Wall clock time and date at job start Sun Mar 29 2020 22:31:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50706 * 119.99849 * 2 1 4 4 N 1.46902 * 109.47232 * 123.97076 * 3 2 1 5 5 C 1.46902 * 110.99618 * 62.69577 * 4 3 2 6 6 C 1.50700 * 109.46921 * 66.05324 * 5 4 3 7 7 H 1.08003 * 119.99804 * 359.97438 * 6 5 4 8 8 C 1.37879 * 119.99967 * 180.02562 * 6 5 4 9 9 N 1.31510 * 120.00177 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00017 * 179.97438 * 8 6 5 11 11 H 1.48505 * 109.46943 * 359.97438 * 10 8 6 12 12 H 1.48501 * 109.47231 * 119.99326 * 10 8 6 13 13 H 1.48496 * 109.47072 * 239.99875 * 10 8 6 14 14 C 1.46904 * 110.99697 * 298.74956 * 4 3 2 15 15 C 1.50696 * 109.46765 * 289.43410 * 14 4 3 16 16 N 1.29414 * 125.69895 * 93.03438 * 15 14 4 17 17 N 1.26394 * 116.47928 * 179.74914 * 16 15 14 18 18 C 1.29414 * 116.47433 * 0.52855 * 17 16 15 19 19 S 1.71216 * 108.60701 * 359.51125 * 18 17 16 20 20 H 1.08001 * 120.00142 * 179.97438 * 1 2 3 21 21 H 1.07998 * 120.00180 * 0.02562 * 1 2 3 22 22 H 1.07997 * 120.00471 * 179.97438 * 2 1 3 23 23 H 1.08995 * 109.46929 * 3.97099 * 3 2 1 24 24 H 1.08996 * 109.46849 * 243.96748 * 3 2 1 25 25 H 1.09005 * 109.47061 * 186.04619 * 5 4 3 26 26 H 1.09000 * 109.47615 * 306.04645 * 5 4 3 27 27 H 0.96994 * 120.00133 * 180.02562 * 9 8 6 28 28 H 1.09002 * 109.46667 * 169.43912 * 14 4 3 29 29 H 1.08993 * 109.47479 * 49.44027 * 14 4 3 30 30 H 1.08006 * 125.69862 * 179.76547 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9785 1.3423 1.1486 5 6 3.9866 0.2781 1.0531 6 6 4.8840 0.5408 -0.1287 7 1 4.7214 1.4111 -0.7473 8 6 5.9119 -0.3304 -0.4209 9 7 6.1096 -1.3904 0.3319 10 14 7.0238 -0.0052 -1.8863 11 1 6.5939 1.2430 -2.5664 12 1 8.4262 0.1422 -1.4206 13 1 6.9349 -1.1423 -2.8372 14 6 2.2383 1.2542 2.4144 15 6 1.4797 2.5361 2.6430 16 7 0.2537 2.7605 2.2946 17 7 -0.2128 3.9006 2.5773 18 6 0.5906 4.7209 3.1745 19 16 2.0962 3.9394 3.4061 20 1 -0.5400 -0.9353 -0.0004 21 1 -0.5400 0.9353 -0.0004 22 1 1.8500 -0.9352 0.0004 23 1 1.3573 2.1323 0.0712 24 1 2.6357 1.3943 -0.9234 25 1 4.5832 0.2598 1.9653 26 1 3.4892 -0.6833 0.9251 27 1 6.8330 -2.0031 0.1266 28 1 2.9386 1.0953 3.2345 29 1 1.5376 0.4206 2.3683 30 1 0.3500 5.7286 3.4797 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930540738.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:31:32 Heat of formation + Delta-G solvation = 94.096325 kcal Electronic energy + Delta-G solvation = -14755.660559 eV Core-core repulsion = 12293.324967 eV Total energy + Delta-G solvation = -2462.335591 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.079 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.06734 -37.55121 -32.95523 -32.71947 -31.26853 -28.36823 -26.73029 -25.55345 -23.51790 -21.27695 -20.35841 -19.17314 -18.58299 -16.45598 -15.79865 -15.62621 -15.06435 -14.75901 -14.19779 -13.77694 -13.35080 -13.09638 -12.69355 -12.17502 -11.62025 -11.36553 -10.87529 -10.83129 -10.72572 -10.57919 -10.28946 -10.09503 -9.99364 -9.73454 -9.53338 -9.35152 -8.78632 -8.50700 -7.44742 -6.09721 -4.10949 0.61835 1.13353 1.59507 2.72926 2.84231 3.27632 3.35597 3.40166 4.23041 4.39195 4.79344 5.06692 5.18588 5.27127 5.51763 5.54418 5.77863 5.87662 5.94740 6.14585 6.45463 6.62300 6.99500 7.17016 7.27516 7.35067 7.69528 7.92127 8.03927 8.39285 8.71948 8.95876 9.53471 11.01096 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.030448 B = 0.006741 C = 0.006050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.372738 B = 4152.554934 C = 4626.822390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.171 4.171 3 C 0.087 3.913 4 N -0.524 5.524 5 C 0.191 3.809 6 C -0.507 4.507 7 H 0.064 0.936 8 C 0.057 3.943 9 N -0.897 5.897 10 Si 0.897 3.103 11 H -0.272 1.272 12 H -0.284 1.284 13 H -0.285 1.285 14 C 0.122 3.878 15 C 0.022 3.978 16 N -0.267 5.267 17 N -0.263 5.263 18 C -0.071 4.071 19 S 0.186 5.814 20 H 0.086 0.914 21 H 0.095 0.905 22 H 0.112 0.888 23 H 0.060 0.940 24 H 0.092 0.908 25 H 0.032 0.968 26 H 0.003 0.997 27 H 0.261 0.739 28 H 0.094 0.906 29 H 0.068 0.932 30 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.526 8.295 5.993 12.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.191 4.191 3 C -0.041 4.041 4 N -0.248 5.248 5 C 0.066 3.934 6 C -0.545 4.545 7 H 0.082 0.918 8 C -0.144 4.144 9 N -0.537 5.537 10 Si 0.725 3.275 11 H -0.197 1.197 12 H -0.210 1.210 13 H -0.211 1.211 14 C -0.010 4.010 15 C -0.258 4.258 16 N -0.106 5.106 17 N -0.099 5.099 18 C -0.370 4.370 19 S 0.427 5.573 20 H 0.104 0.896 21 H 0.113 0.887 22 H 0.129 0.871 23 H 0.078 0.922 24 H 0.110 0.890 25 H 0.050 0.950 26 H 0.021 0.979 27 H 0.071 0.929 28 H 0.112 0.888 29 H 0.086 0.914 30 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -7.474 8.533 5.872 12.773 hybrid contribution 0.158 -0.637 -0.769 1.011 sum -7.315 7.896 5.104 11.913 Atomic orbital electron populations 1.23746 0.95958 1.01028 1.02657 1.23749 0.96215 1.00935 0.98175 1.21283 0.93909 0.93102 0.95780 1.62475 1.12992 1.50815 0.98487 1.19838 0.88327 0.86972 0.98249 1.21130 1.12931 1.08955 1.11514 0.91763 1.24956 0.97551 0.95019 0.96907 1.69951 1.31694 1.13247 1.38797 0.86450 0.80427 0.78219 0.82401 1.19654 1.20982 1.21085 1.20621 0.95797 0.88397 0.96226 1.29501 0.94486 1.02577 0.99194 1.71483 1.09527 1.11189 1.18384 1.71416 1.29391 0.97354 1.11762 1.30333 0.94625 1.06791 1.05230 1.83802 1.14959 1.06657 1.51923 0.89592 0.88711 0.87052 0.92174 0.88997 0.95007 0.97885 0.92893 0.88785 0.91374 0.77577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.24 14.32 29.01 0.42 -2.83 16 2 C -0.17 -3.19 7.47 -36.02 -0.27 -3.46 16 3 C 0.09 1.71 5.47 -4.97 -0.03 1.69 16 4 N -0.52 -10.70 4.66 -238.96 -1.11 -11.81 16 5 C 0.19 4.62 4.55 -4.97 -0.02 4.60 16 6 C -0.51 -13.54 8.48 -34.44 -0.29 -13.83 16 7 H 0.06 1.72 7.12 -52.48 -0.37 1.35 16 8 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 9 N -0.90 -25.64 13.29 55.43 0.74 -24.90 16 10 Si 0.90 21.08 29.54 -169.99 -5.02 16.06 16 11 H -0.27 -6.31 7.11 56.52 0.40 -5.90 16 12 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 13 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 14 C 0.12 2.11 5.43 -4.98 -0.03 2.09 16 15 C 0.02 0.35 6.28 -13.30 -0.08 0.26 16 16 N -0.27 -4.59 11.13 32.58 0.36 -4.22 16 17 N -0.26 -4.15 11.66 29.45 0.34 -3.80 16 18 C -0.07 -0.85 12.39 51.74 0.64 -0.20 16 19 S 0.19 2.32 23.06 -107.50 -2.48 -0.16 16 20 H 0.09 1.28 8.06 -52.49 -0.42 0.86 16 21 H 0.09 1.58 7.84 -52.49 -0.41 1.17 16 22 H 0.11 2.25 6.76 -52.49 -0.35 1.89 16 23 H 0.06 1.16 6.64 -51.93 -0.34 0.81 16 24 H 0.09 1.95 6.79 -51.93 -0.35 1.60 16 25 H 0.03 0.81 7.88 -51.93 -0.41 0.41 16 26 H 0.00 0.09 6.27 -51.93 -0.33 -0.24 16 27 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 28 H 0.09 1.51 7.84 -51.93 -0.41 1.10 16 29 H 0.07 1.21 6.80 -51.93 -0.35 0.85 16 30 H 0.21 1.57 8.06 -52.48 -0.42 1.14 16 LS Contribution 272.83 15.07 4.11 4.11 Total: -1.00 -29.52 272.83 -6.13 -35.66 By element: Atomic # 1 Polarization: 2.61 SS G_CDS: -3.31 Total: -0.70 kcal Atomic # 6 Polarization: -10.46 SS G_CDS: 0.24 Total: -10.22 kcal Atomic # 7 Polarization: -45.07 SS G_CDS: 0.33 Total: -44.74 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 16 Polarization: 2.32 SS G_CDS: -2.48 Total: -0.16 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -29.52 -6.13 -35.66 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930540738.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.755 kcal (2) G-P(sol) polarization free energy of solvation -29.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.658 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds