Wall clock time and date at job start Sun Mar 29 2020 21:54:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30674 * 1 3 3 Si 1.86794 * 120.00315 * 2 1 4 4 H 1.48508 * 109.46687 * 269.99904 * 3 2 1 5 5 H 1.48503 * 109.47169 * 29.99616 * 3 2 1 6 6 H 1.48495 * 109.47370 * 150.00179 * 3 2 1 7 7 C 1.40051 * 119.99566 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99641 * 180.02562 * 7 2 1 9 9 C 1.46372 * 120.00240 * 359.97438 * 7 2 1 10 10 O 1.21693 * 119.99974 * 0.02562 * 9 7 2 11 11 N 1.34779 * 119.99948 * 179.97438 * 9 7 2 12 12 C 1.47969 * 126.93987 * 0.04795 * 11 9 7 13 13 C 1.54922 * 102.75425 * 201.19476 * 12 11 9 14 14 O 1.44646 * 102.34611 * 323.87879 * 13 12 11 15 15 C 1.43732 * 105.57496 * 37.53798 * 14 13 12 16 16 H 1.09001 * 109.71327 * 94.58588 * 15 14 13 17 17 C 1.53002 * 109.71135 * 215.12929 * 15 14 13 18 18 F 1.39897 * 109.47242 * 58.54688 * 17 15 14 19 19 F 1.39897 * 109.47075 * 178.54918 * 17 15 14 20 20 F 1.39905 * 109.47320 * 298.54672 * 17 15 14 21 21 H 0.96994 * 119.99745 * 0.02562 * 1 2 3 22 22 H 1.09007 * 110.75919 * 82.88103 * 12 11 9 23 23 H 1.09000 * 110.75544 * 319.51010 * 12 11 9 24 24 H 1.09002 * 110.83209 * 205.66932 * 13 12 11 25 25 H 1.08998 * 110.83362 * 82.09635 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6176 0.0000 4 1 2.4883 2.0462 -1.4002 5 1 1.4383 2.6527 0.7000 6 1 3.5383 1.4401 0.7000 7 6 2.0069 -1.2129 0.0005 8 1 3.0870 -1.2129 0.0010 9 6 1.2750 -2.4805 0.0017 10 8 0.0581 -2.4805 0.0017 11 7 1.9489 -3.6478 0.0017 12 6 3.4177 -3.8266 0.0016 13 6 3.5869 -5.2664 -0.5446 14 8 2.4509 -5.9514 0.0319 15 6 1.3722 -5.0020 0.0028 16 1 0.7772 -5.1491 -0.8986 17 6 0.4892 -5.1861 1.2386 18 9 1.2612 -5.0163 2.3929 19 9 -0.5396 -4.2382 1.2220 20 9 -0.0615 -6.4722 1.2309 21 1 -0.4849 0.8400 -0.0004 22 1 3.8166 -3.7479 1.0130 23 1 3.8948 -3.1038 -0.6603 24 1 4.5219 -5.7056 -0.1966 25 1 3.5342 -5.2767 -1.6333 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000912088727.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:41 Heat of formation + Delta-G solvation = -241.538119 kcal Electronic energy + Delta-G solvation = -18241.825984 eV Core-core repulsion = 14612.200734 eV Total energy + Delta-G solvation = -3629.625250 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.056 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -51.04359 -48.62047 -48.49922 -41.08227 -38.56121 -34.85658 -34.47197 -31.74568 -29.12158 -27.53922 -24.56540 -23.82609 -21.70713 -19.67041 -19.51324 -19.27175 -18.44177 -17.84433 -16.91385 -16.48020 -16.04381 -15.48586 -15.37012 -15.23910 -15.21378 -14.99941 -14.89137 -14.68588 -14.58874 -13.97154 -13.49363 -13.25561 -12.98983 -12.72301 -12.59331 -12.34066 -12.01377 -11.20602 -10.95717 -9.97554 -9.56483 -8.35755 -6.92950 1.41273 1.41414 1.53325 1.58994 2.05968 2.28345 2.35011 2.38932 2.83807 3.12366 3.53534 3.54465 3.76027 4.07407 4.10056 4.28233 4.68139 4.86056 5.02597 5.28617 5.48152 5.81843 6.16005 6.80250 7.18375 8.29450 8.58472 Molecular weight = 239.06amu Principal moments of inertia in cm(-1) A = 0.034426 B = 0.009525 C = 0.008098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.134978 B = 2938.898053 C = 3456.876031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.815 5.815 2 C 0.029 3.971 3 Si 1.001 2.999 4 H -0.259 1.259 5 H -0.277 1.277 6 H -0.247 1.247 7 C -0.553 4.553 8 H 0.095 0.905 9 C 0.552 3.448 10 O -0.595 6.595 11 N -0.662 5.662 12 C 0.074 3.926 13 C 0.044 3.956 14 O -0.361 6.361 15 C 0.272 3.728 16 H 0.107 0.893 17 C 0.432 3.568 18 F -0.187 7.187 19 F -0.168 7.168 20 F -0.181 7.181 21 H 0.277 0.723 22 H 0.072 0.928 23 H 0.105 0.895 24 H 0.151 0.849 25 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.293 -6.750 -1.172 11.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C -0.187 4.187 3 Si 0.820 3.180 4 H -0.183 1.183 5 H -0.202 1.202 6 H -0.170 1.170 7 C -0.589 4.589 8 H 0.113 0.887 9 C 0.361 3.639 10 O -0.479 6.479 11 N -0.407 5.407 12 C -0.049 4.049 13 C -0.031 4.031 14 O -0.278 6.278 15 C 0.126 3.874 16 H 0.124 0.876 17 C 0.375 3.625 18 F -0.169 7.169 19 F -0.150 7.150 20 F -0.163 7.163 21 H 0.087 0.913 22 H 0.091 0.909 23 H 0.123 0.877 24 H 0.168 0.832 25 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 8.386 -6.809 -1.069 10.855 hybrid contribution -0.343 0.674 0.325 0.823 sum 8.044 -6.135 -0.744 10.144 Atomic orbital electron populations 1.70171 1.09541 1.29323 1.35421 1.27006 0.95554 1.04943 0.91188 0.84961 0.78737 0.74769 0.79548 1.18317 1.20159 1.17035 1.21322 0.94859 0.88569 1.54161 0.88690 1.18570 0.86748 0.81993 0.76623 1.90682 1.15170 1.85979 1.56019 1.49675 1.08015 1.02786 1.80230 1.23148 0.80633 0.98517 1.02564 1.24399 0.89638 0.89355 0.99747 1.89117 1.21106 1.33577 1.83957 1.23075 0.89616 0.81838 0.92919 0.87575 1.21480 0.80766 0.73636 0.86573 1.93109 1.75222 1.95192 1.53338 1.93363 1.60707 1.64392 1.96518 1.93138 1.86843 1.39468 1.96802 0.91308 0.90945 0.87700 0.83151 0.88804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -48.20 11.83 21.84 0.26 -47.94 15 2 C 0.03 1.55 5.50 85.31 0.47 2.02 15 3 Si 1.00 38.82 29.56 68.60 2.03 40.85 15 4 H -0.26 -9.47 7.11 99.48 0.71 -8.77 15 5 H -0.28 -10.57 7.11 99.48 0.71 -9.86 15 6 H -0.25 -8.84 7.11 99.48 0.71 -8.13 15 7 C -0.55 -29.57 9.06 24.83 0.22 -29.35 15 8 H 0.10 4.45 6.85 -2.91 -0.02 4.43 15 9 C 0.55 30.76 7.53 86.36 0.65 31.41 15 10 O -0.59 -38.14 12.36 -4.33 -0.05 -38.19 15 11 N -0.66 -29.05 3.06 -908.82 -2.78 -31.83 15 12 C 0.07 2.29 6.81 86.75 0.59 2.88 15 13 C 0.04 1.01 7.89 72.64 0.57 1.59 15 14 O -0.36 -11.48 11.19 -148.98 -1.67 -13.14 15 15 C 0.27 10.75 3.49 86.25 0.30 11.05 15 16 H 0.11 4.12 8.14 -2.39 -0.02 4.10 15 17 C 0.43 18.59 2.95 71.98 0.21 18.81 15 18 F -0.19 -8.07 17.18 44.97 0.77 -7.30 15 19 F -0.17 -8.74 13.86 44.97 0.62 -8.11 15 20 F -0.18 -6.96 17.28 44.97 0.78 -6.19 15 21 H 0.28 14.85 8.29 -92.71 -0.77 14.08 15 22 H 0.07 2.20 8.14 -2.38 -0.02 2.18 15 23 H 0.10 2.99 7.48 -2.39 -0.02 2.97 15 24 H 0.15 2.22 8.14 -2.39 -0.02 2.21 15 25 H 0.09 1.86 8.14 -2.39 -0.02 1.84 15 Total: -1.00 -72.60 236.05 4.22 -68.38 By element: Atomic # 1 Polarization: 3.83 SS G_CDS: 1.24 Total: 5.06 kcal Atomic # 6 Polarization: 35.39 SS G_CDS: 3.02 Total: 38.41 kcal Atomic # 7 Polarization: -77.25 SS G_CDS: -2.52 Total: -79.77 kcal Atomic # 8 Polarization: -49.62 SS G_CDS: -1.72 Total: -51.34 kcal Atomic # 9 Polarization: -23.77 SS G_CDS: 2.17 Total: -21.60 kcal Atomic # 14 Polarization: 38.82 SS G_CDS: 2.03 Total: 40.85 kcal Total: -72.60 4.22 -68.38 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000912088727.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -173.154 kcal (2) G-P(sol) polarization free energy of solvation -72.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -245.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -241.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds