Wall clock time and date at job start Sun Mar 29 2020 21:58:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35671 * 116.99880 * 2 1 4 4 N 1.32208 * 119.63336 * 359.97438 * 3 2 1 5 5 C 1.32513 * 121.56136 * 180.02562 * 4 3 2 6 6 N 1.39002 * 119.66278 * 180.02562 * 5 4 3 7 7 C 1.32776 * 119.99763 * 174.21458 * 6 5 4 8 8 H 1.08007 * 119.99821 * 5.06984 * 7 6 5 9 9 C 1.46796 * 120.00151 * 185.06360 * 7 6 5 10 10 N 1.29329 * 120.00029 * 179.97438 * 9 7 6 11 11 Si 1.86803 * 120.00018 * 0.02562 * 9 7 6 12 12 H 1.48500 * 109.46950 * 89.99515 * 11 9 7 13 13 H 1.48501 * 109.46804 * 209.99837 * 11 9 7 14 14 H 1.48505 * 109.46967 * 329.99837 * 11 9 7 15 15 C 1.39038 * 120.66837 * 359.97438 * 5 4 3 16 16 C 1.38552 * 119.21085 * 0.02562 * 15 5 4 17 17 C 1.38548 * 118.56110 * 0.28183 * 16 15 5 18 18 N 1.48015 * 120.36638 * 179.69836 * 17 16 15 19 19 O 1.31699 * 120.00377 * 0.02562 * 18 17 16 20 20 O 1.31704 * 120.00134 * 179.97438 * 18 17 16 21 21 H 1.09000 * 109.47143 * 60.00307 * 1 2 3 22 22 H 1.09009 * 109.46831 * 180.02562 * 1 2 3 23 23 H 1.08996 * 109.47007 * 299.99586 * 1 2 3 24 24 H 0.96996 * 120.00218 * 354.21281 * 6 5 4 25 25 H 0.97000 * 119.99612 * 180.02562 * 10 9 7 26 26 H 1.07992 * 120.39306 * 180.02562 * 15 5 4 27 27 H 1.08003 * 120.71837 * 180.02562 * 16 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2088 0.0000 4 7 1.3177 2.3130 -0.0005 5 6 1.8792 3.5133 -0.0010 6 7 1.0767 4.6482 -0.0010 7 6 1.6275 5.8508 0.1144 8 1 2.7026 5.9534 0.1258 9 6 0.7753 7.0408 0.2263 10 7 1.3119 8.2121 0.3392 11 14 -1.0842 6.8632 0.2071 12 1 -1.5786 6.6837 1.5958 13 1 -1.6919 8.0839 -0.3810 14 1 -1.4600 5.6807 -0.6089 15 6 3.2630 3.6489 -0.0005 16 6 4.0539 2.5113 0.0000 17 6 3.4329 1.2728 -0.0060 18 7 4.2391 0.0315 -0.0124 19 8 5.5543 0.1004 -0.0119 20 8 3.6413 -1.1420 -0.0176 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0278 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 0.1142 4.5616 -0.0853 25 1 0.7487 8.9984 0.4135 26 1 3.7159 4.6292 -0.0005 27 1 5.1312 2.5883 0.0008 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155530964.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:53 Heat of formation + Delta-G solvation = 27.290470 kcal Electronic energy + Delta-G solvation = -16530.827065 eV Core-core repulsion = 13487.008589 eV Total energy + Delta-G solvation = -3043.818476 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.074 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.15617 -38.07277 -37.29240 -35.77411 -33.53774 -32.90687 -31.66128 -29.63139 -26.89791 -26.11309 -24.03611 -22.66310 -21.34040 -19.54128 -18.18238 -17.26379 -17.00137 -16.43018 -15.84697 -15.68726 -14.99764 -14.39504 -14.34377 -13.60724 -13.43739 -13.34494 -12.81785 -12.48777 -12.15391 -11.53137 -11.44083 -11.39700 -10.98471 -10.44691 -9.95522 -9.84274 -9.75154 -9.45163 -9.18350 -9.15362 -7.79067 -7.75202 -4.45121 0.51116 2.06473 2.12195 2.41163 2.45510 2.48911 2.63188 3.08512 3.43909 3.75130 3.80684 4.46989 5.12739 5.48305 5.60072 5.62497 5.72557 5.81978 5.91665 5.99544 6.41617 6.44695 6.85385 6.91705 7.14194 7.22168 7.69305 7.94110 8.14356 8.25671 8.69817 9.20888 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.035801 B = 0.006691 C = 0.005657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.914824 B = 4183.877655 C = 4948.073675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.280 6.280 3 C 0.439 3.561 4 N -0.602 5.602 5 C 0.292 3.708 6 N -0.437 5.437 7 C -0.293 4.293 8 H 0.143 0.857 9 C 0.059 3.941 10 N -0.755 5.755 11 Si 0.894 3.106 12 H -0.251 1.251 13 H -0.257 1.257 14 H -0.251 1.251 15 C -0.223 4.223 16 C 0.006 3.994 17 C -0.182 4.182 18 N 0.049 4.951 19 O -0.310 6.310 20 O -0.267 6.267 21 H 0.056 0.944 22 H 0.092 0.908 23 H 0.056 0.944 24 H 0.391 0.609 25 H 0.308 0.692 26 H 0.141 0.859 27 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.919 1.488 -0.270 7.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.183 6.183 3 C 0.241 3.759 4 N -0.344 5.344 5 C 0.050 3.950 6 N -0.031 5.031 7 C -0.429 4.429 8 H 0.160 0.840 9 C -0.167 4.167 10 N -0.378 5.378 11 Si 0.715 3.285 12 H -0.174 1.174 13 H -0.180 1.180 14 H -0.175 1.175 15 C -0.249 4.249 16 C -0.019 4.019 17 C -0.289 4.289 18 N 0.481 4.519 19 O -0.465 6.465 20 O -0.433 6.433 21 H 0.074 0.926 22 H 0.110 0.890 23 H 0.075 0.925 24 H 0.227 0.773 25 H 0.121 0.879 26 H 0.158 0.842 27 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -7.784 2.106 -0.227 8.067 hybrid contribution -0.365 0.100 -0.047 0.381 sum -8.149 2.206 -0.274 8.447 Atomic orbital electron populations 1.22824 0.78343 1.02441 1.02114 1.86578 1.21920 1.23643 1.86142 1.18624 0.86212 0.84525 0.86551 1.66516 1.38168 0.96875 1.32861 1.17206 0.87850 0.83924 1.05987 1.40306 1.08787 1.04162 1.49819 1.21140 0.96899 0.80678 1.44180 0.83995 1.27069 1.01577 0.93982 0.94068 1.68561 1.40779 0.99800 1.28697 0.86346 0.80064 0.80888 0.81185 1.17449 1.18043 1.17519 1.20903 0.91554 0.98625 1.13784 1.20494 1.00372 0.88468 0.92519 1.19435 0.87017 0.83741 1.38739 1.49659 1.02185 1.03319 0.96783 1.96123 0.90254 1.95929 1.64244 1.96168 1.73409 1.12141 1.61591 0.92568 0.88965 0.92545 0.77292 0.87898 0.84163 0.83820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 48. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.57 10.38 101.05 1.05 1.62 15 2 O -0.28 -5.68 8.41 -40.80 -0.34 -6.03 15 3 C 0.44 9.42 7.48 -17.13 -0.13 9.30 15 4 N -0.60 -12.19 9.24 -12.47 -0.12 -12.31 15 5 C 0.29 5.82 7.59 -154.96 -1.18 4.64 15 6 N -0.44 -8.12 5.16 -9.93 -0.05 -8.17 15 7 C -0.29 -5.65 10.29 -13.69 -0.14 -5.79 15 8 H 0.14 2.86 5.81 -52.48 -0.30 2.55 15 9 C 0.06 1.08 5.70 -15.15 -0.09 0.99 15 10 N -0.75 -14.57 13.88 56.00 0.78 -13.79 15 11 Si 0.89 13.35 27.91 -169.99 -4.74 8.61 15 12 H -0.25 -3.77 7.11 56.52 0.40 -3.37 15 13 H -0.26 -3.75 7.11 56.52 0.40 -3.35 15 14 H -0.25 -3.62 6.55 56.52 0.37 -3.25 15 15 C -0.22 -4.30 9.32 -39.17 -0.36 -4.67 15 16 C 0.01 0.13 9.68 -39.35 -0.38 -0.25 15 17 C -0.18 -4.11 6.93 -79.57 -0.55 -4.66 15 18 N 0.05 1.23 4.98 34.15 0.17 1.40 15 19 O -0.31 -7.87 19.22 -31.57 -0.61 -8.48 15 20 O -0.27 -6.87 17.91 -39.20 -0.70 -7.57 15 21 H 0.06 0.80 8.10 -51.93 -0.42 0.38 15 22 H 0.09 1.10 8.14 -51.92 -0.42 0.68 15 23 H 0.06 0.81 8.10 -51.93 -0.42 0.38 15 24 H 0.39 6.67 6.05 -40.82 -0.25 6.42 15 25 H 0.31 5.23 8.26 -40.82 -0.34 4.89 15 26 H 0.14 2.49 5.95 -52.49 -0.31 2.18 15 27 H 0.14 2.65 7.66 -52.48 -0.40 2.25 15 LS Contribution 252.92 15.07 3.81 3.81 Total: -1.00 -26.30 252.92 -5.28 -31.58 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: -1.69 Total: 9.76 kcal Atomic # 6 Polarization: 2.96 SS G_CDS: -1.78 Total: 1.18 kcal Atomic # 7 Polarization: -33.65 SS G_CDS: 0.78 Total: -32.87 kcal Atomic # 8 Polarization: -20.42 SS G_CDS: -1.65 Total: -22.07 kcal Atomic # 14 Polarization: 13.35 SS G_CDS: -4.74 Total: 8.61 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -26.30 -5.28 -31.58 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155530964.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.871 kcal (2) G-P(sol) polarization free energy of solvation -26.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.580 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds