Wall clock time and date at job start Sun Mar 29 2020 22:17:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46788 * 2 1 4 4 C 1.50694 * 109.47471 * 240.00083 * 2 1 3 5 5 H 1.08002 * 119.99889 * 241.29147 * 4 2 1 6 6 C 1.37874 * 120.00079 * 61.28711 * 4 2 1 7 7 N 1.31513 * 120.00268 * 9.10778 * 6 4 2 8 8 Si 1.86801 * 119.99774 * 189.10768 * 6 4 2 9 9 H 1.48504 * 109.47102 * 94.98269 * 8 6 4 10 10 H 1.48506 * 109.46960 * 214.97697 * 8 6 4 11 11 H 1.48494 * 109.47641 * 334.97916 * 8 6 4 12 12 C 1.50702 * 109.47171 * 119.99667 * 2 1 3 13 13 O 1.21309 * 119.99928 * 97.33919 * 12 2 1 14 14 N 1.34784 * 119.99715 * 277.34109 * 12 2 1 15 15 C 1.46496 * 120.00211 * 5.34199 * 14 12 2 16 16 C 1.40720 * 119.99418 * 185.34415 * 14 12 2 17 17 C 1.38807 * 122.61998 * 186.04593 * 16 14 12 18 18 C 1.33361 * 114.88848 * 180.02562 * 17 16 14 19 19 S 1.75859 * 109.71513 * 359.76108 * 18 17 16 20 20 C 1.33817 * 122.62663 * 6.07650 * 16 14 12 21 21 H 1.09000 * 109.46674 * 50.27345 * 1 2 3 22 22 H 1.09001 * 109.46659 * 170.27109 * 1 2 3 23 23 H 1.08999 * 109.47183 * 290.26688 * 1 2 3 24 24 H 0.97003 * 120.00231 * 179.97438 * 7 6 4 25 25 H 1.08998 * 109.47598 * 264.29584 * 15 14 12 26 26 H 1.08997 * 109.46808 * 24.29968 * 15 14 12 27 27 H 1.09003 * 109.46555 * 144.29521 * 15 14 12 28 28 H 1.07997 * 122.55405 * 0.02562 * 17 16 14 29 29 H 1.07999 * 125.14510 * 180.02562 * 18 17 16 30 30 H 1.07998 * 125.19663 * 359.95022 * 20 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2304 5 1 2.6360 -1.6005 -1.1314 6 6 1.7215 -0.2240 -2.4825 7 7 1.1428 0.9504 -2.6067 8 14 2.1220 -1.2334 -4.0024 9 1 0.9289 -2.0226 -4.4011 10 1 2.5081 -0.3251 -5.1121 11 1 3.2473 -2.1547 -3.7025 12 6 2.0324 -0.7103 1.2305 13 8 2.3611 -1.8763 1.1661 14 7 2.1164 -0.0502 2.4026 15 6 1.6109 1.3207 2.5091 16 6 2.6898 -0.6778 3.5240 17 6 2.6942 -0.0981 4.7852 18 6 3.2793 -0.8274 5.7361 19 16 3.8645 -2.3372 5.0500 20 6 3.2739 -1.8800 3.4579 21 1 -0.3633 0.6568 -0.7904 22 1 -0.3633 -1.0129 -0.1737 23 1 -0.3633 0.3560 0.9640 24 1 0.9244 1.2927 -3.4877 25 1 2.4319 2.0230 2.3653 26 1 0.8515 1.4882 1.7453 27 1 1.1729 1.4707 3.4959 28 1 2.2572 0.8699 4.9814 29 1 3.3750 -0.5369 6.7719 30 1 3.3645 -2.4797 2.5643 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892556929.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:04 Heat of formation + Delta-G solvation = -10.595101 kcal Electronic energy + Delta-G solvation = -14973.393362 eV Core-core repulsion = 12474.225258 eV Total energy + Delta-G solvation = -2499.168103 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.56008 -38.58783 -36.10450 -35.41417 -32.59167 -30.30805 -27.53168 -27.23704 -25.71601 -23.98486 -21.07978 -19.62994 -18.86136 -18.40005 -17.46713 -16.96695 -16.52025 -16.20344 -15.26560 -14.69641 -14.52858 -14.29746 -14.04866 -13.77652 -13.58023 -13.14845 -13.05078 -12.90446 -12.76598 -12.49650 -12.32783 -12.07279 -11.80423 -11.16170 -10.93180 -10.56311 -10.22963 -9.62965 -8.68342 -8.23278 -6.28928 0.11757 0.75720 1.07639 1.37921 1.39194 1.41638 1.51442 2.12949 2.17328 2.43596 3.09319 3.86402 4.10855 4.29439 4.37326 4.58122 4.65855 4.73702 4.84318 4.88464 4.90747 4.99014 5.10228 5.26337 5.43826 5.65841 5.77425 5.88512 6.09091 6.45828 6.75678 7.25611 7.38808 8.86032 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.042224 B = 0.006414 C = 0.005762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.967769 B = 4364.630176 C = 4857.942239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.035 3.965 3 H 0.050 0.950 4 C -0.535 4.535 5 H 0.044 0.956 6 C 0.028 3.972 7 N -0.906 5.906 8 Si 0.952 3.048 9 H -0.273 1.273 10 H -0.273 1.273 11 H -0.280 1.280 12 C 0.515 3.485 13 O -0.560 6.560 14 N -0.554 5.554 15 C 0.065 3.935 16 C 0.116 3.884 17 C -0.160 4.160 18 C -0.179 4.179 19 S 0.107 5.893 20 C -0.293 4.293 21 H 0.066 0.934 22 H 0.024 0.976 23 H 0.054 0.946 24 H 0.267 0.733 25 H 0.072 0.928 26 H 0.085 0.915 27 H 0.106 0.894 28 H 0.175 0.825 29 H 0.208 0.792 30 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.121 2.300 15.871 16.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.013 3.987 3 H 0.068 0.932 4 C -0.573 4.573 5 H 0.062 0.938 6 C -0.173 4.173 7 N -0.545 5.545 8 Si 0.777 3.223 9 H -0.198 1.198 10 H -0.198 1.198 11 H -0.206 1.206 12 C 0.307 3.693 13 O -0.438 6.438 14 N -0.279 5.279 15 C -0.076 4.076 16 C 0.012 3.988 17 C -0.191 4.191 18 C -0.315 4.315 19 S 0.367 5.633 20 C -0.431 4.431 21 H 0.085 0.915 22 H 0.043 0.957 23 H 0.072 0.928 24 H 0.076 0.924 25 H 0.091 0.909 26 H 0.104 0.896 27 H 0.125 0.875 28 H 0.192 0.808 29 H 0.225 0.775 30 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 1.934 0.621 16.210 16.337 hybrid contribution -0.495 0.579 -1.859 2.009 sum 1.438 1.200 14.352 14.474 Atomic orbital electron populations 1.21553 0.94913 1.00290 1.00528 1.18792 0.95094 0.96302 0.88493 0.93238 1.21175 1.33685 1.11353 0.91093 0.93813 1.25518 0.94958 0.95633 1.01167 1.69985 1.42671 1.17173 1.24631 0.85641 0.78461 0.78881 0.79274 1.19844 1.19820 1.20553 1.22020 0.75848 0.86600 0.84827 1.90354 1.49591 1.18875 1.85027 1.45801 1.57704 1.16395 1.07981 1.22298 1.00704 0.79392 1.05249 1.17507 0.98821 0.93671 0.88847 1.20055 1.05864 1.03862 0.89357 1.25867 1.04155 0.96806 1.04622 1.83911 1.59372 1.20651 0.99374 1.26181 1.11318 1.02886 1.02760 0.91518 0.95702 0.92770 0.92359 0.90925 0.89625 0.87519 0.80804 0.77470 0.82222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.24 8.46 71.98 0.61 -4.63 16 2 C 0.03 1.74 1.70 -12.29 -0.02 1.72 16 3 H 0.05 2.51 7.21 -2.39 -0.02 2.49 16 4 C -0.53 -30.99 8.30 25.60 0.21 -30.78 16 5 H 0.04 2.72 6.99 -2.91 -0.02 2.70 16 6 C 0.03 1.53 5.21 84.65 0.44 1.97 16 7 N -0.91 -50.22 11.95 21.45 0.26 -49.96 16 8 Si 0.95 44.75 29.55 68.60 2.03 46.78 16 9 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 10 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 11 H -0.28 -13.45 7.11 99.48 0.71 -12.75 16 12 C 0.51 24.58 6.72 87.66 0.59 25.17 16 13 O -0.56 -30.34 12.60 -3.12 -0.04 -30.38 16 14 N -0.55 -20.84 3.12 -658.34 -2.05 -22.89 16 15 C 0.06 1.76 9.46 127.77 1.21 2.97 16 16 C 0.12 4.03 6.41 36.84 0.24 4.26 16 17 C -0.16 -3.87 9.34 21.30 0.20 -3.67 16 18 C -0.18 -3.65 11.22 66.72 0.75 -2.90 16 19 S 0.11 2.80 23.33 -56.49 -1.32 1.48 16 20 C -0.29 -10.98 10.00 66.81 0.67 -10.31 16 21 H 0.07 3.21 6.82 -2.39 -0.02 3.20 16 22 H 0.02 1.17 8.11 -2.39 -0.02 1.15 16 23 H 0.05 2.02 6.53 -2.39 -0.02 2.01 16 24 H 0.27 13.96 8.31 -92.71 -0.77 13.19 16 25 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 26 H 0.09 2.48 4.78 -2.39 -0.01 2.47 16 27 H 0.11 2.03 6.59 -2.39 -0.02 2.01 16 28 H 0.17 2.99 6.69 -2.91 -0.02 2.98 16 29 H 0.21 2.38 8.06 -2.91 -0.02 2.36 16 30 H 0.16 7.28 5.39 -2.91 -0.02 7.26 16 Total: -1.00 -68.47 262.31 4.92 -63.55 By element: Atomic # 1 Polarization: 6.46 SS G_CDS: 1.16 Total: 7.62 kcal Atomic # 6 Polarization: -21.09 SS G_CDS: 4.89 Total: -16.19 kcal Atomic # 7 Polarization: -71.06 SS G_CDS: -1.80 Total: -72.85 kcal Atomic # 8 Polarization: -30.34 SS G_CDS: -0.04 Total: -30.38 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Atomic # 16 Polarization: 2.80 SS G_CDS: -1.32 Total: 1.48 kcal Total: -68.47 4.92 -63.55 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892556929.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.958 kcal (2) G-P(sol) polarization free energy of solvation -68.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds