Wall clock time and date at job start Sun Mar 29 2020 21:54:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30674 * 1 3 3 Si 1.86794 * 120.00315 * 2 1 4 4 H 1.48508 * 109.46687 * 269.99904 * 3 2 1 5 5 H 1.48503 * 109.47169 * 29.99616 * 3 2 1 6 6 H 1.48495 * 109.47370 * 150.00179 * 3 2 1 7 7 C 1.40051 * 119.99566 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99641 * 180.02562 * 7 2 1 9 9 C 1.46372 * 120.00240 * 359.97438 * 7 2 1 10 10 O 1.21693 * 119.99974 * 0.02562 * 9 7 2 11 11 N 1.34779 * 119.99948 * 179.97438 * 9 7 2 12 12 C 1.47969 * 126.93987 * 0.04795 * 11 9 7 13 13 C 1.54922 * 102.75425 * 201.19476 * 12 11 9 14 14 O 1.44646 * 102.34611 * 323.87879 * 13 12 11 15 15 C 1.43732 * 105.57496 * 37.53798 * 14 13 12 16 16 H 1.09001 * 109.71327 * 94.58588 * 15 14 13 17 17 C 1.53002 * 109.71135 * 215.12929 * 15 14 13 18 18 F 1.39897 * 109.47242 * 58.54688 * 17 15 14 19 19 F 1.39897 * 109.47075 * 178.54918 * 17 15 14 20 20 F 1.39905 * 109.47320 * 298.54672 * 17 15 14 21 21 H 0.96994 * 119.99745 * 0.02562 * 1 2 3 22 22 H 1.09007 * 110.75919 * 82.88103 * 12 11 9 23 23 H 1.09000 * 110.75544 * 319.51010 * 12 11 9 24 24 H 1.09002 * 110.83209 * 205.66932 * 13 12 11 25 25 H 1.08998 * 110.83362 * 82.09635 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6176 0.0000 4 1 2.4883 2.0462 -1.4002 5 1 1.4383 2.6527 0.7000 6 1 3.5383 1.4401 0.7000 7 6 2.0069 -1.2129 0.0005 8 1 3.0870 -1.2129 0.0010 9 6 1.2750 -2.4805 0.0017 10 8 0.0581 -2.4805 0.0017 11 7 1.9489 -3.6478 0.0017 12 6 3.4177 -3.8266 0.0016 13 6 3.5869 -5.2664 -0.5446 14 8 2.4509 -5.9514 0.0319 15 6 1.3722 -5.0020 0.0028 16 1 0.7772 -5.1491 -0.8986 17 6 0.4892 -5.1861 1.2386 18 9 1.2612 -5.0163 2.3929 19 9 -0.5396 -4.2382 1.2220 20 9 -0.0615 -6.4722 1.2309 21 1 -0.4849 0.8400 -0.0004 22 1 3.8166 -3.7479 1.0130 23 1 3.8948 -3.1038 -0.6603 24 1 4.5219 -5.7056 -0.1966 25 1 3.5342 -5.2767 -1.6333 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000912088727.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:41 Heat of formation + Delta-G solvation = -216.945352 kcal Electronic energy + Delta-G solvation = -18240.759562 eV Core-core repulsion = 14612.200734 eV Total energy + Delta-G solvation = -3628.558827 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.056 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -49.31134 -46.93618 -46.67895 -39.57337 -36.64328 -33.05820 -32.56667 -30.29776 -27.28399 -25.75987 -22.92540 -22.40608 -19.90427 -17.99418 -17.81229 -17.49818 -16.73182 -15.98698 -15.26147 -14.96248 -14.53003 -13.79776 -13.65469 -13.59647 -13.56909 -13.27434 -13.16666 -12.89028 -12.83556 -12.29488 -11.81193 -11.57076 -11.26341 -11.13924 -11.01331 -10.55890 -10.33018 -9.89450 -9.00864 -7.89266 -7.76718 -6.37903 -4.84992 3.04922 3.11200 3.14861 3.17560 3.65966 3.85695 4.12684 4.28957 4.53234 4.80510 5.00159 5.16092 5.27573 5.43257 5.47381 5.75395 5.80215 6.15369 6.30197 6.95596 7.26929 7.75729 8.10256 8.82581 9.08445 10.30627 10.53386 Molecular weight = 239.06amu Principal moments of inertia in cm(-1) A = 0.034426 B = 0.009525 C = 0.008098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.134978 B = 2938.898053 C = 3456.876031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.760 5.760 2 C 0.085 3.915 3 Si 0.915 3.085 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.264 1.264 7 C -0.530 4.530 8 H 0.073 0.927 9 C 0.566 3.434 10 O -0.546 6.546 11 N -0.652 5.652 12 C 0.083 3.917 13 C 0.038 3.962 14 O -0.362 6.362 15 C 0.267 3.733 16 H 0.104 0.896 17 C 0.436 3.564 18 F -0.184 7.184 19 F -0.142 7.142 20 F -0.193 7.193 21 H 0.272 0.728 22 H 0.068 0.932 23 H 0.092 0.908 24 H 0.106 0.894 25 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.728 -6.746 -0.761 9.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.388 5.388 2 C -0.136 4.136 3 Si 0.739 3.261 4 H -0.196 1.196 5 H -0.203 1.203 6 H -0.188 1.188 7 C -0.566 4.566 8 H 0.091 0.909 9 C 0.374 3.626 10 O -0.425 6.425 11 N -0.399 5.399 12 C -0.040 4.040 13 C -0.039 4.039 14 O -0.279 6.279 15 C 0.121 3.879 16 H 0.121 0.879 17 C 0.380 3.620 18 F -0.166 7.166 19 F -0.124 7.124 20 F -0.174 7.174 21 H 0.083 0.917 22 H 0.086 0.914 23 H 0.111 0.889 24 H 0.124 0.876 25 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 5.759 -6.748 -0.653 8.896 hybrid contribution 0.402 0.798 0.186 0.913 sum 6.161 -5.950 -0.467 8.578 Atomic orbital electron populations 1.70001 1.07103 1.27870 1.33838 1.25752 0.94755 1.00487 0.92570 0.86251 0.80095 0.80836 0.78949 1.19573 1.20264 1.18761 1.20783 0.93633 0.88118 1.54113 0.90904 1.18288 0.87035 0.80282 0.76961 1.90724 1.13114 1.84542 1.54136 1.49995 1.05491 1.03029 1.81376 1.22806 0.83881 0.95773 1.01578 1.24061 0.89367 0.91865 0.98573 1.89093 1.20840 1.34459 1.83481 1.23184 0.88839 0.82140 0.93775 0.87882 1.21219 0.81048 0.73755 0.86016 1.93125 1.75300 1.95136 1.53011 1.93415 1.59429 1.63143 1.96365 1.93124 1.86961 1.40536 1.96822 0.91665 0.91366 0.88933 0.87585 0.90820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -21.91 11.83 55.55 0.66 -21.25 15 2 C 0.09 2.27 5.50 -17.36 -0.10 2.18 15 3 Si 0.91 19.23 29.56 -169.99 -5.02 14.20 15 4 H -0.27 -5.53 7.11 56.52 0.40 -5.13 15 5 H -0.28 -5.76 7.11 56.52 0.40 -5.36 15 6 H -0.26 -5.35 7.11 56.52 0.40 -4.95 15 7 C -0.53 -14.23 9.06 -35.63 -0.32 -14.55 15 8 H 0.07 1.76 6.85 -52.48 -0.36 1.41 15 9 C 0.57 15.54 7.53 -12.99 -0.10 15.44 15 10 O -0.55 -16.89 12.36 5.19 0.06 -16.83 15 11 N -0.65 -14.51 3.06 -169.79 -0.52 -15.03 15 12 C 0.08 1.41 6.81 -2.22 -0.02 1.39 15 13 C 0.04 0.51 7.89 38.17 0.30 0.81 15 14 O -0.36 -6.25 11.19 -35.23 -0.39 -6.64 15 15 C 0.27 5.38 3.49 -3.67 -0.01 5.37 15 16 H 0.10 2.01 8.14 -51.93 -0.42 1.59 15 17 C 0.44 9.37 2.95 37.16 0.11 9.48 15 18 F -0.18 -3.99 17.18 2.25 0.04 -3.96 15 19 F -0.14 -3.57 13.86 2.25 0.03 -3.54 15 20 F -0.19 -3.76 17.28 2.25 0.04 -3.72 15 21 H 0.27 7.12 8.29 -40.82 -0.34 6.78 15 22 H 0.07 1.12 8.14 -51.93 -0.42 0.70 15 23 H 0.09 1.45 7.48 -51.93 -0.39 1.06 15 24 H 0.11 1.08 8.14 -51.93 -0.42 0.65 15 25 H 0.07 0.89 8.14 -51.93 -0.42 0.47 15 LS Contribution 236.05 15.07 3.56 3.56 Total: -1.00 -32.61 236.05 -3.26 -35.86 By element: Atomic # 1 Polarization: -1.21 SS G_CDS: -1.57 Total: -2.78 kcal Atomic # 6 Polarization: 20.26 SS G_CDS: -0.13 Total: 20.13 kcal Atomic # 7 Polarization: -36.42 SS G_CDS: 0.14 Total: -36.29 kcal Atomic # 8 Polarization: -23.14 SS G_CDS: -0.33 Total: -23.47 kcal Atomic # 9 Polarization: -11.32 SS G_CDS: 0.11 Total: -11.21 kcal Atomic # 14 Polarization: 19.23 SS G_CDS: -5.02 Total: 14.20 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -32.61 -3.26 -35.86 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000912088727.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -181.082 kcal (2) G-P(sol) polarization free energy of solvation -32.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -213.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -216.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds