Wall clock time and date at job start Sun Mar 29 2020 22:31:32
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.30999 * 1
3 3 C 1.50706 * 119.99849 * 2 1
4 4 N 1.46902 * 109.47232 * 123.97076 * 3 2 1
5 5 C 1.46902 * 110.99618 * 62.69577 * 4 3 2
6 6 C 1.50700 * 109.46921 * 66.05324 * 5 4 3
7 7 H 1.08003 * 119.99804 * 359.97438 * 6 5 4
8 8 C 1.37879 * 119.99967 * 180.02562 * 6 5 4
9 9 N 1.31510 * 120.00177 * 359.97438 * 8 6 5
10 10 Si 1.86800 * 120.00017 * 179.97438 * 8 6 5
11 11 H 1.48505 * 109.46943 * 359.97438 * 10 8 6
12 12 H 1.48501 * 109.47231 * 119.99326 * 10 8 6
13 13 H 1.48496 * 109.47072 * 239.99875 * 10 8 6
14 14 C 1.46904 * 110.99697 * 298.74956 * 4 3 2
15 15 C 1.50696 * 109.46765 * 289.43410 * 14 4 3
16 16 N 1.29414 * 125.69895 * 93.03438 * 15 14 4
17 17 N 1.26394 * 116.47928 * 179.74914 * 16 15 14
18 18 C 1.29414 * 116.47433 * 0.52855 * 17 16 15
19 19 S 1.71216 * 108.60701 * 359.51125 * 18 17 16
20 20 H 1.08001 * 120.00142 * 179.97438 * 1 2 3
21 21 H 1.07998 * 120.00180 * 0.02562 * 1 2 3
22 22 H 1.07997 * 120.00471 * 179.97438 * 2 1 3
23 23 H 1.08995 * 109.46929 * 3.97099 * 3 2 1
24 24 H 1.08996 * 109.46849 * 243.96748 * 3 2 1
25 25 H 1.09005 * 109.47061 * 186.04619 * 5 4 3
26 26 H 1.09000 * 109.47615 * 306.04645 * 5 4 3
27 27 H 0.96994 * 120.00133 * 180.02562 * 9 8 6
28 28 H 1.09002 * 109.46667 * 169.43912 * 14 4 3
29 29 H 1.08993 * 109.47479 * 49.44027 * 14 4 3
30 30 H 1.08006 * 125.69862 * 179.76547 * 18 17 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.3100 0.0000 0.0000
3 6 2.0635 1.3052 0.0000
4 7 2.9785 1.3423 1.1486
5 6 3.9866 0.2781 1.0531
6 6 4.8840 0.5408 -0.1287
7 1 4.7214 1.4111 -0.7473
8 6 5.9119 -0.3304 -0.4209
9 7 6.1096 -1.3904 0.3319
10 14 7.0238 -0.0052 -1.8863
11 1 6.5939 1.2430 -2.5664
12 1 8.4262 0.1422 -1.4206
13 1 6.9349 -1.1423 -2.8372
14 6 2.2383 1.2542 2.4144
15 6 1.4797 2.5361 2.6430
16 7 0.2537 2.7605 2.2946
17 7 -0.2128 3.9006 2.5773
18 6 0.5906 4.7209 3.1745
19 16 2.0962 3.9394 3.4061
20 1 -0.5400 -0.9353 -0.0004
21 1 -0.5400 0.9353 -0.0004
22 1 1.8500 -0.9352 0.0004
23 1 1.3573 2.1323 0.0712
24 1 2.6357 1.3943 -0.9234
25 1 4.5832 0.2598 1.9653
26 1 3.4892 -0.6833 0.9251
27 1 6.8330 -2.0031 0.1266
28 1 2.9386 1.0953 3.2345
29 1 1.5376 0.4206 2.3683
30 1 0.3500 5.7286 3.4797
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000930540738.mol2 30
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 22:31:32
Heat of formation + Delta-G solvation = 94.096325 kcal
Electronic energy + Delta-G solvation = -14755.660559 eV
Core-core repulsion = 12293.324967 eV
Total energy + Delta-G solvation = -2462.335591 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 239.079 amu
Computer time = 0.18 seconds
Orbital eigenvalues (eV)
-41.06734 -37.55121 -32.95523 -32.71947 -31.26853 -28.36823 -26.73029 -25.55345
-23.51790 -21.27695 -20.35841 -19.17314 -18.58299 -16.45598 -15.79865 -15.62621
-15.06435 -14.75901 -14.19779 -13.77694 -13.35080 -13.09638 -12.69355 -12.17502
-11.62025 -11.36553 -10.87529 -10.83129 -10.72572 -10.57919 -10.28946 -10.09503
-9.99364 -9.73454 -9.53338 -9.35152 -8.78632 -8.50700 -7.44742 -6.09721
-4.10949 0.61835 1.13353 1.59507 2.72926 2.84231 3.27632 3.35597
3.40166 4.23041 4.39195 4.79344 5.06692 5.18588 5.27127 5.51763
5.54418 5.77863 5.87662 5.94740 6.14585 6.45463 6.62300 6.99500
7.17016 7.27516 7.35067 7.69528 7.92127 8.03927 8.39285 8.71948
8.95876 9.53471 11.01096
Molecular weight = 239.08amu
Principal moments of inertia in cm(-1)
A = 0.030448 B = 0.006741 C = 0.006050
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 919.372738 B = 4152.554934 C = 4626.822390
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.196 4.196
2 C -0.171 4.171
3 C 0.087 3.913
4 N -0.524 5.524
5 C 0.191 3.809
6 C -0.507 4.507
7 H 0.064 0.936
8 C 0.057 3.943
9 N -0.897 5.897
10 Si 0.897 3.103
11 H -0.272 1.272
12 H -0.284 1.284
13 H -0.285 1.285
14 C 0.122 3.878
15 C 0.022 3.978
16 N -0.267 5.267
17 N -0.263 5.263
18 C -0.071 4.071
19 S 0.186 5.814
20 H 0.086 0.914
21 H 0.095 0.905
22 H 0.112 0.888
23 H 0.060 0.940
24 H 0.092 0.908
25 H 0.032 0.968
26 H 0.003 0.997
27 H 0.261 0.739
28 H 0.094 0.906
29 H 0.068 0.932
30 H 0.208 0.792
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.526 8.295 5.993 12.703
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.234 4.234
2 C -0.191 4.191
3 C -0.041 4.041
4 N -0.248 5.248
5 C 0.066 3.934
6 C -0.545 4.545
7 H 0.082 0.918
8 C -0.144 4.144
9 N -0.537 5.537
10 Si 0.725 3.275
11 H -0.197 1.197
12 H -0.210 1.210
13 H -0.211 1.211
14 C -0.010 4.010
15 C -0.258 4.258
16 N -0.106 5.106
17 N -0.099 5.099
18 C -0.370 4.370
19 S 0.427 5.573
20 H 0.104 0.896
21 H 0.113 0.887
22 H 0.129 0.871
23 H 0.078 0.922
24 H 0.110 0.890
25 H 0.050 0.950
26 H 0.021 0.979
27 H 0.071 0.929
28 H 0.112 0.888
29 H 0.086 0.914
30 H 0.224 0.776
Dipole moment (debyes) X Y Z Total
from point charges -7.474 8.533 5.872 12.773
hybrid contribution 0.158 -0.637 -0.769 1.011
sum -7.315 7.896 5.104 11.913
Atomic orbital electron populations
1.23746 0.95958 1.01028 1.02657 1.23749 0.96215 1.00935 0.98175
1.21283 0.93909 0.93102 0.95780 1.62475 1.12992 1.50815 0.98487
1.19838 0.88327 0.86972 0.98249 1.21130 1.12931 1.08955 1.11514
0.91763 1.24956 0.97551 0.95019 0.96907 1.69951 1.31694 1.13247
1.38797 0.86450 0.80427 0.78219 0.82401 1.19654 1.20982 1.21085
1.20621 0.95797 0.88397 0.96226 1.29501 0.94486 1.02577 0.99194
1.71483 1.09527 1.11189 1.18384 1.71416 1.29391 0.97354 1.11762
1.30333 0.94625 1.06791 1.05230 1.83802 1.14959 1.06657 1.51923
0.89592 0.88711 0.87052 0.92174 0.88997 0.95007 0.97885 0.92893
0.88785 0.91374 0.77577
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.20 -3.24 14.32 29.01 0.42 -2.83 16
2 C -0.17 -3.19 7.47 -36.02 -0.27 -3.46 16
3 C 0.09 1.71 5.47 -4.97 -0.03 1.69 16
4 N -0.52 -10.70 4.66 -238.96 -1.11 -11.81 16
5 C 0.19 4.62 4.55 -4.97 -0.02 4.60 16
6 C -0.51 -13.54 8.48 -34.44 -0.29 -13.83 16
7 H 0.06 1.72 7.12 -52.48 -0.37 1.35 16
8 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16
9 N -0.90 -25.64 13.29 55.43 0.74 -24.90 16
10 Si 0.90 21.08 29.54 -169.99 -5.02 16.06 16
11 H -0.27 -6.31 7.11 56.52 0.40 -5.90 16
12 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16
13 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16
14 C 0.12 2.11 5.43 -4.98 -0.03 2.09 16
15 C 0.02 0.35 6.28 -13.30 -0.08 0.26 16
16 N -0.27 -4.59 11.13 32.58 0.36 -4.22 16
17 N -0.26 -4.15 11.66 29.45 0.34 -3.80 16
18 C -0.07 -0.85 12.39 51.74 0.64 -0.20 16
19 S 0.19 2.32 23.06 -107.50 -2.48 -0.16 16
20 H 0.09 1.28 8.06 -52.49 -0.42 0.86 16
21 H 0.09 1.58 7.84 -52.49 -0.41 1.17 16
22 H 0.11 2.25 6.76 -52.49 -0.35 1.89 16
23 H 0.06 1.16 6.64 -51.93 -0.34 0.81 16
24 H 0.09 1.95 6.79 -51.93 -0.35 1.60 16
25 H 0.03 0.81 7.88 -51.93 -0.41 0.41 16
26 H 0.00 0.09 6.27 -51.93 -0.33 -0.24 16
27 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16
28 H 0.09 1.51 7.84 -51.93 -0.41 1.10 16
29 H 0.07 1.21 6.80 -51.93 -0.35 0.85 16
30 H 0.21 1.57 8.06 -52.48 -0.42 1.14 16
LS Contribution 272.83 15.07 4.11 4.11
Total: -1.00 -29.52 272.83 -6.13 -35.66
By element:
Atomic # 1 Polarization: 2.61 SS G_CDS: -3.31 Total: -0.70 kcal
Atomic # 6 Polarization: -10.46 SS G_CDS: 0.24 Total: -10.22 kcal
Atomic # 7 Polarization: -45.07 SS G_CDS: 0.33 Total: -44.74 kcal
Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal
Atomic # 16 Polarization: 2.32 SS G_CDS: -2.48 Total: -0.16 kcal
Total LS contribution 4.11 Total: 4.11 kcal
Total: -29.52 -6.13 -35.66 kcal
The number of atoms in the molecule is 30
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000930540738.mol2 30
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 129.755 kcal
(2) G-P(sol) polarization free energy of solvation -29.525 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.230 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.134 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.658 kcal
(6) G-S(sol) free energy of system = (1) + (5) 94.096 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.18 seconds