Wall clock time and date at job start Sun Mar 29 2020 22:31:32
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.30999 * 1
3 3 C 1.50706 * 119.99849 * 2 1
4 4 N 1.46902 * 109.47232 * 123.97076 * 3 2 1
5 5 C 1.46902 * 110.99618 * 62.69577 * 4 3 2
6 6 C 1.50700 * 109.46921 * 66.05324 * 5 4 3
7 7 H 1.08003 * 119.99804 * 359.97438 * 6 5 4
8 8 C 1.37879 * 119.99967 * 180.02562 * 6 5 4
9 9 N 1.31510 * 120.00177 * 359.97438 * 8 6 5
10 10 Si 1.86800 * 120.00017 * 179.97438 * 8 6 5
11 11 H 1.48505 * 109.46943 * 359.97438 * 10 8 6
12 12 H 1.48501 * 109.47231 * 119.99326 * 10 8 6
13 13 H 1.48496 * 109.47072 * 239.99875 * 10 8 6
14 14 C 1.46904 * 110.99697 * 298.74956 * 4 3 2
15 15 C 1.50696 * 109.46765 * 289.43410 * 14 4 3
16 16 N 1.29414 * 125.69895 * 93.03438 * 15 14 4
17 17 N 1.26394 * 116.47928 * 179.74914 * 16 15 14
18 18 C 1.29414 * 116.47433 * 0.52855 * 17 16 15
19 19 S 1.71216 * 108.60701 * 359.51125 * 18 17 16
20 20 H 1.08001 * 120.00142 * 179.97438 * 1 2 3
21 21 H 1.07998 * 120.00180 * 0.02562 * 1 2 3
22 22 H 1.07997 * 120.00471 * 179.97438 * 2 1 3
23 23 H 1.08995 * 109.46929 * 3.97099 * 3 2 1
24 24 H 1.08996 * 109.46849 * 243.96748 * 3 2 1
25 25 H 1.09005 * 109.47061 * 186.04619 * 5 4 3
26 26 H 1.09000 * 109.47615 * 306.04645 * 5 4 3
27 27 H 0.96994 * 120.00133 * 180.02562 * 9 8 6
28 28 H 1.09002 * 109.46667 * 169.43912 * 14 4 3
29 29 H 1.08993 * 109.47479 * 49.44027 * 14 4 3
30 30 H 1.08006 * 125.69862 * 179.76547 * 18 17 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.3100 0.0000 0.0000
3 6 2.0635 1.3052 0.0000
4 7 2.9785 1.3423 1.1486
5 6 3.9866 0.2781 1.0531
6 6 4.8840 0.5408 -0.1287
7 1 4.7214 1.4111 -0.7473
8 6 5.9119 -0.3304 -0.4209
9 7 6.1096 -1.3904 0.3319
10 14 7.0238 -0.0052 -1.8863
11 1 6.5939 1.2430 -2.5664
12 1 8.4262 0.1422 -1.4206
13 1 6.9349 -1.1423 -2.8372
14 6 2.2383 1.2542 2.4144
15 6 1.4797 2.5361 2.6430
16 7 0.2537 2.7605 2.2946
17 7 -0.2128 3.9006 2.5773
18 6 0.5906 4.7209 3.1745
19 16 2.0962 3.9394 3.4061
20 1 -0.5400 -0.9353 -0.0004
21 1 -0.5400 0.9353 -0.0004
22 1 1.8500 -0.9352 0.0004
23 1 1.3573 2.1323 0.0712
24 1 2.6357 1.3943 -0.9234
25 1 4.5832 0.2598 1.9653
26 1 3.4892 -0.6833 0.9251
27 1 6.8330 -2.0031 0.1266
28 1 2.9386 1.0953 3.2345
29 1 1.5376 0.4206 2.3683
30 1 0.3500 5.7286 3.4797
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000930540738.mol2 30
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 22:31:32
Heat of formation + Delta-G solvation = 73.533158 kcal
Electronic energy + Delta-G solvation = -14756.552244 eV
Core-core repulsion = 12293.324967 eV
Total energy + Delta-G solvation = -2463.227277 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 239.079 amu
Computer time = 0.21 seconds
Orbital eigenvalues (eV)
-42.21036 -39.13850 -34.92264 -34.12517 -32.70576 -29.83256 -28.43815 -26.93560
-25.19189 -22.91698 -21.54066 -20.55083 -19.87349 -18.40636 -17.15180 -16.93003
-16.73466 -16.24804 -15.81505 -15.29078 -14.84187 -14.31163 -14.04601 -13.98099
-13.26940 -13.07901 -12.69962 -12.61337 -12.33126 -12.22288 -11.89947 -11.45915
-11.26404 -11.21859 -10.89827 -10.60401 -10.58960 -10.24437 -9.12408 -8.18539
-6.26520 -0.45409 0.09225 0.52694 1.38457 1.41964 1.43715 1.55632
1.61048 2.42000 3.04299 3.15513 3.47180 3.91048 3.93563 4.10165
4.25248 4.47036 4.52873 4.61391 4.64071 4.94716 5.04345 5.21232
5.31347 5.63313 5.74266 5.81800 6.06127 6.21718 6.51636 6.87515
7.42179 7.60957 8.92451
Molecular weight = 239.08amu
Principal moments of inertia in cm(-1)
A = 0.030448 B = 0.006741 C = 0.006050
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 919.372738 B = 4152.554934 C = 4626.822390
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.164 4.164
2 C -0.193 4.193
3 C 0.097 3.903
4 N -0.527 5.527
5 C 0.207 3.793
6 C -0.518 4.518
7 H 0.060 0.940
8 C 0.007 3.993
9 N -0.931 5.931
10 Si 0.962 3.038
11 H -0.266 1.266
12 H -0.278 1.278
13 H -0.282 1.282
14 C 0.127 3.873
15 C -0.013 4.013
16 N -0.287 5.287
17 N -0.299 5.299
18 C -0.049 4.049
19 S 0.240 5.760
20 H 0.107 0.893
21 H 0.099 0.901
22 H 0.091 0.909
23 H 0.067 0.933
24 H 0.070 0.930
25 H 0.014 0.986
26 H -0.018 1.018
27 H 0.264 0.736
28 H 0.102 0.898
29 H 0.060 0.940
30 H 0.253 0.747
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.978 10.031 6.178 14.228
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.202 4.202
2 C -0.213 4.213
3 C -0.031 4.031
4 N -0.251 5.251
5 C 0.081 3.919
6 C -0.556 4.556
7 H 0.078 0.922
8 C -0.191 4.191
9 N -0.572 5.572
10 Si 0.787 3.213
11 H -0.191 1.191
12 H -0.204 1.204
13 H -0.207 1.207
14 C -0.004 4.004
15 C -0.292 4.292
16 N -0.127 5.127
17 N -0.135 5.135
18 C -0.347 4.347
19 S 0.481 5.519
20 H 0.125 0.875
21 H 0.117 0.883
22 H 0.109 0.891
23 H 0.085 0.915
24 H 0.088 0.912
25 H 0.032 0.968
26 H 0.000 1.000
27 H 0.073 0.927
28 H 0.120 0.880
29 H 0.078 0.922
30 H 0.269 0.731
Dipole moment (debyes) X Y Z Total
from point charges -7.941 10.283 6.063 14.337
hybrid contribution 0.219 -1.068 -0.737 1.316
sum -7.722 9.216 5.326 13.150
Atomic orbital electron populations
1.23867 0.95004 1.02157 0.99182 1.23476 0.96867 0.99507 1.01408
1.21116 0.93513 0.93926 0.94529 1.62328 1.13505 1.49013 1.00257
1.19461 0.88700 0.87190 0.96530 1.21417 1.13386 1.08706 1.12139
0.92202 1.25762 0.99016 0.94786 0.99529 1.70059 1.32468 1.14158
1.40470 0.85442 0.78538 0.78185 0.79109 1.19052 1.20371 1.20745
1.20491 0.95620 0.89574 0.94760 1.29148 0.94920 1.03575 1.01576
1.71441 1.10122 1.12287 1.18805 1.71390 1.30502 0.97660 1.13976
1.31070 0.93720 1.07763 1.02185 1.83608 1.14203 1.04070 1.50019
0.87470 0.88301 0.89141 0.91482 0.91207 0.96814 0.99981 0.92728
0.88030 0.92170 0.73116
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -5.28 14.32 67.78 0.97 -4.31 16
2 C -0.19 -7.29 7.47 25.65 0.19 -7.10 16
3 C 0.10 3.88 5.47 85.56 0.47 4.35 16
4 N -0.53 -21.93 4.66 -909.93 -4.24 -26.17 16
5 C 0.21 10.36 4.55 85.56 0.39 10.75 16
6 C -0.52 -28.23 8.48 25.60 0.22 -28.01 16
7 H 0.06 3.25 7.12 -2.91 -0.02 3.23 16
8 C 0.01 0.41 5.46 84.66 0.46 0.87 16
9 N -0.93 -54.10 13.29 21.45 0.28 -53.82 16
10 Si 0.96 43.43 29.54 68.60 2.03 45.45 16
11 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16
12 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16
13 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16
14 C 0.13 4.45 5.43 85.55 0.46 4.91 16
15 C -0.01 -0.40 6.28 88.46 0.56 0.16 16
16 N -0.29 -9.53 11.13 -50.85 -0.57 -10.10 16
17 N -0.30 -8.82 11.66 -60.75 -0.71 -9.53 16
18 C -0.05 -1.00 12.39 130.60 1.62 0.61 16
19 S 0.24 5.38 23.06 -56.49 -1.30 4.08 16
20 H 0.11 2.99 8.06 -2.91 -0.02 2.97 16
21 H 0.10 3.15 7.84 -2.91 -0.02 3.13 16
22 H 0.09 3.82 6.76 -2.91 -0.02 3.80 16
23 H 0.07 2.57 6.64 -2.39 -0.02 2.56 16
24 H 0.07 3.05 6.79 -2.39 -0.02 3.03 16
25 H 0.01 0.73 7.88 -2.38 -0.02 0.71 16
26 H -0.02 -0.94 6.27 -2.39 -0.01 -0.96 16
27 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16
28 H 0.10 3.30 7.84 -2.39 -0.02 3.28 16
29 H 0.06 2.17 6.80 -2.39 -0.02 2.16 16
30 H 0.25 2.55 8.06 -2.91 -0.02 2.52 16
Total: -1.00 -63.98 272.83 1.97 -62.01
By element:
Atomic # 1 Polarization: 4.71 SS G_CDS: 1.14 Total: 5.85 kcal
Atomic # 6 Polarization: -23.11 SS G_CDS: 5.34 Total: -17.77 kcal
Atomic # 7 Polarization: -94.38 SS G_CDS: -5.23 Total: -99.61 kcal
Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.45 kcal
Atomic # 16 Polarization: 5.38 SS G_CDS: -1.30 Total: 4.08 kcal
Total: -63.98 1.97 -62.01 kcal
The number of atoms in the molecule is 30
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000930540738.mol2 30
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 135.540 kcal
(2) G-P(sol) polarization free energy of solvation -63.978 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.562 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.971 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.006 kcal
(6) G-S(sol) free energy of system = (1) + (5) 73.533 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.21 seconds