Wall clock time and date at job start Sun Mar 29 2020 22:01:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48503 * 109.46845 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.47399 * 119.99834 * 3 2 1 6 6 H 1.48498 * 109.47295 * 240.00440 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00409 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99398 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.46830 * 299.99601 * 9 7 2 11 11 O 1.42898 * 109.47644 * 59.99870 * 9 7 2 12 12 C 1.53002 * 109.46931 * 180.02562 * 9 7 2 13 13 S 1.81399 * 109.47165 * 179.97438 * 12 9 7 14 14 C 1.81405 * 102.99706 * 179.97438 * 13 12 9 15 15 C 1.50705 * 109.46754 * 180.02562 * 14 13 12 16 16 C 1.38643 * 120.78804 * 269.71784 * 15 14 13 17 17 C 1.38204 * 119.16173 * 179.79595 * 16 15 14 18 18 N 1.31868 * 120.76437 * 0.49195 * 17 16 15 19 19 C 1.31871 * 121.72619 * 359.73651 * 18 17 16 20 20 C 1.38204 * 120.76222 * 0.02562 * 19 18 17 21 21 H 0.97000 * 119.99706 * 179.97438 * 1 2 3 22 22 H 0.96701 * 113.99881 * 59.99544 * 11 9 7 23 23 H 1.09004 * 109.46733 * 299.99896 * 12 9 7 24 24 H 1.08996 * 109.47407 * 59.99213 * 12 9 7 25 25 H 1.09000 * 109.47133 * 299.99843 * 14 13 12 26 26 H 1.08990 * 109.47435 * 60.00310 * 14 13 12 27 27 H 1.08000 * 120.42072 * 0.02562 * 16 15 14 28 28 H 1.08007 * 119.62067 * 180.25038 * 17 16 15 29 29 H 1.07998 * 119.61760 * 179.97438 * 19 18 17 30 30 H 1.07998 * 120.41853 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7464 0.0006 5 1 3.1030 1.6964 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 1 0.6241 -2.5574 0.8881 11 8 0.4299 -2.5741 -1.1688 12 6 2.2453 -3.6621 -0.0015 13 16 1.3382 -5.2331 -0.0021 14 6 2.6650 -6.4702 -0.0025 15 6 2.0634 -7.8519 -0.0037 16 6 1.7850 -8.5058 1.1868 17 6 1.2294 -9.7705 1.1465 18 7 0.9734 -10.3584 -0.0058 19 6 1.2293 -9.7686 -1.1572 20 6 1.7804 -8.5018 -1.1953 21 1 -0.4850 -0.8401 -0.0004 22 1 0.9223 -2.5282 -1.9998 23 1 2.8726 -3.6039 -0.8910 24 1 2.8713 -3.6047 0.8889 25 1 3.2812 -6.3418 -0.8924 26 1 3.2811 -6.3426 0.8875 27 1 1.9962 -8.0312 2.1337 28 1 1.0058 -10.2850 2.0694 29 1 1.0064 -10.2818 -2.0809 30 1 1.9881 -8.0241 -2.1414 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000901631876.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:23 Heat of formation + Delta-G solvation = -53.644722 kcal Electronic energy + Delta-G solvation = -13932.672852 eV Core-core repulsion = 11431.637977 eV Total energy + Delta-G solvation = -2501.034875 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.07375 -38.25577 -35.00723 -34.32632 -32.16925 -31.67714 -29.05488 -26.82466 -24.43735 -23.68194 -22.86078 -19.53323 -18.04596 -17.41067 -17.17185 -16.60232 -16.52967 -16.32185 -15.66906 -15.43310 -14.80402 -14.74267 -14.48913 -14.17406 -14.06311 -13.28232 -13.17876 -12.60017 -12.49038 -12.24789 -11.93651 -11.58318 -11.12551 -10.66331 -10.53110 -10.43812 -10.16108 -10.12028 -8.70736 -8.65509 -6.53102 -0.12917 0.17451 0.96445 1.54374 1.61577 1.65567 1.81090 2.56099 2.88160 3.13232 3.42792 3.58823 3.67287 3.89433 4.06213 4.10056 4.16721 4.18739 4.28101 4.43949 4.67481 4.75172 4.86613 4.95859 5.28755 5.29969 5.72377 5.73401 6.06313 6.48843 6.97746 7.10201 7.44312 8.71467 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.069393 B = 0.004308 C = 0.004259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 403.404251 B = 6498.381120 C = 6573.225534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.016 4.016 3 Si 1.119 2.881 4 H -0.287 1.287 5 H -0.269 1.269 6 H -0.266 1.266 7 C -0.658 4.658 8 H 0.059 0.941 9 C 0.228 3.772 10 H 0.021 0.979 11 O -0.584 6.584 12 C -0.080 4.080 13 S -0.279 6.279 14 C -0.046 4.046 15 C -0.036 4.036 16 C -0.163 4.163 17 C 0.091 3.909 18 N -0.509 5.509 19 C 0.091 3.909 20 C -0.162 4.162 21 H 0.267 0.733 22 H 0.365 0.635 23 H 0.083 0.917 24 H 0.082 0.918 25 H 0.105 0.895 26 H 0.103 0.897 27 H 0.150 0.850 28 H 0.181 0.819 29 H 0.181 0.819 30 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.850 -15.979 -0.581 17.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.218 4.218 3 Si 0.939 3.061 4 H -0.213 1.213 5 H -0.194 1.194 6 H -0.191 1.191 7 C -0.696 4.696 8 H 0.077 0.923 9 C 0.170 3.830 10 H 0.039 0.961 11 O -0.390 6.390 12 C -0.229 4.229 13 S -0.050 6.050 14 C -0.193 4.193 15 C -0.045 4.045 16 C -0.185 4.185 17 C -0.065 4.065 18 N -0.219 5.219 19 C -0.065 4.065 20 C -0.183 4.183 21 H 0.077 0.923 22 H 0.211 0.789 23 H 0.102 0.898 24 H 0.101 0.899 25 H 0.123 0.877 26 H 0.122 0.878 27 H 0.167 0.833 28 H 0.198 0.802 29 H 0.198 0.802 30 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 5.728 -15.402 -0.122 16.433 hybrid contribution 2.017 -0.436 -0.253 2.079 sum 7.745 -15.838 -0.375 17.634 Atomic orbital electron populations 1.70781 1.08196 1.31263 1.45167 1.27385 0.96396 1.06584 0.91435 0.82937 0.74077 0.70944 0.78108 1.21282 1.19366 1.19130 1.22755 0.94918 0.92964 1.59011 0.92292 1.19101 0.87988 0.90988 0.84955 0.96101 1.86473 1.39555 1.96443 1.16498 1.24048 1.00894 0.93192 1.04725 1.87469 1.17462 1.01917 1.98118 1.22326 0.98066 0.91772 1.07148 1.19791 0.96670 0.93546 0.94504 1.22298 1.00306 0.96710 0.99168 1.23168 0.94088 0.92322 0.96965 1.67708 1.17232 1.37639 0.99351 1.23173 0.94085 0.92298 0.96978 1.22298 1.00200 0.96681 0.99158 0.92262 0.78892 0.89848 0.89935 0.87695 0.87843 0.83271 0.80245 0.80225 0.83215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.56 13.53 21.45 0.29 -56.27 16 2 C -0.02 -0.87 5.40 84.66 0.46 -0.41 16 3 Si 1.12 48.22 29.90 68.60 2.05 50.27 16 4 H -0.29 -12.61 7.11 99.48 0.71 -11.91 16 5 H -0.27 -10.69 7.11 99.48 0.71 -9.98 16 6 H -0.27 -10.52 7.11 99.48 0.71 -9.82 16 7 C -0.66 -35.47 8.76 25.60 0.22 -35.25 16 8 H 0.06 3.03 7.74 -2.91 -0.02 3.01 16 9 C 0.23 11.47 2.48 29.85 0.07 11.54 16 10 H 0.02 1.20 8.01 -2.39 -0.02 1.18 16 11 O -0.58 -29.73 11.61 -148.98 -1.73 -31.46 16 12 C -0.08 -3.13 5.58 71.98 0.40 -2.73 16 13 S -0.28 -9.74 21.36 -56.49 -1.21 -10.95 16 14 C -0.05 -1.11 6.12 71.24 0.44 -0.67 16 15 C -0.04 -0.83 5.18 -19.67 -0.10 -0.93 16 16 C -0.16 -3.47 9.82 22.36 0.22 -3.25 16 17 C 0.09 1.87 11.18 84.68 0.95 2.82 16 18 N -0.51 -11.89 10.36 -195.84 -2.03 -13.92 16 19 C 0.09 1.87 11.18 84.68 0.95 2.81 16 20 C -0.16 -3.43 9.82 22.36 0.22 -3.21 16 21 H 0.27 17.09 6.47 -92.71 -0.60 16.49 16 22 H 0.36 16.40 9.04 -74.06 -0.67 15.73 16 23 H 0.08 3.02 8.14 -2.39 -0.02 3.00 16 24 H 0.08 3.07 8.14 -2.39 -0.02 3.05 16 25 H 0.10 2.23 8.10 -2.39 -0.02 2.21 16 26 H 0.10 2.22 8.10 -2.40 -0.02 2.20 16 27 H 0.15 2.67 8.06 -2.91 -0.02 2.64 16 28 H 0.18 2.60 8.06 -2.91 -0.02 2.58 16 29 H 0.18 2.60 8.06 -2.91 -0.02 2.57 16 30 H 0.15 2.66 8.06 -2.91 -0.02 2.64 16 Total: -1.00 -67.85 279.58 1.84 -66.01 By element: Atomic # 1 Polarization: 24.96 SS G_CDS: 0.64 Total: 25.60 kcal Atomic # 6 Polarization: -33.10 SS G_CDS: 3.82 Total: -29.27 kcal Atomic # 7 Polarization: -68.45 SS G_CDS: -1.74 Total: -70.19 kcal Atomic # 8 Polarization: -29.73 SS G_CDS: -1.73 Total: -31.46 kcal Atomic # 14 Polarization: 48.22 SS G_CDS: 2.05 Total: 50.27 kcal Atomic # 16 Polarization: -9.74 SS G_CDS: -1.21 Total: -10.95 kcal Total: -67.85 1.84 -66.01 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000901631876.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.364 kcal (2) G-P(sol) polarization free energy of solvation -67.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds