Wall clock time and date at job start Sun Mar 29 2020 22:00:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 120.00175 * 2 1 4 4 H 1.48498 * 109.47097 * 270.00135 * 3 2 1 5 5 H 1.48507 * 109.46917 * 29.99775 * 3 2 1 6 6 H 1.48502 * 109.47066 * 149.99839 * 3 2 1 7 7 C 1.37876 * 119.99469 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99662 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00313 * 0.02562 * 7 2 1 10 10 C 1.50704 * 109.46871 * 179.97438 * 9 7 2 11 11 O 1.21283 * 119.99899 * 359.97438 * 10 9 7 12 12 N 1.34780 * 119.99550 * 180.02562 * 10 9 7 13 13 C 1.40021 * 119.99453 * 185.27468 * 12 10 9 14 14 C 1.38872 * 120.02772 * 33.32039 * 13 12 10 15 15 C 1.38169 * 120.05377 * 180.02562 * 14 13 12 16 16 C 1.38347 * 120.10249 * 0.02562 * 15 14 13 17 17 F 1.35096 * 119.97523 * 179.97438 * 16 15 14 18 18 C 1.38934 * 120.04199 * 0.02562 * 16 15 14 19 19 O 1.35953 * 120.02484 * 179.70778 * 18 16 15 20 20 C 1.38570 * 119.94670 * 359.97438 * 18 16 15 21 21 H 0.97005 * 119.99718 * 0.02562 * 1 2 3 22 22 H 1.08997 * 109.47173 * 59.99680 * 9 7 2 23 23 H 1.09003 * 109.46813 * 299.98895 * 9 7 2 24 24 H 0.97001 * 119.99925 * 5.26668 * 12 10 9 25 25 H 1.08001 * 119.97167 * 359.97438 * 14 13 12 26 26 H 1.08005 * 119.95034 * 179.97438 * 15 14 13 27 27 H 0.96701 * 114.00520 * 89.99780 * 19 18 16 28 28 H 1.08001 * 120.04652 * 179.97438 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2302 -3.6446 0.0005 11 8 3.4226 -3.4230 0.0001 12 7 1.7809 -4.9153 0.0000 13 6 2.6859 -5.9779 0.1115 14 6 3.8392 -5.8316 0.8711 15 6 4.7329 -6.8796 0.9810 16 6 4.4816 -8.0766 0.3346 17 9 5.3574 -9.0994 0.4434 18 6 3.3295 -8.2271 -0.4273 19 8 3.0858 -9.4016 -1.0673 20 6 2.4319 -7.1773 -0.5389 21 1 -0.4850 0.8401 -0.0004 22 1 0.6246 -2.5571 -0.8896 23 1 0.6240 -2.5567 0.8904 24 1 0.8305 -5.0936 -0.0775 25 1 4.0382 -4.8976 1.3756 26 1 5.6296 -6.7639 1.5719 27 1 2.5840 -10.0393 -0.5414 28 1 1.5361 -7.2924 -1.1310 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143198715.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:18 Heat of formation + Delta-G solvation = -126.558279 kcal Electronic energy + Delta-G solvation = -16036.116024 eV Core-core repulsion = 12965.706204 eV Total energy + Delta-G solvation = -3070.409820 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.074 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -49.89389 -41.50896 -39.91680 -37.83511 -35.42826 -35.12566 -31.63944 -31.16228 -29.52360 -25.93444 -24.29134 -23.48591 -21.50420 -19.76336 -18.67922 -18.38180 -18.29094 -17.64119 -17.21118 -16.56171 -16.45052 -16.00415 -15.58164 -15.00124 -14.83569 -14.72520 -14.20703 -14.05334 -13.54707 -13.15539 -12.96064 -12.82137 -12.59051 -12.06479 -11.75240 -11.46957 -11.24003 -10.63782 -10.62813 -9.97296 -9.08837 -8.26553 -6.33462 -0.06374 0.06170 1.41426 1.41864 1.53908 1.68742 2.07923 2.43672 2.49424 2.99034 3.09900 3.30104 3.69191 4.03526 4.13860 4.19819 4.54596 4.71597 4.95409 5.03033 5.10466 5.19325 5.23799 5.34961 5.70011 5.81337 6.01412 6.53807 6.71025 6.79875 7.25593 7.38381 8.85313 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.056973 B = 0.004722 C = 0.004444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 491.339444 B = 5928.262584 C = 6298.894030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.013 3.987 3 Si 0.962 3.038 4 H -0.273 1.273 5 H -0.275 1.275 6 H -0.274 1.274 7 C -0.538 4.538 8 H 0.057 0.943 9 C 0.010 3.990 10 C 0.522 3.478 11 O -0.556 6.556 12 N -0.669 5.669 13 C 0.155 3.845 14 C -0.123 4.123 15 C -0.113 4.113 16 C 0.037 3.963 17 F -0.140 7.140 18 C 0.102 3.898 19 O -0.494 6.494 20 C -0.143 4.143 21 H 0.268 0.732 22 H 0.050 0.950 23 H 0.052 0.948 24 H 0.427 0.573 25 H 0.127 0.873 26 H 0.158 0.842 27 H 0.415 0.585 28 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.824 -16.839 1.545 17.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.186 4.186 3 Si 0.787 3.213 4 H -0.198 1.198 5 H -0.200 1.200 6 H -0.199 1.199 7 C -0.576 4.576 8 H 0.076 0.924 9 C -0.029 4.029 10 C 0.312 3.688 11 O -0.432 6.432 12 N -0.316 5.316 13 C 0.060 3.940 14 C -0.144 4.144 15 C -0.132 4.132 16 C 0.016 3.984 17 F -0.119 7.119 18 C 0.055 3.945 19 O -0.307 6.307 20 C -0.164 4.164 21 H 0.076 0.924 22 H 0.068 0.932 23 H 0.070 0.930 24 H 0.266 0.734 25 H 0.145 0.855 26 H 0.176 0.824 27 H 0.275 0.725 28 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 2.802 -16.279 1.106 16.556 hybrid contribution -0.229 0.520 0.355 0.670 sum 2.573 -15.760 1.461 16.035 Atomic orbital electron populations 1.70016 1.07047 1.28137 1.51040 1.25732 0.95804 1.02607 0.94494 0.85494 0.78531 0.78820 0.78498 1.19849 1.20015 1.19876 1.21366 0.93792 0.91129 1.51359 0.92442 1.19110 0.94108 0.90089 0.99617 1.21758 0.90318 0.83994 0.72683 1.90552 1.18929 1.84950 1.48804 1.43738 1.10935 1.03853 1.73044 1.17873 0.92166 0.88328 0.95681 1.21087 0.94618 0.99387 0.99273 1.21060 1.01082 0.90636 1.00427 1.18141 0.90964 0.86513 1.02747 1.91459 1.67754 1.57709 1.94961 1.18038 0.92852 0.88603 0.94966 1.84827 1.78115 1.24420 1.43328 1.21147 1.02234 0.91785 1.01265 0.92357 0.93236 0.93043 0.73367 0.85508 0.82448 0.72516 0.81546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.20 13.29 21.45 0.28 -51.91 15 2 C 0.01 0.70 5.46 84.65 0.46 1.16 15 3 Si 0.96 44.11 29.54 68.60 2.03 46.14 15 4 H -0.27 -12.18 7.11 99.48 0.71 -11.48 15 5 H -0.28 -12.04 7.11 99.48 0.71 -11.33 15 6 H -0.27 -12.57 7.11 99.48 0.71 -11.87 15 7 C -0.54 -30.34 8.92 25.60 0.23 -30.11 15 8 H 0.06 3.41 6.75 -2.91 -0.02 3.39 15 9 C 0.01 0.49 5.46 29.10 0.16 0.65 15 10 C 0.52 22.14 7.56 87.66 0.66 22.80 15 11 O -0.56 -27.31 13.15 -3.04 -0.04 -27.35 15 12 N -0.67 -20.79 5.34 -303.49 -1.62 -22.41 15 13 C 0.16 4.52 6.28 38.12 0.24 4.76 15 14 C -0.12 -3.81 8.65 22.41 0.19 -3.62 15 15 C -0.11 -2.94 10.01 22.28 0.22 -2.72 15 16 C 0.04 0.93 7.31 22.46 0.16 1.10 15 17 F -0.14 -3.60 17.11 44.97 0.77 -2.83 15 18 C 0.10 2.36 6.71 22.52 0.15 2.51 15 19 O -0.49 -9.43 13.36 -93.02 -1.24 -10.67 15 20 C -0.14 -3.31 9.90 22.48 0.22 -3.09 15 21 H 0.27 14.24 8.31 -92.70 -0.77 13.47 15 22 H 0.05 2.38 8.14 -2.39 -0.02 2.36 15 23 H 0.05 2.47 8.14 -2.39 -0.02 2.45 15 24 H 0.43 10.13 8.82 -92.71 -0.82 9.31 15 25 H 0.13 4.54 6.41 -2.91 -0.02 4.52 15 26 H 0.16 3.42 8.06 -2.91 -0.02 3.40 15 27 H 0.41 3.40 9.06 -74.06 -0.67 2.73 15 28 H 0.17 2.93 8.06 -2.91 -0.02 2.90 15 Total: -1.00 -68.36 261.12 2.62 -65.74 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -0.26 Total: 9.87 kcal Atomic # 6 Polarization: -9.27 SS G_CDS: 2.71 Total: -6.57 kcal Atomic # 7 Polarization: -72.99 SS G_CDS: -1.34 Total: -74.33 kcal Atomic # 8 Polarization: -36.74 SS G_CDS: -1.28 Total: -38.02 kcal Atomic # 9 Polarization: -3.60 SS G_CDS: 0.77 Total: -2.83 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Total: -68.36 2.62 -65.74 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143198715.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.820 kcal (2) G-P(sol) polarization free energy of solvation -68.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds