Wall clock time and date at job start Sun Mar 29 2020 21:57:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86805 * 119.99534 * 2 1 4 4 H 1.48506 * 109.47080 * 269.99570 * 3 2 1 5 5 H 1.48496 * 109.47470 * 29.99995 * 3 2 1 6 6 H 1.48499 * 109.46866 * 150.00024 * 3 2 1 7 7 C 1.37873 * 120.00299 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99725 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99752 * 359.97438 * 7 2 1 10 10 C 1.50705 * 109.46815 * 180.02562 * 9 7 2 11 11 O 1.21299 * 120.00397 * 0.02562 * 10 9 7 12 12 N 1.34777 * 119.99917 * 180.02562 * 10 9 7 13 13 C 1.40388 * 119.99961 * 175.27609 * 12 10 9 14 14 C 1.39516 * 120.90078 * 252.98494 * 13 12 10 15 15 O 1.35621 * 120.50999 * 0.02585 * 14 13 12 16 16 N 1.32884 * 118.98376 * 179.79097 * 14 13 12 17 17 C 1.31782 * 120.91550 * 0.47416 * 16 14 13 18 18 N 1.31773 * 122.00371 * 359.77770 * 17 16 14 19 19 C 1.32886 * 120.92039 * 359.97438 * 18 17 16 20 20 O 1.35628 * 120.51198 * 180.02562 * 19 18 17 21 21 H 0.97002 * 120.00415 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.47369 * 60.00770 * 9 7 2 23 23 H 1.09000 * 109.47454 * 300.00236 * 9 7 2 24 24 H 0.97010 * 120.00117 * 355.55003 * 12 10 9 25 25 H 0.96702 * 114.00146 * 89.49709 * 15 14 13 26 26 H 1.07999 * 119.00158 * 179.75229 * 17 16 14 27 27 H 0.96698 * 113.99961 * 269.97463 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4990 0.0017 10 6 2.2305 -3.6445 0.0027 11 8 3.4231 -3.4228 0.0030 12 7 1.7813 -4.9152 0.0033 13 6 2.6898 -5.9809 -0.0958 14 6 2.7993 -6.7219 -1.2729 15 8 2.0274 -6.4250 -2.3477 16 7 3.6749 -7.7200 -1.3263 17 6 4.4256 -8.0185 -0.2852 18 7 4.3496 -7.3471 0.8461 19 6 3.5036 -6.3314 0.9818 20 8 3.4325 -5.6457 2.1499 21 1 -0.4851 0.8400 -0.0004 22 1 0.6242 -2.5575 -0.8881 23 1 0.6248 -2.5562 0.8919 24 1 0.8300 -5.0933 0.0683 25 1 2.4211 -5.7769 -2.9478 26 1 5.1243 -8.8386 -0.3613 27 1 2.7896 -6.0034 2.7774 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143189712.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:57:16 Heat of formation + Delta-G solvation = -96.162139 kcal Electronic energy + Delta-G solvation = -16639.986758 eV Core-core repulsion = 13590.814975 eV Total energy + Delta-G solvation = -3049.171783 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.074 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.58991 -40.38391 -39.25324 -38.16173 -35.83609 -35.11939 -33.73497 -31.75009 -30.20190 -26.29905 -25.12330 -24.72240 -21.70336 -20.81248 -19.66906 -19.01572 -18.89016 -18.35425 -17.53991 -16.94268 -16.56580 -16.36292 -15.79704 -15.47503 -14.85568 -14.56519 -14.20663 -13.90042 -13.31379 -12.85225 -12.81760 -12.60899 -12.12869 -12.03338 -11.51058 -11.47699 -11.40193 -10.89604 -10.63183 -10.53138 -9.83660 -8.26612 -6.33522 -0.45870 -0.36603 1.40237 1.40858 1.53156 1.70384 1.99112 2.16420 2.24403 2.43466 2.53421 3.09388 3.17306 3.78707 3.95990 4.16388 4.38980 4.94915 5.05313 5.23533 5.26303 5.67534 5.74404 5.99379 6.28618 6.42687 6.51354 6.79187 6.83216 7.28836 7.40063 8.85113 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.040056 B = 0.006079 C = 0.005742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.857301 B = 4604.747862 C = 4875.251658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.014 3.986 3 Si 0.960 3.040 4 H -0.271 1.271 5 H -0.274 1.274 6 H -0.277 1.277 7 C -0.537 4.537 8 H 0.053 0.947 9 C 0.015 3.985 10 C 0.531 3.469 11 O -0.567 6.567 12 N -0.663 5.663 13 C -0.008 4.008 14 C 0.374 3.626 15 O -0.472 6.472 16 N -0.547 5.547 17 C 0.344 3.656 18 N -0.552 5.552 19 C 0.379 3.621 20 O -0.478 6.478 21 H 0.268 0.732 22 H 0.051 0.949 23 H 0.049 0.951 24 H 0.424 0.576 25 H 0.427 0.573 26 H 0.253 0.747 27 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.400 -15.513 -0.404 15.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.185 4.185 3 Si 0.786 3.214 4 H -0.197 1.197 5 H -0.199 1.199 6 H -0.202 1.202 7 C -0.575 4.575 8 H 0.071 0.929 9 C -0.025 4.025 10 C 0.321 3.679 11 O -0.444 6.444 12 N -0.317 5.317 13 C -0.108 4.108 14 C 0.186 3.814 15 O -0.283 6.283 16 N -0.274 5.274 17 C 0.057 3.943 18 N -0.280 5.280 19 C 0.191 3.809 20 O -0.288 6.288 21 H 0.077 0.923 22 H 0.069 0.931 23 H 0.067 0.933 24 H 0.264 0.736 25 H 0.290 0.710 26 H 0.269 0.731 27 H 0.290 0.710 Dipole moment (debyes) X Y Z Total from point charges 3.640 -15.853 -0.468 16.272 hybrid contribution -0.825 1.645 0.155 1.846 sum 2.815 -14.208 -0.313 14.488 Atomic orbital electron populations 1.70010 1.06974 1.28140 1.50988 1.25707 0.95797 1.02497 0.94480 0.85514 0.78461 0.78912 0.78560 1.19673 1.19879 1.20183 1.21323 0.93571 0.91212 1.51419 0.92894 1.19060 0.93972 0.89878 0.99553 1.21743 0.90066 0.83646 0.72396 1.90572 1.19389 1.84863 1.49543 1.43264 1.09666 1.02468 1.76285 1.19804 0.99839 0.94999 0.96175 1.19752 0.86121 0.88921 0.86641 1.84602 1.42523 1.65903 1.35262 1.68154 1.07337 1.18316 1.33605 1.25556 0.92828 0.95668 0.80230 1.68116 1.22227 1.08096 1.29530 1.19860 0.88092 0.85788 0.87178 1.84789 1.65610 1.52634 1.25765 0.92322 0.93113 0.93323 0.73586 0.71001 0.73132 0.71046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.38 13.29 21.45 0.28 -52.10 15 2 C 0.01 0.80 5.46 84.65 0.46 1.26 15 3 Si 0.96 44.57 29.54 68.60 2.03 46.60 15 4 H -0.27 -12.16 7.11 99.48 0.71 -11.46 15 5 H -0.27 -12.08 7.11 99.48 0.71 -11.37 15 6 H -0.28 -12.99 7.11 99.48 0.71 -12.28 15 7 C -0.54 -30.75 8.92 25.60 0.23 -30.53 15 8 H 0.05 3.23 6.75 -2.91 -0.02 3.21 15 9 C 0.01 0.72 5.46 29.10 0.16 0.88 15 10 C 0.53 23.13 7.63 87.66 0.67 23.80 15 11 O -0.57 -29.46 15.27 -3.09 -0.05 -29.50 15 12 N -0.66 -21.32 4.93 -302.15 -1.49 -22.81 15 13 C -0.01 -0.25 5.50 38.39 0.21 -0.03 15 14 C 0.37 10.33 7.85 84.84 0.67 10.99 15 15 O -0.47 -11.53 13.37 -89.34 -1.19 -12.72 15 16 N -0.55 -13.73 10.45 -312.58 -3.27 -17.00 15 17 C 0.34 7.40 12.28 180.89 2.22 9.62 15 18 N -0.55 -14.82 10.45 -312.56 -3.27 -18.08 15 19 C 0.38 11.49 7.60 84.84 0.64 12.14 15 20 O -0.48 -14.35 13.25 -89.41 -1.18 -15.54 15 21 H 0.27 14.31 8.31 -92.71 -0.77 13.54 15 22 H 0.05 2.47 8.14 -2.39 -0.02 2.45 15 23 H 0.05 2.38 8.14 -2.39 -0.02 2.36 15 24 H 0.42 11.10 8.83 -92.70 -0.82 10.28 15 25 H 0.43 7.70 9.06 -74.06 -0.67 7.03 15 26 H 0.25 2.78 8.06 -2.91 -0.02 2.75 15 27 H 0.43 7.59 9.06 -74.06 -0.67 6.92 15 Total: -1.00 -75.82 258.92 -3.77 -79.60 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: -0.89 Total: 13.43 kcal Atomic # 6 Polarization: 22.87 SS G_CDS: 5.26 Total: 28.13 kcal Atomic # 7 Polarization: -102.26 SS G_CDS: -7.74 Total: -110.00 kcal Atomic # 8 Polarization: -55.34 SS G_CDS: -2.43 Total: -57.76 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -75.82 -3.77 -79.60 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143189712.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.566 kcal (2) G-P(sol) polarization free energy of solvation -75.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds