Wall clock time and date at job start Sun Mar 29 2020 22:31:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50706 * 119.99849 * 2 1 4 4 N 1.46902 * 109.47232 * 123.97076 * 3 2 1 5 5 C 1.46902 * 110.99618 * 62.69577 * 4 3 2 6 6 C 1.50700 * 109.46921 * 66.05324 * 5 4 3 7 7 H 1.08003 * 119.99804 * 359.97438 * 6 5 4 8 8 C 1.37879 * 119.99967 * 180.02562 * 6 5 4 9 9 N 1.31510 * 120.00177 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00017 * 179.97438 * 8 6 5 11 11 H 1.48505 * 109.46943 * 359.97438 * 10 8 6 12 12 H 1.48501 * 109.47231 * 119.99326 * 10 8 6 13 13 H 1.48496 * 109.47072 * 239.99875 * 10 8 6 14 14 C 1.46904 * 110.99697 * 298.74956 * 4 3 2 15 15 C 1.50696 * 109.46765 * 289.43410 * 14 4 3 16 16 N 1.29414 * 125.69895 * 93.03438 * 15 14 4 17 17 N 1.26394 * 116.47928 * 179.74914 * 16 15 14 18 18 C 1.29414 * 116.47433 * 0.52855 * 17 16 15 19 19 S 1.71216 * 108.60701 * 359.51125 * 18 17 16 20 20 H 1.08001 * 120.00142 * 179.97438 * 1 2 3 21 21 H 1.07998 * 120.00180 * 0.02562 * 1 2 3 22 22 H 1.07997 * 120.00471 * 179.97438 * 2 1 3 23 23 H 1.08995 * 109.46929 * 3.97099 * 3 2 1 24 24 H 1.08996 * 109.46849 * 243.96748 * 3 2 1 25 25 H 1.09005 * 109.47061 * 186.04619 * 5 4 3 26 26 H 1.09000 * 109.47615 * 306.04645 * 5 4 3 27 27 H 0.96994 * 120.00133 * 180.02562 * 9 8 6 28 28 H 1.09002 * 109.46667 * 169.43912 * 14 4 3 29 29 H 1.08993 * 109.47479 * 49.44027 * 14 4 3 30 30 H 1.08006 * 125.69862 * 179.76547 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9785 1.3423 1.1486 5 6 3.9866 0.2781 1.0531 6 6 4.8840 0.5408 -0.1287 7 1 4.7214 1.4111 -0.7473 8 6 5.9119 -0.3304 -0.4209 9 7 6.1096 -1.3904 0.3319 10 14 7.0238 -0.0052 -1.8863 11 1 6.5939 1.2430 -2.5664 12 1 8.4262 0.1422 -1.4206 13 1 6.9349 -1.1423 -2.8372 14 6 2.2383 1.2542 2.4144 15 6 1.4797 2.5361 2.6430 16 7 0.2537 2.7605 2.2946 17 7 -0.2128 3.9006 2.5773 18 6 0.5906 4.7209 3.1745 19 16 2.0962 3.9394 3.4061 20 1 -0.5400 -0.9353 -0.0004 21 1 -0.5400 0.9353 -0.0004 22 1 1.8500 -0.9352 0.0004 23 1 1.3573 2.1323 0.0712 24 1 2.6357 1.3943 -0.9234 25 1 4.5832 0.2598 1.9653 26 1 3.4892 -0.6833 0.9251 27 1 6.8330 -2.0031 0.1266 28 1 2.9386 1.0953 3.2345 29 1 1.5376 0.4206 2.3683 30 1 0.3500 5.7286 3.4797 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930540738.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:31:32 Heat of formation + Delta-G solvation = 73.533158 kcal Electronic energy + Delta-G solvation = -14756.552244 eV Core-core repulsion = 12293.324967 eV Total energy + Delta-G solvation = -2463.227277 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.079 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.21036 -39.13850 -34.92264 -34.12517 -32.70576 -29.83256 -28.43815 -26.93560 -25.19189 -22.91698 -21.54066 -20.55083 -19.87349 -18.40636 -17.15180 -16.93003 -16.73466 -16.24804 -15.81505 -15.29078 -14.84187 -14.31163 -14.04601 -13.98099 -13.26940 -13.07901 -12.69962 -12.61337 -12.33126 -12.22288 -11.89947 -11.45915 -11.26404 -11.21859 -10.89827 -10.60401 -10.58960 -10.24437 -9.12408 -8.18539 -6.26520 -0.45409 0.09225 0.52694 1.38457 1.41964 1.43715 1.55632 1.61048 2.42000 3.04299 3.15513 3.47180 3.91048 3.93563 4.10165 4.25248 4.47036 4.52873 4.61391 4.64071 4.94716 5.04345 5.21232 5.31347 5.63313 5.74266 5.81800 6.06127 6.21718 6.51636 6.87515 7.42179 7.60957 8.92451 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.030448 B = 0.006741 C = 0.006050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.372738 B = 4152.554934 C = 4626.822390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.193 4.193 3 C 0.097 3.903 4 N -0.527 5.527 5 C 0.207 3.793 6 C -0.518 4.518 7 H 0.060 0.940 8 C 0.007 3.993 9 N -0.931 5.931 10 Si 0.962 3.038 11 H -0.266 1.266 12 H -0.278 1.278 13 H -0.282 1.282 14 C 0.127 3.873 15 C -0.013 4.013 16 N -0.287 5.287 17 N -0.299 5.299 18 C -0.049 4.049 19 S 0.240 5.760 20 H 0.107 0.893 21 H 0.099 0.901 22 H 0.091 0.909 23 H 0.067 0.933 24 H 0.070 0.930 25 H 0.014 0.986 26 H -0.018 1.018 27 H 0.264 0.736 28 H 0.102 0.898 29 H 0.060 0.940 30 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.978 10.031 6.178 14.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.213 4.213 3 C -0.031 4.031 4 N -0.251 5.251 5 C 0.081 3.919 6 C -0.556 4.556 7 H 0.078 0.922 8 C -0.191 4.191 9 N -0.572 5.572 10 Si 0.787 3.213 11 H -0.191 1.191 12 H -0.204 1.204 13 H -0.207 1.207 14 C -0.004 4.004 15 C -0.292 4.292 16 N -0.127 5.127 17 N -0.135 5.135 18 C -0.347 4.347 19 S 0.481 5.519 20 H 0.125 0.875 21 H 0.117 0.883 22 H 0.109 0.891 23 H 0.085 0.915 24 H 0.088 0.912 25 H 0.032 0.968 26 H 0.000 1.000 27 H 0.073 0.927 28 H 0.120 0.880 29 H 0.078 0.922 30 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges -7.941 10.283 6.063 14.337 hybrid contribution 0.219 -1.068 -0.737 1.316 sum -7.722 9.216 5.326 13.150 Atomic orbital electron populations 1.23867 0.95004 1.02157 0.99182 1.23476 0.96867 0.99507 1.01408 1.21116 0.93513 0.93926 0.94529 1.62328 1.13505 1.49013 1.00257 1.19461 0.88700 0.87190 0.96530 1.21417 1.13386 1.08706 1.12139 0.92202 1.25762 0.99016 0.94786 0.99529 1.70059 1.32468 1.14158 1.40470 0.85442 0.78538 0.78185 0.79109 1.19052 1.20371 1.20745 1.20491 0.95620 0.89574 0.94760 1.29148 0.94920 1.03575 1.01576 1.71441 1.10122 1.12287 1.18805 1.71390 1.30502 0.97660 1.13976 1.31070 0.93720 1.07763 1.02185 1.83608 1.14203 1.04070 1.50019 0.87470 0.88301 0.89141 0.91482 0.91207 0.96814 0.99981 0.92728 0.88030 0.92170 0.73116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.28 14.32 67.78 0.97 -4.31 16 2 C -0.19 -7.29 7.47 25.65 0.19 -7.10 16 3 C 0.10 3.88 5.47 85.56 0.47 4.35 16 4 N -0.53 -21.93 4.66 -909.93 -4.24 -26.17 16 5 C 0.21 10.36 4.55 85.56 0.39 10.75 16 6 C -0.52 -28.23 8.48 25.60 0.22 -28.01 16 7 H 0.06 3.25 7.12 -2.91 -0.02 3.23 16 8 C 0.01 0.41 5.46 84.66 0.46 0.87 16 9 N -0.93 -54.10 13.29 21.45 0.28 -53.82 16 10 Si 0.96 43.43 29.54 68.60 2.03 45.45 16 11 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 12 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 13 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 14 C 0.13 4.45 5.43 85.55 0.46 4.91 16 15 C -0.01 -0.40 6.28 88.46 0.56 0.16 16 16 N -0.29 -9.53 11.13 -50.85 -0.57 -10.10 16 17 N -0.30 -8.82 11.66 -60.75 -0.71 -9.53 16 18 C -0.05 -1.00 12.39 130.60 1.62 0.61 16 19 S 0.24 5.38 23.06 -56.49 -1.30 4.08 16 20 H 0.11 2.99 8.06 -2.91 -0.02 2.97 16 21 H 0.10 3.15 7.84 -2.91 -0.02 3.13 16 22 H 0.09 3.82 6.76 -2.91 -0.02 3.80 16 23 H 0.07 2.57 6.64 -2.39 -0.02 2.56 16 24 H 0.07 3.05 6.79 -2.39 -0.02 3.03 16 25 H 0.01 0.73 7.88 -2.38 -0.02 0.71 16 26 H -0.02 -0.94 6.27 -2.39 -0.01 -0.96 16 27 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 28 H 0.10 3.30 7.84 -2.39 -0.02 3.28 16 29 H 0.06 2.17 6.80 -2.39 -0.02 2.16 16 30 H 0.25 2.55 8.06 -2.91 -0.02 2.52 16 Total: -1.00 -63.98 272.83 1.97 -62.01 By element: Atomic # 1 Polarization: 4.71 SS G_CDS: 1.14 Total: 5.85 kcal Atomic # 6 Polarization: -23.11 SS G_CDS: 5.34 Total: -17.77 kcal Atomic # 7 Polarization: -94.38 SS G_CDS: -5.23 Total: -99.61 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.45 kcal Atomic # 16 Polarization: 5.38 SS G_CDS: -1.30 Total: 4.08 kcal Total: -63.98 1.97 -62.01 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930540738.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.540 kcal (2) G-P(sol) polarization free energy of solvation -63.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.006 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds