Wall clock time and date at job start Sun Mar 29 2020 22:24:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 119.99870 * 2 1 4 4 H 1.48506 * 109.47014 * 239.99730 * 3 2 1 5 5 H 1.48503 * 109.47043 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47160 * 119.99993 * 3 2 1 7 7 C 1.37877 * 120.00506 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00411 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99669 * 0.02562 * 7 2 1 10 10 C 1.53935 * 113.73364 * 81.23515 * 9 7 2 11 11 N 1.48296 * 86.06285 * 138.12975 * 10 9 7 12 12 C 1.46902 * 111.00409 * 222.41947 * 11 10 9 13 13 C 1.50702 * 109.47267 * 289.35248 * 12 11 10 14 14 C 1.33322 * 125.95369 * 90.00111 * 13 12 11 15 15 N 1.32120 * 114.57885 * 180.02562 * 14 13 12 16 16 C 1.29688 * 116.86826 * 0.02562 * 15 14 13 17 17 N 1.38610 * 124.94813 * 180.02562 * 16 15 14 18 18 S 1.70964 * 110.10123 * 359.72506 * 16 15 14 19 19 C 1.47961 * 90.75572 * 335.31010 * 11 10 9 20 20 H 0.96995 * 120.00309 * 0.02562 * 1 2 3 21 21 H 1.09002 * 112.93816 * 309.66794 * 9 7 2 22 22 H 1.09001 * 113.76001 * 252.50560 * 10 9 7 23 23 H 1.09000 * 113.75996 * 23.86376 * 10 9 7 24 24 H 1.08997 * 109.47246 * 49.35399 * 12 11 10 25 25 H 1.09007 * 109.46957 * 169.35176 * 12 11 10 26 26 H 1.07995 * 122.70845 * 359.97438 * 14 13 12 27 27 H 0.97007 * 120.00272 * 359.97438 * 17 16 15 28 28 H 0.97001 * 119.99694 * 179.97438 * 17 16 15 29 29 H 1.09007 * 113.75652 * 270.36911 * 19 11 10 30 30 H 1.08992 * 113.86038 * 139.01836 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 0.7559 -2.9287 -1.3923 11 7 1.1880 -4.2953 -1.0119 12 6 1.8749 -4.9600 -2.1275 13 6 0.8758 -5.2942 -3.2050 14 6 0.5343 -4.5089 -4.2268 15 7 -0.3676 -5.0275 -5.0411 16 6 -0.8036 -6.2145 -4.7532 17 7 -1.7462 -6.9145 -5.4899 18 16 -0.0403 -6.7933 -3.3372 19 6 2.1611 -3.7399 -0.0455 20 1 -0.4850 0.8400 -0.0004 21 1 0.4835 -2.5465 0.7729 22 1 -0.3212 -2.8279 -1.5258 23 1 1.3294 -2.4995 -2.2139 24 1 2.6375 -4.2949 -2.5327 25 1 2.3447 -5.8766 -1.7705 26 1 0.9601 -3.5277 -4.3763 27 1 -2.1310 -6.5178 -6.2871 28 1 -2.0210 -7.8011 -5.2083 29 1 3.1447 -3.5475 -0.4741 30 1 2.2073 -4.2858 0.8967 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001139225385.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:24:25 Heat of formation + Delta-G solvation = 57.389854 kcal Electronic energy + Delta-G solvation = -14499.491584 eV Core-core repulsion = 12035.564281 eV Total energy + Delta-G solvation = -2463.927303 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.079 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.85537 -40.02988 -35.78168 -34.71447 -32.60898 -29.32250 -27.19895 -26.54375 -25.27519 -23.56937 -21.04794 -20.42549 -19.54063 -18.61408 -17.14121 -16.92278 -16.71142 -16.22646 -15.88489 -15.56471 -15.34726 -14.91889 -13.87076 -13.86277 -13.34987 -13.06280 -12.81381 -12.59904 -12.35431 -12.06009 -11.85953 -11.55022 -11.11811 -10.90293 -10.56377 -10.50472 -10.06363 -9.58872 -8.75353 -8.12626 -6.24360 0.04269 0.22008 0.82576 1.44222 1.45354 1.53153 1.99091 2.44116 2.56468 3.17258 3.34760 3.91321 4.01216 4.23107 4.34586 4.53985 4.64884 4.73637 4.87810 4.90822 5.01620 5.16815 5.26758 5.52979 5.65300 5.87345 6.02161 6.31725 6.37544 6.38951 6.84892 7.11354 7.44320 8.96628 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.041383 B = 0.005590 C = 0.005234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.449340 B = 5007.666011 C = 5348.114212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.015 3.985 3 Si 0.956 3.044 4 H -0.269 1.269 5 H -0.287 1.287 6 H -0.268 1.268 7 C -0.531 4.531 8 H 0.062 0.938 9 C 0.018 3.982 10 C 0.036 3.964 11 N -0.487 5.487 12 C 0.106 3.894 13 C -0.254 4.254 14 C 0.071 3.929 15 N -0.582 5.582 16 C 0.300 3.700 17 N -0.803 5.803 18 S 0.143 5.857 19 C 0.015 3.985 20 H 0.261 0.739 21 H 0.023 0.977 22 H 0.038 0.962 23 H 0.050 0.950 24 H 0.058 0.942 25 H 0.096 0.904 26 H 0.164 0.836 27 H 0.417 0.583 28 H 0.427 0.573 29 H 0.069 0.931 30 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.227 -14.756 -8.772 17.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.185 4.185 3 Si 0.781 3.219 4 H -0.194 1.194 5 H -0.213 1.213 6 H -0.193 1.193 7 C -0.570 4.570 8 H 0.080 0.920 9 C -0.002 4.002 10 C -0.093 4.093 11 N -0.210 5.210 12 C -0.025 4.025 13 C -0.378 4.378 14 C -0.080 4.080 15 N -0.309 5.309 16 C -0.074 4.074 17 N -0.358 5.358 18 S 0.390 5.610 19 C -0.114 4.114 20 H 0.070 0.930 21 H 0.041 0.959 22 H 0.056 0.944 23 H 0.069 0.931 24 H 0.076 0.924 25 H 0.114 0.886 26 H 0.181 0.819 27 H 0.250 0.750 28 H 0.261 0.739 29 H 0.087 0.913 30 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -0.675 -15.812 -8.473 17.952 hybrid contribution 0.718 2.387 -0.707 2.591 sum 0.044 -13.425 -9.181 16.264 Atomic orbital electron populations 1.70095 1.07606 1.27542 1.50959 1.25820 0.95532 1.02680 0.94438 0.85646 0.78358 0.78810 0.79061 1.19409 1.21306 1.19265 1.21419 0.93112 0.91457 1.50968 0.92012 1.20313 0.94196 0.92498 0.93148 1.23685 0.98102 0.87985 0.99542 1.68629 1.26513 1.15812 1.10083 1.20865 0.92288 1.00181 0.89118 1.25228 1.09916 0.98596 1.04037 1.21317 0.95013 1.00506 0.91123 1.66401 1.18897 1.11169 1.34399 1.23835 0.95667 0.92434 0.95425 1.41491 1.43362 1.20385 1.30532 1.83491 1.37778 1.17605 1.22099 1.23951 0.95030 0.95700 0.96689 0.92978 0.95922 0.94366 0.93138 0.92413 0.88595 0.81899 0.75041 0.73910 0.91306 0.89908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.87 13.29 21.45 0.28 -54.59 16 2 C 0.01 0.81 5.46 84.66 0.46 1.27 16 3 Si 0.96 43.38 29.54 68.60 2.03 45.40 16 4 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 5 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 6 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 7 C -0.53 -28.98 8.77 25.60 0.22 -28.76 16 8 H 0.06 3.23 7.81 -2.91 -0.02 3.21 16 9 C 0.02 0.90 3.60 -10.89 -0.04 0.86 16 10 C 0.04 1.70 6.74 86.34 0.58 2.28 16 11 N -0.49 -19.49 6.26 -911.60 -5.71 -25.19 16 12 C 0.11 3.45 5.35 85.56 0.46 3.91 16 13 C -0.25 -8.16 5.74 24.57 0.14 -8.02 16 14 C 0.07 2.41 10.85 83.54 0.91 3.31 16 15 N -0.58 -19.05 10.60 -202.03 -2.14 -21.19 16 16 C 0.30 7.84 8.58 179.32 1.54 9.38 16 17 N -0.80 -13.15 9.08 -59.73 -0.54 -13.69 16 18 S 0.14 3.66 23.22 -56.49 -1.31 2.35 16 19 C 0.01 0.60 7.53 86.41 0.65 1.25 16 20 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 21 H 0.02 1.30 8.14 -2.39 -0.02 1.28 16 22 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 23 H 0.05 2.39 7.74 -2.39 -0.02 2.37 16 24 H 0.06 1.87 7.69 -2.39 -0.02 1.85 16 25 H 0.10 2.70 8.14 -2.38 -0.02 2.68 16 26 H 0.16 5.57 8.06 -2.91 -0.02 5.55 16 27 H 0.42 5.83 8.95 -92.70 -0.83 5.00 16 28 H 0.43 4.19 8.95 -92.71 -0.83 3.36 16 29 H 0.07 2.62 7.74 -2.38 -0.02 2.60 16 30 H 0.08 3.08 8.14 -2.39 -0.02 3.06 16 Total: -1.00 -65.82 273.74 -2.96 -68.78 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: -0.49 Total: 12.65 kcal Atomic # 6 Polarization: -19.44 SS G_CDS: 4.92 Total: -14.51 kcal Atomic # 7 Polarization: -106.56 SS G_CDS: -8.10 Total: -114.66 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.40 kcal Atomic # 16 Polarization: 3.66 SS G_CDS: -1.31 Total: 2.35 kcal Total: -65.82 -2.96 -68.78 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139225385.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.165 kcal (2) G-P(sol) polarization free energy of solvation -65.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.775 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds