Wall clock time and date at job start Sun Mar 29 2020 22:01:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48503 * 109.46845 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.47399 * 119.99834 * 3 2 1 6 6 H 1.48498 * 109.47295 * 240.00440 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00409 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99398 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.46830 * 299.99601 * 9 7 2 11 11 O 1.42898 * 109.47644 * 59.99870 * 9 7 2 12 12 C 1.53002 * 109.46931 * 180.02562 * 9 7 2 13 13 S 1.81399 * 109.47165 * 179.97438 * 12 9 7 14 14 C 1.81405 * 102.99706 * 179.97438 * 13 12 9 15 15 C 1.50705 * 109.46754 * 180.02562 * 14 13 12 16 16 C 1.38643 * 120.78804 * 269.71784 * 15 14 13 17 17 C 1.38204 * 119.16173 * 179.79595 * 16 15 14 18 18 N 1.31868 * 120.76437 * 0.49195 * 17 16 15 19 19 C 1.31871 * 121.72619 * 359.73651 * 18 17 16 20 20 C 1.38204 * 120.76222 * 0.02562 * 19 18 17 21 21 H 0.97000 * 119.99706 * 179.97438 * 1 2 3 22 22 H 0.96701 * 113.99881 * 59.99544 * 11 9 7 23 23 H 1.09004 * 109.46733 * 299.99896 * 12 9 7 24 24 H 1.08996 * 109.47407 * 59.99213 * 12 9 7 25 25 H 1.09000 * 109.47133 * 299.99843 * 14 13 12 26 26 H 1.08990 * 109.47435 * 60.00310 * 14 13 12 27 27 H 1.08000 * 120.42072 * 0.02562 * 16 15 14 28 28 H 1.08007 * 119.62067 * 180.25038 * 17 16 15 29 29 H 1.07998 * 119.61760 * 179.97438 * 19 18 17 30 30 H 1.07998 * 120.41853 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7464 0.0006 5 1 3.1030 1.6964 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 1 0.6241 -2.5574 0.8881 11 8 0.4299 -2.5741 -1.1688 12 6 2.2453 -3.6621 -0.0015 13 16 1.3382 -5.2331 -0.0021 14 6 2.6650 -6.4702 -0.0025 15 6 2.0634 -7.8519 -0.0037 16 6 1.7850 -8.5058 1.1868 17 6 1.2294 -9.7705 1.1465 18 7 0.9734 -10.3584 -0.0058 19 6 1.2293 -9.7686 -1.1572 20 6 1.7804 -8.5018 -1.1953 21 1 -0.4850 -0.8401 -0.0004 22 1 0.9223 -2.5282 -1.9998 23 1 2.8726 -3.6039 -0.8910 24 1 2.8713 -3.6047 0.8889 25 1 3.2812 -6.3418 -0.8924 26 1 3.2811 -6.3426 0.8875 27 1 1.9962 -8.0312 2.1337 28 1 1.0058 -10.2850 2.0694 29 1 1.0064 -10.2818 -2.0809 30 1 1.9881 -8.0241 -2.1414 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000901631876.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:24 Heat of formation + Delta-G solvation = -32.535187 kcal Electronic energy + Delta-G solvation = -13931.757474 eV Core-core repulsion = 11431.637977 eV Total energy + Delta-G solvation = -2500.119497 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.20092 -36.27803 -34.06613 -32.20950 -31.32083 -29.86392 -28.03413 -24.80863 -23.57693 -22.38602 -21.28320 -17.48496 -16.93313 -16.49857 -15.83239 -15.68295 -14.89235 -14.55388 -14.11555 -13.87625 -13.81285 -13.42948 -13.14037 -13.08894 -12.40219 -11.78111 -11.60763 -11.46535 -10.83648 -10.26451 -10.17650 -9.95479 -9.62824 -9.57902 -9.27171 -9.23451 -8.56622 -8.18946 -7.28512 -6.45366 -4.31425 0.89996 1.02465 2.19279 3.01233 3.36982 3.37649 3.57357 3.76129 4.33241 4.42104 4.44446 4.55553 4.97051 5.00916 5.16312 5.24357 5.37444 5.54317 5.65818 5.66643 5.76561 5.84360 6.02423 6.18950 6.42298 6.56499 7.28549 7.81176 7.83822 8.21372 8.74073 9.00097 9.54966 10.94463 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.069393 B = 0.004308 C = 0.004259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 403.404251 B = 6498.381120 C = 6573.225534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.037 3.963 3 Si 1.069 2.931 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.287 1.287 7 C -0.650 4.650 8 H 0.051 0.949 9 C 0.230 3.770 10 H 0.058 0.942 11 O -0.572 6.572 12 C -0.094 4.094 13 S -0.242 6.242 14 C -0.066 4.066 15 C -0.017 4.017 16 C -0.159 4.159 17 C 0.097 3.903 18 N -0.489 5.489 19 C 0.097 3.903 20 C -0.158 4.158 21 H 0.285 0.715 22 H 0.354 0.646 23 H 0.071 0.929 24 H 0.076 0.924 25 H 0.089 0.911 26 H 0.089 0.911 27 H 0.136 0.864 28 H 0.156 0.844 29 H 0.156 0.844 30 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.163 -15.177 -0.344 16.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.173 4.173 3 Si 0.897 3.103 4 H -0.206 1.206 5 H -0.214 1.214 6 H -0.213 1.213 7 C -0.690 4.690 8 H 0.069 0.931 9 C 0.171 3.829 10 H 0.076 0.924 11 O -0.377 6.377 12 C -0.242 4.242 13 S -0.013 6.013 14 C -0.214 4.214 15 C -0.026 4.026 16 C -0.180 4.180 17 C -0.059 4.059 18 N -0.199 5.199 19 C -0.059 4.059 20 C -0.179 4.179 21 H 0.097 0.903 22 H 0.200 0.800 23 H 0.090 0.910 24 H 0.095 0.905 25 H 0.108 0.892 26 H 0.107 0.893 27 H 0.154 0.846 28 H 0.173 0.827 29 H 0.173 0.827 30 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 4.022 -14.586 0.119 15.130 hybrid contribution 2.546 -0.511 -0.325 2.617 sum 6.568 -15.096 -0.206 16.465 Atomic orbital electron populations 1.70632 1.06924 1.32445 1.42032 1.25840 0.96464 1.02450 0.92524 0.83565 0.74942 0.75262 0.76572 1.20575 1.21358 1.21332 1.22341 0.94368 0.91804 1.60459 0.93060 1.19314 0.87991 0.89329 0.86250 0.92439 1.86524 1.38924 1.96289 1.15918 1.24486 1.02322 0.93495 1.03921 1.87395 1.14545 1.01349 1.97967 1.22328 0.99969 0.93458 1.05631 1.19703 0.95497 0.93750 0.93632 1.22071 1.00693 0.96488 0.98797 1.22728 0.94667 0.92265 0.96286 1.67654 1.16693 1.36944 0.98606 1.22732 0.94668 0.92239 0.96301 1.22072 1.00603 0.96464 0.98798 0.90260 0.80043 0.91016 0.90522 0.89226 0.89283 0.84593 0.82680 0.82669 0.84565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.73 13.53 55.43 0.75 -25.98 16 2 C 0.04 1.04 5.40 -17.82 -0.10 0.94 16 3 Si 1.07 24.31 29.90 -169.99 -5.08 19.23 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.23 7.11 56.52 0.40 -5.82 16 6 H -0.29 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.65 -17.60 8.76 -34.44 -0.30 -17.90 16 8 H 0.05 1.35 7.74 -52.49 -0.41 0.94 16 9 C 0.23 5.70 2.48 -27.88 -0.07 5.63 16 10 H 0.06 1.57 8.01 -51.93 -0.42 1.16 16 11 O -0.57 -14.33 11.61 -35.23 -0.41 -14.74 16 12 C -0.09 -1.87 5.58 37.16 0.21 -1.66 16 13 S -0.24 -4.33 21.36 -107.50 -2.30 -6.63 16 14 C -0.07 -0.88 6.12 36.01 0.22 -0.66 16 15 C -0.02 -0.21 5.18 -104.32 -0.54 -0.75 16 16 C -0.16 -1.84 9.82 -39.44 -0.39 -2.23 16 17 C 0.10 1.09 11.18 -17.55 -0.20 0.90 16 18 N -0.49 -6.16 10.36 -13.25 -0.14 -6.29 16 19 C 0.10 1.10 11.18 -17.55 -0.20 0.90 16 20 C -0.16 -1.83 9.82 -39.44 -0.39 -2.22 16 21 H 0.29 8.81 6.47 -40.82 -0.26 8.54 16 22 H 0.35 7.93 9.04 45.56 0.41 8.34 16 23 H 0.07 1.36 8.14 -51.92 -0.42 0.94 16 24 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 25 H 0.09 1.08 8.10 -51.92 -0.42 0.66 16 26 H 0.09 1.08 8.10 -51.93 -0.42 0.65 16 27 H 0.14 1.36 8.06 -52.49 -0.42 0.94 16 28 H 0.16 1.30 8.06 -52.48 -0.42 0.87 16 29 H 0.16 1.30 8.06 -52.49 -0.42 0.88 16 30 H 0.14 1.37 8.06 -52.49 -0.42 0.95 16 LS Contribution 279.58 15.07 4.21 4.21 Total: -1.00 -31.44 279.58 -7.56 -39.00 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: -2.85 Total: 8.25 kcal Atomic # 6 Polarization: -15.30 SS G_CDS: -1.75 Total: -17.05 kcal Atomic # 7 Polarization: -32.89 SS G_CDS: 0.61 Total: -32.27 kcal Atomic # 8 Polarization: -14.33 SS G_CDS: -0.41 Total: -14.74 kcal Atomic # 14 Polarization: 24.31 SS G_CDS: -5.08 Total: 19.23 kcal Atomic # 16 Polarization: -4.33 SS G_CDS: -2.30 Total: -6.63 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -31.44 -7.56 -39.00 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000901631876.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.462 kcal (2) G-P(sol) polarization free energy of solvation -31.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds