Wall clock time and date at job start Sun Mar 29 2020 22:00:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 120.00175 * 2 1 4 4 H 1.48498 * 109.47097 * 270.00135 * 3 2 1 5 5 H 1.48507 * 109.46917 * 29.99775 * 3 2 1 6 6 H 1.48502 * 109.47066 * 149.99839 * 3 2 1 7 7 C 1.37876 * 119.99469 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99662 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00313 * 0.02562 * 7 2 1 10 10 C 1.50704 * 109.46871 * 179.97438 * 9 7 2 11 11 O 1.21283 * 119.99899 * 359.97438 * 10 9 7 12 12 N 1.34780 * 119.99550 * 180.02562 * 10 9 7 13 13 C 1.40021 * 119.99453 * 185.27468 * 12 10 9 14 14 C 1.38872 * 120.02772 * 33.32039 * 13 12 10 15 15 C 1.38169 * 120.05377 * 180.02562 * 14 13 12 16 16 C 1.38347 * 120.10249 * 0.02562 * 15 14 13 17 17 F 1.35096 * 119.97523 * 179.97438 * 16 15 14 18 18 C 1.38934 * 120.04199 * 0.02562 * 16 15 14 19 19 O 1.35953 * 120.02484 * 179.70778 * 18 16 15 20 20 C 1.38570 * 119.94670 * 359.97438 * 18 16 15 21 21 H 0.97005 * 119.99718 * 0.02562 * 1 2 3 22 22 H 1.08997 * 109.47173 * 59.99680 * 9 7 2 23 23 H 1.09003 * 109.46813 * 299.98895 * 9 7 2 24 24 H 0.97001 * 119.99925 * 5.26668 * 12 10 9 25 25 H 1.08001 * 119.97167 * 359.97438 * 14 13 12 26 26 H 1.08005 * 119.95034 * 179.97438 * 15 14 13 27 27 H 0.96701 * 114.00520 * 89.99780 * 19 18 16 28 28 H 1.08001 * 120.04652 * 179.97438 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2302 -3.6446 0.0005 11 8 3.4226 -3.4230 0.0001 12 7 1.7809 -4.9153 0.0000 13 6 2.6859 -5.9779 0.1115 14 6 3.8392 -5.8316 0.8711 15 6 4.7329 -6.8796 0.9810 16 6 4.4816 -8.0766 0.3346 17 9 5.3574 -9.0994 0.4434 18 6 3.3295 -8.2271 -0.4273 19 8 3.0858 -9.4016 -1.0673 20 6 2.4319 -7.1773 -0.5389 21 1 -0.4850 0.8401 -0.0004 22 1 0.6246 -2.5571 -0.8896 23 1 0.6240 -2.5567 0.8904 24 1 0.8305 -5.0936 -0.0775 25 1 4.0382 -4.8976 1.3756 26 1 5.6296 -6.7639 1.5719 27 1 2.5840 -10.0393 -0.5414 28 1 1.5361 -7.2924 -1.1310 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143198715.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:19 Heat of formation + Delta-G solvation = -103.084243 kcal Electronic energy + Delta-G solvation = -16035.098113 eV Core-core repulsion = 12965.706204 eV Total energy + Delta-G solvation = -3069.391910 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.074 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -48.80742 -40.18781 -38.64924 -36.70154 -34.05006 -33.06209 -30.34896 -29.64962 -28.08355 -24.07026 -23.19453 -22.16874 -20.03805 -18.66145 -17.44482 -16.96914 -16.72178 -16.21043 -15.86802 -15.29580 -14.64498 -14.53761 -14.30881 -14.00115 -13.64380 -13.12765 -12.78161 -12.29131 -12.23171 -11.88036 -11.35115 -10.90107 -10.75976 -10.74205 -10.06629 -9.91726 -9.40641 -9.02464 -8.84725 -8.53305 -7.86923 -6.16102 -4.16809 1.07158 1.11774 3.19570 3.29545 3.34879 3.37853 3.46784 3.70196 3.99683 4.31544 4.40585 4.73865 5.16444 5.22442 5.23473 5.46109 5.67938 5.97809 6.01111 6.25889 6.33156 6.49294 6.94092 7.05523 7.15076 7.44434 7.73498 7.87183 8.18614 8.85851 8.94025 9.48977 10.96057 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.056973 B = 0.004722 C = 0.004444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 491.339444 B = 5928.262584 C = 6298.894030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.057 3.943 3 Si 0.903 3.097 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.271 1.271 7 C -0.513 4.513 8 H 0.076 0.924 9 C 0.007 3.993 10 C 0.514 3.486 11 O -0.520 6.520 12 N -0.689 5.689 13 C 0.175 3.825 14 C -0.105 4.105 15 C -0.117 4.117 16 C 0.042 3.958 17 F -0.139 7.139 18 C 0.091 3.909 19 O -0.488 6.488 20 C -0.158 4.158 21 H 0.263 0.737 22 H 0.052 0.948 23 H 0.054 0.946 24 H 0.410 0.590 25 H 0.150 0.850 26 H 0.141 0.859 27 H 0.389 0.611 28 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.983 -15.633 1.906 15.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.731 3.269 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.196 1.196 7 C -0.552 4.552 8 H 0.094 0.906 9 C -0.032 4.032 10 C 0.306 3.694 11 O -0.393 6.393 12 N -0.335 5.335 13 C 0.078 3.922 14 C -0.125 4.125 15 C -0.137 4.137 16 C 0.021 3.979 17 F -0.118 7.118 18 C 0.045 3.955 19 O -0.298 6.298 20 C -0.179 4.179 21 H 0.073 0.927 22 H 0.070 0.930 23 H 0.072 0.928 24 H 0.246 0.754 25 H 0.168 0.832 26 H 0.158 0.842 27 H 0.245 0.755 28 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 3.003 -15.007 1.458 15.374 hybrid contribution -0.277 0.314 0.247 0.485 sum 2.727 -14.693 1.705 15.041 Atomic orbital electron populations 1.69951 1.06068 1.27147 1.50669 1.25003 0.94934 0.99584 0.94951 0.86399 0.79826 0.82443 0.78265 1.20526 1.21196 1.19610 1.21128 0.94280 0.88921 1.50859 0.90550 1.19292 0.93978 0.89979 0.99950 1.22411 0.91557 0.82842 0.72592 1.90566 1.17891 1.84070 1.46794 1.44248 1.09781 1.05179 1.74316 1.17761 0.92187 0.87923 0.94307 1.21196 0.93530 0.99567 0.98253 1.20970 1.00974 0.91180 1.00557 1.18004 0.90650 0.86615 1.02595 1.91458 1.67643 1.57782 1.94943 1.18038 0.93458 0.87916 0.96057 1.84882 1.77565 1.24585 1.42748 1.21013 1.01557 0.93197 1.02140 0.92741 0.93003 0.92815 0.75365 0.83208 0.84155 0.75509 0.84197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.44 13.29 55.43 0.74 -24.71 15 2 C 0.06 1.56 5.46 -17.82 -0.10 1.47 15 3 Si 0.90 21.49 29.54 -169.99 -5.02 16.47 15 4 H -0.28 -6.58 7.11 56.52 0.40 -6.17 15 5 H -0.29 -6.67 7.11 56.52 0.40 -6.27 15 6 H -0.27 -6.45 7.11 56.52 0.40 -6.05 15 7 C -0.51 -14.22 8.92 -34.44 -0.31 -14.52 15 8 H 0.08 2.20 6.75 -52.48 -0.35 1.85 15 9 C 0.01 0.17 5.46 -29.03 -0.16 0.01 15 10 C 0.51 10.80 7.56 -10.98 -0.08 10.72 15 11 O -0.52 -12.46 13.15 5.55 0.07 -12.39 15 12 N -0.69 -10.99 5.34 -9.86 -0.05 -11.04 15 13 C 0.17 2.65 6.28 -83.68 -0.53 2.13 15 14 C -0.11 -1.64 8.65 -39.37 -0.34 -1.98 15 15 C -0.12 -1.60 10.01 -39.57 -0.40 -1.99 15 16 C 0.04 0.58 7.31 -39.28 -0.29 0.29 15 17 F -0.14 -1.94 17.11 2.25 0.04 -1.91 15 18 C 0.09 1.19 6.71 -39.20 -0.26 0.93 15 19 O -0.49 -5.53 13.36 -19.59 -0.26 -5.79 15 20 C -0.16 -2.04 9.90 -39.26 -0.39 -2.42 15 21 H 0.26 7.06 8.31 -40.82 -0.34 6.72 15 22 H 0.05 1.24 8.14 -51.93 -0.42 0.81 15 23 H 0.05 1.27 8.14 -51.93 -0.42 0.85 15 24 H 0.41 5.17 8.82 -40.82 -0.36 4.81 15 25 H 0.15 2.59 6.41 -52.49 -0.34 2.25 15 26 H 0.14 1.60 8.06 -52.48 -0.42 1.18 15 27 H 0.39 2.35 9.06 45.56 0.41 2.76 15 28 H 0.14 1.50 8.06 -52.49 -0.42 1.08 15 LS Contribution 261.12 15.07 3.94 3.94 Total: -1.00 -32.12 261.12 -4.86 -36.99 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: -1.46 Total: 3.83 kcal Atomic # 6 Polarization: -2.53 SS G_CDS: -2.85 Total: -5.38 kcal Atomic # 7 Polarization: -36.43 SS G_CDS: 0.68 Total: -35.75 kcal Atomic # 8 Polarization: -17.99 SS G_CDS: -0.19 Total: -18.18 kcal Atomic # 9 Polarization: -1.94 SS G_CDS: 0.04 Total: -1.91 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -32.12 -4.86 -36.99 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143198715.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.098 kcal (2) G-P(sol) polarization free energy of solvation -32.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds