Wall clock time and date at job start Sun Mar 29 2020 21:57:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86805 * 119.99534 * 2 1 4 4 H 1.48506 * 109.47080 * 269.99570 * 3 2 1 5 5 H 1.48496 * 109.47470 * 29.99995 * 3 2 1 6 6 H 1.48499 * 109.46866 * 150.00024 * 3 2 1 7 7 C 1.37873 * 120.00299 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99725 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99752 * 359.97438 * 7 2 1 10 10 C 1.50705 * 109.46815 * 180.02562 * 9 7 2 11 11 O 1.21299 * 120.00397 * 0.02562 * 10 9 7 12 12 N 1.34777 * 119.99917 * 180.02562 * 10 9 7 13 13 C 1.40388 * 119.99961 * 175.27609 * 12 10 9 14 14 C 1.39516 * 120.90078 * 252.98494 * 13 12 10 15 15 O 1.35621 * 120.50999 * 0.02585 * 14 13 12 16 16 N 1.32884 * 118.98376 * 179.79097 * 14 13 12 17 17 C 1.31782 * 120.91550 * 0.47416 * 16 14 13 18 18 N 1.31773 * 122.00371 * 359.77770 * 17 16 14 19 19 C 1.32886 * 120.92039 * 359.97438 * 18 17 16 20 20 O 1.35628 * 120.51198 * 180.02562 * 19 18 17 21 21 H 0.97002 * 120.00415 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.47369 * 60.00770 * 9 7 2 23 23 H 1.09000 * 109.47454 * 300.00236 * 9 7 2 24 24 H 0.97010 * 120.00117 * 355.55003 * 12 10 9 25 25 H 0.96702 * 114.00146 * 89.49709 * 15 14 13 26 26 H 1.07999 * 119.00158 * 179.75229 * 17 16 14 27 27 H 0.96698 * 113.99961 * 269.97463 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4990 0.0017 10 6 2.2305 -3.6445 0.0027 11 8 3.4231 -3.4228 0.0030 12 7 1.7813 -4.9152 0.0033 13 6 2.6898 -5.9809 -0.0958 14 6 2.7993 -6.7219 -1.2729 15 8 2.0274 -6.4250 -2.3477 16 7 3.6749 -7.7200 -1.3263 17 6 4.4256 -8.0185 -0.2852 18 7 4.3496 -7.3471 0.8461 19 6 3.5036 -6.3314 0.9818 20 8 3.4325 -5.6457 2.1499 21 1 -0.4851 0.8400 -0.0004 22 1 0.6242 -2.5575 -0.8881 23 1 0.6248 -2.5562 0.8919 24 1 0.8300 -5.0933 0.0683 25 1 2.4211 -5.7769 -2.9478 26 1 5.1243 -8.8386 -0.3613 27 1 2.7896 -6.0034 2.7774 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143189712.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:57:17 Heat of formation + Delta-G solvation = -61.891688 kcal Electronic energy + Delta-G solvation = -16638.500680 eV Core-core repulsion = 13590.814975 eV Total energy + Delta-G solvation = -3047.685705 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.074 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.45144 -38.77764 -38.15622 -37.02570 -34.36337 -33.02141 -32.65236 -30.17851 -28.54509 -24.70494 -23.99875 -23.13558 -20.09662 -19.73386 -18.54844 -17.87913 -17.40212 -16.43999 -15.92775 -15.79314 -15.23832 -14.49578 -14.48002 -14.04988 -13.49328 -13.06542 -12.76400 -12.18397 -11.74223 -11.36599 -11.02995 -10.81933 -10.72529 -10.42910 -10.05640 -10.04285 -9.59638 -9.36971 -8.91692 -8.56056 -8.48224 -6.13380 -4.13701 0.63750 0.73906 3.11344 3.23757 3.30745 3.36330 3.38449 3.41046 3.50590 3.68548 4.16008 4.42624 4.88213 5.00387 5.23952 5.26755 5.86561 6.07577 6.45737 6.91249 7.04884 7.19517 7.22160 7.38455 7.76574 7.88240 7.89954 8.23354 8.96135 8.99072 9.51906 10.98717 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.040056 B = 0.006079 C = 0.005742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.857301 B = 4604.747862 C = 4875.251658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.057 3.943 3 Si 0.902 3.098 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.511 4.511 8 H 0.075 0.925 9 C 0.011 3.989 10 C 0.519 3.481 11 O -0.524 6.524 12 N -0.689 5.689 13 C 0.023 3.977 14 C 0.367 3.633 15 O -0.470 6.470 16 N -0.540 5.540 17 C 0.332 3.668 18 N -0.541 5.541 19 C 0.381 3.619 20 O -0.457 6.457 21 H 0.263 0.737 22 H 0.052 0.948 23 H 0.051 0.949 24 H 0.410 0.590 25 H 0.413 0.587 26 H 0.208 0.792 27 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.080 -14.650 -0.133 14.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.145 4.145 3 Si 0.730 3.270 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.196 1.196 7 C -0.550 4.550 8 H 0.093 0.907 9 C -0.028 4.028 10 C 0.311 3.689 11 O -0.397 6.397 12 N -0.344 5.344 13 C -0.078 4.078 14 C 0.178 3.822 15 O -0.278 6.278 16 N -0.267 5.267 17 C 0.044 3.956 18 N -0.267 5.267 19 C 0.193 3.807 20 O -0.264 6.264 21 H 0.072 0.928 22 H 0.070 0.930 23 H 0.069 0.931 24 H 0.248 0.752 25 H 0.273 0.727 26 H 0.224 0.776 27 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges 3.370 -14.943 -0.199 15.320 hybrid contribution -0.724 1.500 0.074 1.667 sum 2.646 -13.443 -0.124 13.701 Atomic orbital electron populations 1.69949 1.06033 1.27092 1.50807 1.24993 0.94921 0.99518 0.95020 0.86413 0.79885 0.82510 0.78217 1.20569 1.21180 1.19624 1.21131 0.94243 0.88954 1.50648 0.90685 1.19245 0.93882 0.89816 0.99844 1.22398 0.91461 0.82464 0.72616 1.90595 1.18048 1.83889 1.47123 1.43892 1.08717 1.03711 1.78093 1.19724 0.98561 0.94433 0.95039 1.19695 0.86463 0.89227 0.86781 1.84639 1.42383 1.65371 1.35418 1.67995 1.07089 1.18506 1.33117 1.24559 0.93595 0.95896 0.81543 1.67995 1.22247 1.07977 1.28518 1.19709 0.88255 0.85614 0.87123 1.84854 1.64534 1.51770 1.25209 0.92778 0.93018 0.93086 0.75238 0.72652 0.77615 0.73590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.67 13.29 55.43 0.74 -24.94 15 2 C 0.06 1.58 5.46 -17.82 -0.10 1.49 15 3 Si 0.90 21.78 29.54 -169.99 -5.02 16.76 15 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 15 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 15 6 H -0.27 -6.59 7.11 56.52 0.40 -6.19 15 7 C -0.51 -14.43 8.92 -34.44 -0.31 -14.74 15 8 H 0.08 2.23 6.75 -52.48 -0.35 1.88 15 9 C 0.01 0.28 5.46 -29.04 -0.16 0.12 15 10 C 0.52 11.25 7.63 -10.98 -0.08 11.17 15 11 O -0.52 -13.41 15.27 5.54 0.08 -13.33 15 12 N -0.69 -11.28 4.93 -9.44 -0.05 -11.33 15 13 C 0.02 0.36 5.50 -82.98 -0.46 -0.09 15 14 C 0.37 5.35 7.85 -16.62 -0.13 5.22 15 15 O -0.47 -6.11 13.37 -18.56 -0.25 -6.36 15 16 N -0.54 -7.41 10.45 -14.57 -0.15 -7.57 15 17 C 0.33 4.03 12.28 -92.18 -1.13 2.90 15 18 N -0.54 -7.76 10.45 -14.57 -0.15 -7.91 15 19 C 0.38 5.98 7.60 -16.62 -0.13 5.85 15 20 O -0.46 -7.00 13.25 -18.58 -0.25 -7.24 15 21 H 0.26 7.11 8.31 -40.82 -0.34 6.77 15 22 H 0.05 1.25 8.14 -51.93 -0.42 0.83 15 23 H 0.05 1.24 8.14 -51.93 -0.42 0.81 15 24 H 0.41 5.55 8.83 -40.82 -0.36 5.19 15 25 H 0.41 4.02 9.06 45.56 0.41 4.43 15 26 H 0.21 1.57 8.06 -52.49 -0.42 1.14 15 27 H 0.40 3.75 9.06 45.56 0.41 4.16 15 LS Contribution 258.92 15.07 3.90 3.90 Total: -1.00 -35.74 258.92 -3.93 -39.66 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: -0.29 Total: 6.42 kcal Atomic # 6 Polarization: 14.41 SS G_CDS: -2.49 Total: 11.92 kcal Atomic # 7 Polarization: -52.13 SS G_CDS: 0.39 Total: -51.75 kcal Atomic # 8 Polarization: -26.52 SS G_CDS: -0.41 Total: -26.93 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -35.74 -3.93 -39.66 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143189712.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.227 kcal (2) G-P(sol) polarization free energy of solvation -35.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds