Wall clock time and date at job start Sun Mar 29 2020 22:04:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38906 * 120.74079 * 2 1 4 4 C 1.38028 * 119.34093 * 179.97438 * 3 2 1 5 5 N 1.31956 * 120.86089 * 359.97438 * 4 3 2 6 6 C 1.32461 * 121.61503 * 0.02562 * 5 4 3 7 7 S 1.76199 * 119.71233 * 179.97438 * 6 5 4 8 8 C 1.81398 * 103.00071 * 0.02562 * 7 6 5 9 9 C 1.53006 * 109.47199 * 179.97438 * 8 7 6 10 10 H 1.09000 * 109.46988 * 60.00250 * 9 8 7 11 11 O 1.42896 * 109.47067 * 300.00277 * 9 8 7 12 12 C 1.50701 * 109.46891 * 179.97438 * 9 8 7 13 13 H 1.07998 * 120.00525 * 0.02562 * 12 9 8 14 14 C 1.37880 * 119.99840 * 179.97438 * 12 9 8 15 15 N 1.31516 * 119.99704 * 0.02562 * 14 12 9 16 16 Si 1.86792 * 119.99992 * 180.02562 * 14 12 9 17 17 H 1.48499 * 109.47485 * 0.02562 * 16 14 12 18 18 H 1.48506 * 109.47094 * 120.00076 * 16 14 12 19 19 H 1.48503 * 109.47520 * 240.00125 * 16 14 12 20 20 C 1.38267 * 120.74621 * 180.24865 * 2 1 3 21 21 H 1.09008 * 109.46740 * 90.01160 * 1 2 3 22 22 H 1.09001 * 109.47105 * 209.99915 * 1 2 3 23 23 H 1.08998 * 109.47484 * 330.01094 * 1 2 3 24 24 H 1.08001 * 120.32963 * 0.02562 * 3 2 1 25 25 H 1.08002 * 119.56982 * 180.02562 * 4 3 2 26 26 H 1.08998 * 109.47085 * 299.99567 * 8 7 6 27 27 H 1.09000 * 109.46946 * 60.00083 * 8 7 6 28 28 H 0.96700 * 113.99612 * 299.99765 * 11 9 8 29 29 H 0.97003 * 119.99697 * 179.97438 * 15 14 12 30 30 H 1.08004 * 120.45359 * 359.97438 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2171 1.1939 0.0000 4 6 3.5969 1.1602 0.0005 5 7 4.2459 0.0112 0.0016 6 6 3.6053 -1.1481 0.0016 7 16 4.5223 -2.6527 0.0023 8 6 6.2439 -2.0812 0.0036 9 6 7.1825 -3.2896 0.0050 10 1 7.0003 -3.8921 -0.8850 11 8 6.9415 -4.0785 1.1718 12 6 8.6127 -2.8148 0.0054 13 1 8.8306 -1.7570 0.0052 14 6 9.6432 -3.7308 0.0071 15 7 9.3779 -5.0190 0.0079 16 14 11.4160 -3.1423 0.0084 17 1 11.4448 -1.6576 0.0079 18 1 12.1052 -3.6498 1.2220 19 1 12.1076 -3.6517 -1.2030 20 6 2.2139 -1.1883 -0.0052 21 1 -0.3633 -0.0002 -1.0278 22 1 -0.3633 -0.8900 0.5138 23 1 -0.3634 0.8900 0.5136 24 1 1.6946 2.1391 0.0004 25 1 4.1527 2.0862 0.0010 26 1 6.4276 -1.4792 -0.8863 27 1 6.4262 -1.4791 0.8937 28 1 7.0845 -3.6053 2.0029 29 1 10.1029 -5.6634 0.0087 30 1 1.6936 -2.1347 -0.0088 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000918808602.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:43 Heat of formation + Delta-G solvation = -31.118707 kcal Electronic energy + Delta-G solvation = -14081.304076 eV Core-core repulsion = 11581.246002 eV Total energy + Delta-G solvation = -2500.058074 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.89574 -35.88393 -33.95076 -32.17226 -31.13324 -29.68001 -27.87101 -25.35943 -23.57632 -22.22582 -20.94638 -17.28663 -17.01251 -16.39726 -15.87070 -14.65420 -14.59069 -14.49984 -14.22432 -13.98242 -13.52747 -13.06025 -12.86878 -12.67909 -12.36892 -11.59944 -11.45823 -11.19239 -10.92929 -10.79424 -10.18422 -9.83474 -9.65872 -9.45005 -9.37966 -9.12935 -8.62400 -8.28168 -7.10058 -6.06050 -4.25392 1.12491 1.30239 1.98755 2.97448 3.25610 3.33923 3.38086 3.78928 4.36807 4.58084 4.66905 4.99861 5.10941 5.21288 5.23340 5.35299 5.44674 5.67112 5.83333 5.94496 5.95981 6.13183 6.26974 6.29230 6.67491 6.76121 7.58885 7.78086 7.95667 8.05960 8.76440 9.30921 9.51064 10.98164 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.053126 B = 0.005035 C = 0.004669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 526.922536 B = 5560.170951 C = 5994.983645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.030 4.030 3 C -0.198 4.198 4 C 0.117 3.883 5 N -0.494 5.494 6 C 0.128 3.872 7 S -0.074 6.074 8 C -0.105 4.105 9 C 0.242 3.758 10 H 0.065 0.935 11 O -0.559 6.559 12 C -0.568 4.568 13 H 0.060 0.940 14 C 0.080 3.920 15 N -0.857 5.857 16 Si 0.894 3.106 17 H -0.272 1.272 18 H -0.282 1.282 19 H -0.282 1.282 20 C -0.162 4.162 21 H 0.075 0.925 22 H 0.071 0.929 23 H 0.070 0.930 24 H 0.130 0.870 25 H 0.154 0.846 26 H 0.085 0.915 27 H 0.080 0.920 28 H 0.348 0.652 29 H 0.262 0.738 30 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.806 10.167 0.261 17.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.040 4.040 3 C -0.222 4.222 4 C -0.043 4.043 5 N -0.208 5.208 6 C -0.121 4.121 7 S 0.171 5.829 8 C -0.253 4.253 9 C 0.183 3.817 10 H 0.083 0.917 11 O -0.361 6.361 12 C -0.608 4.608 13 H 0.078 0.922 14 C -0.127 4.127 15 N -0.492 5.492 16 Si 0.721 3.279 17 H -0.196 1.196 18 H -0.208 1.208 19 H -0.208 1.208 20 C -0.189 4.189 21 H 0.094 0.906 22 H 0.090 0.910 23 H 0.089 0.911 24 H 0.148 0.852 25 H 0.171 0.829 26 H 0.104 0.896 27 H 0.098 0.902 28 H 0.191 0.809 29 H 0.071 0.929 30 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -14.260 8.277 -0.203 16.489 hybrid contribution 0.714 2.203 0.324 2.339 sum -13.546 10.480 0.121 17.127 Atomic orbital electron populations 1.20807 0.90297 1.03181 1.02766 1.20182 0.96445 0.92756 0.94603 1.21852 0.95506 0.98326 1.06527 1.22712 0.91833 0.95996 0.93747 1.68211 1.39897 0.97615 1.15079 1.23622 0.94135 0.97668 0.96635 1.85918 1.04791 1.03038 1.89129 1.24755 0.90078 1.05107 1.05409 1.19253 0.90280 0.85341 0.86858 0.91746 1.86588 1.91293 1.42926 1.15294 1.21557 0.90515 0.93380 1.55307 0.92169 1.25040 0.99239 0.94734 0.93647 1.70095 1.32067 1.00474 1.46603 0.86529 0.84525 0.79084 0.77752 1.19605 1.20780 1.20775 1.21539 0.93130 0.98943 1.05309 0.90595 0.91013 0.91131 0.85186 0.82898 0.89649 0.90163 0.80857 0.92855 0.84650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.90 10.06 36.01 0.36 -0.54 16 2 C -0.03 -0.36 5.91 -104.36 -0.62 -0.98 16 3 C -0.20 -2.27 9.81 -39.41 -0.39 -2.65 16 4 C 0.12 1.60 11.17 -17.57 -0.20 1.40 16 5 N -0.49 -8.57 9.43 -12.11 -0.11 -8.69 16 6 C 0.13 2.21 7.00 -16.92 -0.12 2.09 16 7 S -0.07 -1.43 21.55 -107.50 -2.32 -3.74 16 8 C -0.10 -2.27 4.84 37.16 0.18 -2.09 16 9 C 0.24 6.20 2.87 -27.88 -0.08 6.12 16 10 H 0.06 1.81 8.14 -51.93 -0.42 1.39 16 11 O -0.56 -14.44 12.33 -35.23 -0.43 -14.88 16 12 C -0.57 -15.59 8.76 -34.44 -0.30 -15.89 16 13 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 14 C 0.08 2.24 5.40 -17.82 -0.10 2.14 16 15 N -0.86 -25.24 12.84 55.43 0.71 -24.53 16 16 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 16 17 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 20 C -0.16 -2.31 9.54 -39.21 -0.37 -2.69 16 21 H 0.08 0.53 8.14 -51.92 -0.42 0.11 16 22 H 0.07 0.52 8.10 -51.93 -0.42 0.10 16 23 H 0.07 0.46 8.10 -51.93 -0.42 0.04 16 24 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 25 H 0.15 1.63 8.06 -52.49 -0.42 1.21 16 26 H 0.08 1.86 8.14 -51.92 -0.42 1.44 16 27 H 0.08 1.73 8.14 -51.92 -0.42 1.31 16 28 H 0.35 8.02 9.04 45.56 0.41 8.43 16 29 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 30 H 0.14 1.71 8.06 -52.48 -0.42 1.29 16 LS Contribution 280.41 15.07 4.23 4.23 Total: -1.00 -31.32 280.41 -7.51 -38.82 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -2.93 Total: 5.81 kcal Atomic # 6 Polarization: -11.46 SS G_CDS: -1.63 Total: -13.09 kcal Atomic # 7 Polarization: -33.82 SS G_CDS: 0.60 Total: -33.22 kcal Atomic # 8 Polarization: -14.44 SS G_CDS: -0.43 Total: -14.88 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Atomic # 16 Polarization: -1.43 SS G_CDS: -2.32 Total: -3.74 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -31.32 -7.51 -38.82 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000918808602.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.704 kcal (2) G-P(sol) polarization free energy of solvation -31.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds