Wall clock time and date at job start Sun Mar 29 2020 22:24:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 119.99870 * 2 1 4 4 H 1.48506 * 109.47014 * 239.99730 * 3 2 1 5 5 H 1.48503 * 109.47043 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47160 * 119.99993 * 3 2 1 7 7 C 1.37877 * 120.00506 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00411 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99669 * 0.02562 * 7 2 1 10 10 C 1.53935 * 113.73364 * 81.23515 * 9 7 2 11 11 N 1.48296 * 86.06285 * 138.12975 * 10 9 7 12 12 C 1.46902 * 111.00409 * 222.41947 * 11 10 9 13 13 C 1.50702 * 109.47267 * 289.35248 * 12 11 10 14 14 C 1.33322 * 125.95369 * 90.00111 * 13 12 11 15 15 N 1.32120 * 114.57885 * 180.02562 * 14 13 12 16 16 C 1.29688 * 116.86826 * 0.02562 * 15 14 13 17 17 N 1.38610 * 124.94813 * 180.02562 * 16 15 14 18 18 S 1.70964 * 110.10123 * 359.72506 * 16 15 14 19 19 C 1.47961 * 90.75572 * 335.31010 * 11 10 9 20 20 H 0.96995 * 120.00309 * 0.02562 * 1 2 3 21 21 H 1.09002 * 112.93816 * 309.66794 * 9 7 2 22 22 H 1.09001 * 113.76001 * 252.50560 * 10 9 7 23 23 H 1.09000 * 113.75996 * 23.86376 * 10 9 7 24 24 H 1.08997 * 109.47246 * 49.35399 * 12 11 10 25 25 H 1.09007 * 109.46957 * 169.35176 * 12 11 10 26 26 H 1.07995 * 122.70845 * 359.97438 * 14 13 12 27 27 H 0.97007 * 120.00272 * 359.97438 * 17 16 15 28 28 H 0.97001 * 119.99694 * 179.97438 * 17 16 15 29 29 H 1.09007 * 113.75652 * 270.36911 * 19 11 10 30 30 H 1.08992 * 113.86038 * 139.01836 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 0.7559 -2.9287 -1.3923 11 7 1.1880 -4.2953 -1.0119 12 6 1.8749 -4.9600 -2.1275 13 6 0.8758 -5.2942 -3.2050 14 6 0.5343 -4.5089 -4.2268 15 7 -0.3676 -5.0275 -5.0411 16 6 -0.8036 -6.2145 -4.7532 17 7 -1.7462 -6.9145 -5.4899 18 16 -0.0403 -6.7933 -3.3372 19 6 2.1611 -3.7399 -0.0455 20 1 -0.4850 0.8400 -0.0004 21 1 0.4835 -2.5465 0.7729 22 1 -0.3212 -2.8279 -1.5258 23 1 1.3294 -2.4995 -2.2139 24 1 2.6375 -4.2949 -2.5327 25 1 2.3447 -5.8766 -1.7705 26 1 0.9601 -3.5277 -4.3763 27 1 -2.1310 -6.5178 -6.2871 28 1 -2.0210 -7.8011 -5.2083 29 1 3.1447 -3.5475 -0.4741 30 1 2.2073 -4.2858 0.8967 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001139225385.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:24:26 Heat of formation + Delta-G solvation = 80.327308 kcal Electronic energy + Delta-G solvation = -14498.496942 eV Core-core repulsion = 12035.564281 eV Total energy + Delta-G solvation = -2462.932661 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.079 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.51952 -38.46861 -34.71709 -32.77378 -31.11044 -27.69347 -25.50893 -24.81902 -23.91668 -21.99713 -19.84814 -18.72995 -18.30410 -16.66273 -15.94444 -15.85586 -14.98344 -14.56448 -14.37765 -14.16349 -13.83686 -13.48862 -12.40650 -11.94992 -11.70164 -11.26447 -11.12053 -10.91212 -10.79942 -10.63274 -10.31765 -9.74372 -9.38775 -9.27124 -9.00175 -8.88164 -8.42718 -7.91185 -7.63008 -6.02726 -4.07716 1.21412 1.32785 2.00685 3.21480 3.31565 3.36971 3.38761 3.49271 4.42111 4.97375 5.08617 5.25116 5.34663 5.56204 5.91178 6.07507 6.16898 6.36395 6.39492 6.52565 6.66423 6.79598 6.90098 7.19702 7.20939 7.25077 7.74406 7.92526 8.08157 8.16232 8.38474 8.94515 9.57236 11.06632 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.041383 B = 0.005590 C = 0.005234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.449340 B = 5007.666011 C = 5348.114212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.067 3.933 3 Si 0.890 3.110 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.520 4.520 8 H 0.057 0.943 9 C 0.039 3.961 10 C 0.020 3.980 11 N -0.488 5.488 12 C 0.102 3.898 13 C -0.225 4.225 14 C 0.078 3.922 15 N -0.547 5.547 16 C 0.300 3.700 17 N -0.826 5.826 18 S 0.100 5.900 19 C -0.002 4.002 20 H 0.262 0.738 21 H 0.058 0.942 22 H 0.065 0.935 23 H 0.054 0.946 24 H 0.056 0.944 25 H 0.073 0.927 26 H 0.172 0.828 27 H 0.408 0.592 28 H 0.411 0.589 29 H 0.056 0.944 30 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.513 -13.487 -8.195 15.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.136 4.136 3 Si 0.718 3.282 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.558 4.558 8 H 0.075 0.925 9 C 0.020 3.980 10 C -0.109 4.109 11 N -0.212 5.212 12 C -0.028 4.028 13 C -0.348 4.348 14 C -0.072 4.072 15 N -0.272 5.272 16 C -0.073 4.073 17 N -0.379 5.379 18 S 0.346 5.654 19 C -0.131 4.131 20 H 0.072 0.928 21 H 0.076 0.924 22 H 0.084 0.916 23 H 0.072 0.928 24 H 0.074 0.926 25 H 0.091 0.909 26 H 0.189 0.811 27 H 0.239 0.761 28 H 0.241 0.759 29 H 0.074 0.926 30 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.402 -14.487 -7.885 16.553 hybrid contribution 1.029 2.115 -0.840 2.498 sum -0.374 -12.371 -8.725 15.143 Atomic orbital electron populations 1.69955 1.05981 1.26828 1.49546 1.25003 0.94791 0.99081 0.94685 0.86698 0.79660 0.83224 0.78649 1.20251 1.21269 1.20180 1.21047 0.92711 0.90370 1.51658 0.92501 1.20309 0.93695 0.90974 0.93069 1.24053 0.99980 0.85985 1.00885 1.68722 1.25926 1.17605 1.08898 1.20873 0.92255 0.99661 0.90052 1.25237 1.08769 0.96734 1.04014 1.21307 0.94759 1.00493 0.90618 1.66391 1.17734 1.09675 1.33431 1.23510 0.95781 0.92871 0.95143 1.41417 1.45250 1.20099 1.31091 1.83759 1.38817 1.19888 1.22908 1.24090 0.95304 0.98017 0.95670 0.92826 0.92380 0.91632 0.92778 0.92576 0.90874 0.81089 0.76067 0.75881 0.92565 0.91526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.70 13.29 55.43 0.74 -24.96 16 2 C 0.07 1.86 5.46 -17.82 -0.10 1.76 16 3 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.52 -14.09 8.77 -34.44 -0.30 -14.39 16 8 H 0.06 1.50 7.81 -52.49 -0.41 1.09 16 9 C 0.04 0.97 3.60 -90.84 -0.33 0.64 16 10 C 0.02 0.45 6.74 -2.57 -0.02 0.44 16 11 N -0.49 -9.93 6.26 -239.49 -1.50 -11.43 16 12 C 0.10 1.75 5.35 -4.97 -0.03 1.72 16 13 C -0.22 -3.72 5.74 -36.02 -0.21 -3.93 16 14 C 0.08 1.33 10.85 -19.14 -0.21 1.12 16 15 N -0.55 -9.16 10.60 -15.21 -0.16 -9.32 16 16 C 0.30 4.20 8.58 -87.68 -0.75 3.45 16 17 N -0.83 -7.83 9.08 29.77 0.27 -7.56 16 18 S 0.10 1.38 23.22 -107.50 -2.50 -1.12 16 19 C 0.00 -0.05 7.53 -2.76 -0.02 -0.07 16 20 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 21 H 0.06 1.60 8.14 -51.93 -0.42 1.18 16 22 H 0.07 1.63 8.14 -51.93 -0.42 1.21 16 23 H 0.05 1.25 7.74 -51.93 -0.40 0.85 16 24 H 0.06 0.95 7.69 -51.93 -0.40 0.55 16 25 H 0.07 1.13 8.14 -51.92 -0.42 0.71 16 26 H 0.17 2.84 8.06 -52.49 -0.42 2.41 16 27 H 0.41 3.36 8.95 -40.82 -0.37 3.00 16 28 H 0.41 2.66 8.95 -40.82 -0.37 2.30 16 29 H 0.06 1.12 7.74 -51.92 -0.40 0.72 16 30 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 LS Contribution 273.74 15.07 4.13 4.13 Total: -1.00 -30.55 273.74 -9.59 -40.14 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: -3.59 Total: 3.31 kcal Atomic # 6 Polarization: -7.30 SS G_CDS: -1.96 Total: -9.26 kcal Atomic # 7 Polarization: -52.62 SS G_CDS: -0.65 Total: -53.27 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Atomic # 16 Polarization: 1.38 SS G_CDS: -2.50 Total: -1.12 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -30.55 -9.59 -40.14 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139225385.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.467 kcal (2) G-P(sol) polarization free energy of solvation -30.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.140 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds