Wall clock time and date at job start Sun Mar 29 2020 21:58:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35671 * 116.99880 * 2 1 4 4 N 1.32208 * 119.63336 * 359.97438 * 3 2 1 5 5 C 1.32513 * 121.56136 * 180.02562 * 4 3 2 6 6 N 1.39002 * 119.66278 * 180.02562 * 5 4 3 7 7 C 1.32776 * 119.99763 * 174.21458 * 6 5 4 8 8 H 1.08007 * 119.99821 * 5.06984 * 7 6 5 9 9 C 1.46796 * 120.00151 * 185.06360 * 7 6 5 10 10 N 1.29329 * 120.00029 * 179.97438 * 9 7 6 11 11 Si 1.86803 * 120.00018 * 0.02562 * 9 7 6 12 12 H 1.48500 * 109.46950 * 89.99515 * 11 9 7 13 13 H 1.48501 * 109.46804 * 209.99837 * 11 9 7 14 14 H 1.48505 * 109.46967 * 329.99837 * 11 9 7 15 15 C 1.39038 * 120.66837 * 359.97438 * 5 4 3 16 16 C 1.38552 * 119.21085 * 0.02562 * 15 5 4 17 17 C 1.38548 * 118.56110 * 0.28183 * 16 15 5 18 18 N 1.48015 * 120.36638 * 179.69836 * 17 16 15 19 19 O 1.31699 * 120.00377 * 0.02562 * 18 17 16 20 20 O 1.31704 * 120.00134 * 179.97438 * 18 17 16 21 21 H 1.09000 * 109.47143 * 60.00307 * 1 2 3 22 22 H 1.09009 * 109.46831 * 180.02562 * 1 2 3 23 23 H 1.08996 * 109.47007 * 299.99586 * 1 2 3 24 24 H 0.96996 * 120.00218 * 354.21281 * 6 5 4 25 25 H 0.97000 * 119.99612 * 180.02562 * 10 9 7 26 26 H 1.07992 * 120.39306 * 180.02562 * 15 5 4 27 27 H 1.08003 * 120.71837 * 180.02562 * 16 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2088 0.0000 4 7 1.3177 2.3130 -0.0005 5 6 1.8792 3.5133 -0.0010 6 7 1.0767 4.6482 -0.0010 7 6 1.6275 5.8508 0.1144 8 1 2.7026 5.9534 0.1258 9 6 0.7753 7.0408 0.2263 10 7 1.3119 8.2121 0.3392 11 14 -1.0842 6.8632 0.2071 12 1 -1.5786 6.6837 1.5958 13 1 -1.6919 8.0839 -0.3810 14 1 -1.4600 5.6807 -0.6089 15 6 3.2630 3.6489 -0.0005 16 6 4.0539 2.5113 0.0000 17 6 3.4329 1.2728 -0.0060 18 7 4.2391 0.0315 -0.0124 19 8 5.5543 0.1004 -0.0119 20 8 3.6413 -1.1420 -0.0176 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0278 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 0.1142 4.5616 -0.0853 25 1 0.7487 8.9984 0.4135 26 1 3.7159 4.6292 -0.0005 27 1 5.1312 2.5883 0.0008 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155530964.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:52 Heat of formation + Delta-G solvation = 9.514042 kcal Electronic energy + Delta-G solvation = -16531.597909 eV Core-core repulsion = 13487.008589 eV Total energy + Delta-G solvation = -3044.589320 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.074 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.56026 -39.68000 -38.50663 -37.42362 -35.47789 -34.14853 -33.04884 -31.06875 -28.08951 -27.85002 -25.65040 -24.11995 -22.85533 -21.32481 -19.72041 -18.70926 -18.39925 -17.83111 -17.49389 -17.00132 -16.37888 -16.10657 -15.67185 -15.22003 -14.91055 -14.72666 -14.25406 -13.90740 -13.60146 -13.23605 -12.75215 -12.57309 -12.26158 -11.83323 -11.39707 -11.30941 -11.10120 -11.02772 -10.66875 -10.64391 -9.66583 -9.30735 -6.04858 -1.25551 0.52904 0.71233 1.07992 1.25962 1.32461 1.43194 1.77119 1.89170 2.08473 2.38019 2.93518 3.67425 4.03777 4.13012 4.26431 4.40079 4.51646 4.55769 4.73540 4.84930 4.97140 5.14846 5.34106 5.43822 5.96313 6.04653 6.15067 6.57498 6.98088 7.14435 7.29112 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.035801 B = 0.006691 C = 0.005657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.914824 B = 4183.877655 C = 4948.073675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.307 6.307 3 C 0.394 3.606 4 N -0.556 5.556 5 C 0.150 3.850 6 N -0.371 5.371 7 C -0.148 4.148 8 H 0.160 0.840 9 C 0.027 3.973 10 N -0.695 5.695 11 Si 0.949 3.051 12 H -0.241 1.241 13 H -0.235 1.235 14 H -0.236 1.236 15 C -0.148 4.148 16 C -0.076 4.076 17 C -0.143 4.143 18 N 0.043 4.957 19 O -0.462 6.462 20 O -0.427 6.427 21 H 0.063 0.937 22 H 0.113 0.887 23 H 0.063 0.937 24 H 0.410 0.590 25 H 0.342 0.658 26 H 0.163 0.837 27 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.705 13.611 0.010 19.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.210 6.210 3 C 0.189 3.811 4 N -0.299 5.299 5 C -0.084 4.084 6 N 0.040 4.960 7 C -0.299 4.299 8 H 0.177 0.823 9 C -0.207 4.207 10 N -0.317 5.317 11 Si 0.765 3.235 12 H -0.164 1.164 13 H -0.157 1.157 14 H -0.160 1.160 15 C -0.173 4.173 16 C -0.100 4.100 17 C -0.265 4.265 18 N 0.411 4.589 19 O -0.575 6.575 20 O -0.546 6.546 21 H 0.081 0.919 22 H 0.131 0.869 23 H 0.081 0.919 24 H 0.250 0.750 25 H 0.158 0.842 26 H 0.180 0.820 27 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -14.232 13.577 0.035 19.669 hybrid contribution 0.333 -0.321 -0.040 0.464 sum -13.899 13.256 -0.005 19.207 Atomic orbital electron populations 1.23092 0.76391 1.04186 1.02544 1.86599 1.24080 1.23804 1.86469 1.18519 0.86107 0.84797 0.91637 1.66224 1.37909 0.96652 1.29091 1.16842 0.87763 0.83897 1.19883 1.40754 1.10601 1.04201 1.40461 1.22701 0.99177 0.81475 1.26522 0.82323 1.28087 1.06169 0.92845 0.93630 1.68498 1.44719 1.01315 1.17153 0.85469 0.72843 0.82883 0.82340 1.16403 1.15749 1.15956 1.21028 0.91166 0.98508 1.06575 1.20316 1.00290 0.88475 1.00948 1.19993 0.88070 0.84031 1.34390 1.49275 1.01213 1.03012 1.05412 1.95934 0.92181 1.96041 1.73357 1.95989 1.73367 1.13955 1.71331 0.91872 0.86874 0.91864 0.74995 0.84214 0.81958 0.84606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 87. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.05 10.38 113.37 1.18 2.23 15 2 O -0.31 -14.42 8.41 -68.76 -0.58 -14.99 15 3 C 0.39 18.83 7.48 84.81 0.63 19.46 15 4 N -0.56 -22.28 9.24 -306.27 -2.83 -25.11 15 5 C 0.15 5.37 7.59 133.01 1.01 6.38 15 6 N -0.37 -10.11 5.16 -185.34 -0.96 -11.07 15 7 C -0.15 -3.77 10.29 86.79 0.89 -2.88 15 8 H 0.16 4.19 5.81 -2.91 -0.02 4.17 15 9 C 0.03 0.59 5.70 87.30 0.50 1.09 15 10 N -0.69 -16.47 13.88 23.26 0.32 -16.15 15 11 Si 0.95 15.19 27.91 68.60 1.91 17.11 15 12 H -0.24 -4.03 7.11 99.48 0.71 -3.33 15 13 H -0.24 -3.50 7.11 99.48 0.71 -2.79 15 14 H -0.24 -3.64 6.55 99.48 0.65 -2.99 15 15 C -0.15 -5.42 9.32 22.54 0.21 -5.21 15 16 C -0.08 -3.42 9.68 22.42 0.22 -3.20 15 17 C -0.14 -7.63 6.93 36.62 0.25 -7.37 15 18 N 0.04 2.75 4.98 -45.88 -0.23 2.52 15 19 O -0.46 -30.53 19.22 3.52 0.07 -30.46 15 20 O -0.43 -28.35 17.91 10.81 0.19 -28.16 15 21 H 0.06 1.86 8.10 -2.39 -0.02 1.84 15 22 H 0.11 3.00 8.14 -2.38 -0.02 2.98 15 23 H 0.06 1.86 8.10 -2.39 -0.02 1.84 15 24 H 0.41 9.43 6.05 -92.71 -0.56 8.87 15 25 H 0.34 6.43 8.26 -92.71 -0.77 5.66 15 26 H 0.16 4.76 5.95 -2.91 -0.02 4.74 15 27 H 0.14 6.04 7.66 -2.91 -0.02 6.02 15 Total: -1.00 -72.22 252.92 3.42 -68.80 By element: Atomic # 1 Polarization: 26.40 SS G_CDS: 0.62 Total: 27.02 kcal Atomic # 6 Polarization: 5.59 SS G_CDS: 4.89 Total: 10.49 kcal Atomic # 7 Polarization: -46.11 SS G_CDS: -3.69 Total: -49.81 kcal Atomic # 8 Polarization: -73.29 SS G_CDS: -0.32 Total: -73.61 kcal Atomic # 14 Polarization: 15.19 SS G_CDS: 1.91 Total: 17.11 kcal Total: -72.22 3.42 -68.80 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155530964.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.311 kcal (2) G-P(sol) polarization free energy of solvation -72.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.797 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds