17 C -0.148 4.148 18 C -0.207 4.207 19 S 0.073 5.927 20 C -0.244 4.244 21 H 0.081 0.919 22 H 0.041 0.959 23 H 0.017 0.983 24 H 0.262 0.738 25 H 0.059 0.941 26 H 0.094 0.906 27 H 0.065 0.935 28 H 0.141 0.859 29 H 0.163 0.837 30 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.290 1.073 13.636 13.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.014 3.986 3 H 0.073 0.927 4 C -0.545 4.545 5 H 0.090 0.910 6 C -0.138 4.138 7 N -0.531 5.531 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.213 1.213 11 H -0.197 1.197 12 C 0.314 3.686 13 O -0.397 6.397 14 N -0.283 5.283 15 C -0.070 4.070 16 C 0.025 3.975 17 C -0.181 4.181 18 C -0.342 4.342 19 S 0.333 5.667 20 C -0.382 4.382 21 H 0.099 0.901 22 H 0.060 0.940 23 H 0.036 0.964 24 H 0.072 0.928 25 H 0.078 0.922 26 H 0.113 0.887 27 H 0.084 0.916 28 H 0.159 0.841 29 H 0.180 0.820 30 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 2.106 -0.640 13.943 14.116 hybrid contribution -0.602 0.961 -1.278 1.708 sum 1.504 0.321 12.665 12.758 Atomic orbital electron populations 1.21734 0.96208 1.01628 0.99074 1.18906 0.94068 0.97089 0.88577 0.92694 1.21040 1.32968 1.11582 0.88889 0.91030 1.24916 0.95114 0.94740 0.99051 1.69936 1.42676 1.16679 1.23806 0.86463 0.78833 0.80091 0.82022 1.20563 1.21268 1.19676 1.22336 0.75620 0.86960 0.83691 1.90343 1.47926 1.17402 1.83996 1.45910 1.58478 1.15204 1.08695 1.22004 1.00288 0.81543 1.03149 1.17041 0.98980 0.93613 0.87908 1.19879 1.04739 1.02282 0.91223 1.25283 1.07166 0.98767 1.03015 1.84093 1.60203 1.19742 1.02677 1.26375 1.08726 1.02030 1.01071 0.90055 0.93988 0.96389 0.92831 0.92221 0.88750 0.91585 0.84105 0.81959 0.78435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.90 8.46 37.16 0.31 -2.58 16 2 C 0.03 0.85 1.70 -92.92 -0.16 0.70 16 3 H 0.06 1.36 7.21 -51.93 -0.37 0.99 16 4 C -0.51 -14.13 8.30 -34.44 -0.29 -14.41 16 5 H 0.07 2.10 6.99 -52.49 -0.37 1.74 16 6 C 0.06 1.74 5.21 -17.82 -0.09 1.64 16 7 N -0.89 -24.61 11.95 55.43 0.66 -23.94 16 8 Si 0.90 21.51 29.55 -169.99 -5.02 16.49 16 9 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 10 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 12 C 0.52 12.04 6.72 -10.98 -0.07 11.97 16 13 O -0.52 -13.30 12.60 5.53 0.07 -13.23 16 14 N -0.56 -10.60 3.12 -122.02 -0.38 -10.98 16 15 C 0.07 1.08 9.46 59.84 0.57 1.65 16 16 C 0.13 2.29 6.41 -85.11 -0.55 1.75 16 17 C -0.15 -2.07 9.34 -41.07 -0.38 -2.46 16 18 C -0.21 -2.58 11.22 29.03 0.33 -2.25 16 19 S 0.07 1.03 23.33 -107.50 -2.51 -1.48 16 20 C -0.24 -4.48 10.00 29.18 0.29 -4.19 16 21 H 0.08 1.95 6.82 -51.93 -0.35 1.59 16 22 H 0.04 0.98 8.11 -51.93 -0.42 0.56 16 23 H 0.02 0.33 6.53 -51.93 -0.34 0.00 16 24 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 25 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.09 1.45 4.78 -51.93 -0.25 1.20 16 27 H 0.07 0.77 6.59 -51.93 -0.34 0.43 16 28 H 0.14 1.60 6.69 -52.49 -0.35 1.25 16 29 H 0.16 1.48 8.06 -52.49 -0.42 1.06 16 30 H 0.20 4.17 5.39 -52.49 -0.28 3.89 16 LS Contribution 262.31 15.07 3.95 3.95 Total: -1.00 -30.16 262.31 -6.33 -36.48 By element: Atomic # 1 Polarization: 3.96 SS G_CDS: -3.06 Total: 0.90 kcal Atomic # 6 Polarization: -8.15 SS G_CDS: -0.04 Total: -8.19 kcal Atomic # 7 Polarization: -35.21 SS G_CDS: 0.28 Total: -34.92 kcal Atomic # 8 Polarization: -13.30 SS G_CDS: 0.07 Total: -13.23 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 16 Polarization: 1.03 SS G_CDS: -2.51 Total: -1.48 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -30.16 -6.33 -36.48 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892556929.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.489 kcal (2) G-P(sol) polarization free energy of solvation -30.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.483 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds